HEADER TRANSPORT PROTEIN 22-APR-09 3A1S TITLE CRYSTAL STRUCTUE OF THE CYTOSOLIC DOMAIN OF T. MARITIMA FEOB TITLE 2 IRON IRANSPORTER IN GDP FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON(II) TRANSPORT PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 17-269; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0051; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FEOB, IRON TRANSPORTER, SMALL GTPASE, G PROTEIN, GDI, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.HATTORI,R.ISHITANI,O.NUREKI REVDAT 2 03-NOV-09 3A1S 1 JRNL REVDAT 1 22-SEP-09 3A1S 0 JRNL AUTH M.HATTORI,Y.JIN,H.NISHIMASU,Y.TANAKA,M.MOCHIZUKI, JRNL AUTH 2 T.UCHIUMI,R.ISHITANI,K.ITO,O.NUREKI JRNL TITL STRUCTURAL BASIS OF NOVEL INTERACTIONS BETWEEN THE JRNL TITL 2 SMALL-GTPASE AND GDI-LIKE DOMAINS IN PROKARYOTIC JRNL TITL 3 FEOB IRON TRANSPORTER JRNL REF STRUCTURE V. 17 1345 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19733088 JRNL DOI 10.1016/J.STR.2009.08.007 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 88234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8602 - 4.6591 0.98 2981 147 0.2264 0.2420 REMARK 3 2 4.6591 - 3.6985 1.00 2934 143 0.1543 0.1765 REMARK 3 3 3.6985 - 3.2311 1.00 2834 177 0.1606 0.1955 REMARK 3 4 3.2311 - 2.9357 1.00 2852 140 0.1591 0.2102 REMARK 3 5 2.9357 - 2.7253 1.00 2825 156 0.1689 0.1871 REMARK 3 6 2.7253 - 2.5646 1.00 2845 150 0.1682 0.2282 REMARK 3 7 2.5646 - 2.4362 1.00 2782 145 0.1624 0.2221 REMARK 3 8 2.4362 - 2.3301 1.00 2813 159 0.1595 0.2049 REMARK 3 9 2.3301 - 2.2404 1.00 2846 133 0.1469 0.1825 REMARK 3 10 2.2404 - 2.1631 1.00 2798 142 0.1462 0.2057 REMARK 3 11 2.1631 - 2.0955 1.00 2799 148 0.1411 0.1934 REMARK 3 12 2.0955 - 2.0356 1.00 2799 153 0.1417 0.1921 REMARK 3 13 2.0356 - 1.9820 1.00 2788 162 0.1498 0.2218 REMARK 3 14 1.9820 - 1.9336 1.00 2771 143 0.1391 0.2237 REMARK 3 15 1.9336 - 1.8897 1.00 2760 163 0.1413 0.1846 REMARK 3 16 1.8897 - 1.8495 1.00 2794 133 0.1523 0.2458 REMARK 3 17 1.8495 - 1.8125 1.00 2808 137 0.1549 0.2407 REMARK 3 18 1.8125 - 1.7783 1.00 2768 139 0.1631 0.2108 REMARK 3 19 1.7783 - 1.7465 1.00 2778 148 0.1611 0.2264 REMARK 3 20 1.7465 - 1.7169 1.00 2742 152 0.1707 0.2607 REMARK 3 21 1.7169 - 1.6892 1.00 2771 152 0.1703 0.2310 REMARK 3 22 1.6892 - 1.6632 1.00 2768 139 0.1695 0.2275 REMARK 3 23 1.6632 - 1.6388 1.00 2774 147 0.1683 0.2663 REMARK 3 24 1.6388 - 1.6157 1.00 2701 165 0.1789 0.2311 REMARK 3 25 1.6157 - 1.5938 1.00 2781 159 0.1825 0.2348 REMARK 3 26 1.5938 - 1.5731 0.99 2747 143 0.2009 0.2594 REMARK 3 27 1.5731 - 1.5535 0.99 2735 133 0.2128 0.3031 REMARK 3 28 1.5535 - 1.5348 0.99 2785 143 0.2233 0.2924 REMARK 3 29 1.5348 - 1.5169 0.99 2748 131 0.2411 0.2819 REMARK 3 30 1.5169 - 1.4999 0.98 2682 143 0.2704 0.3447 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 67.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4229 REMARK 3 ANGLE : 0.990 5737 REMARK 3 CHIRALITY : 0.062 661 REMARK 3 PLANARITY : 0.003 706 REMARK 3 DIHEDRAL : 18.052 1586 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3A1S COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-09. REMARK 100 THE RCSB ID CODE IS RCSB028703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918, 0.97942, 0.96419, REMARK 200 0.99515 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88234 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60-64% MPD, 0.1M HEPES, PH7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 53.58300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.86150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.58300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.86150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 317 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 496 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 540 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 PRO A 13 REMARK 465 ASP A 269 REMARK 465 ARG B 184 REMARK 465 MSE B 185 REMARK 465 ASP B 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 ARG A 210 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 179 CG OD1 ND2 REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 206 CG OD1 OD2 REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 ARG B 210 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 59 CA CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 84 OD1 ASP B 88 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 44 -154.53 -152.73 REMARK 500 LEU A 76 65.02 -113.71 REMARK 500 TYR A 78 45.73 -149.17 REMARK 500 ALA B 44 -150.70 -132.23 REMARK 500 SER B 75 144.92 96.27 REMARK 500 LEU B 76 59.08 -104.34 REMARK 500 TYR B 78 53.35 -156.16 REMARK 500 LYS B 208 74.13 -113.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER B 79 22.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 3 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 1 O3B REMARK 620 2 GDP B 2 O3B 178.7 REMARK 620 3 HOH B 278 O 90.9 90.3 REMARK 620 4 HOH A 421 O 89.5 90.7 81.9 REMARK 620 5 HOH A 272 O 89.6 90.4 84.6 166.5 REMARK 620 6 HOH A 10 O 91.0 87.7 174.1 103.6 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 4 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 426 O REMARK 620 2 HOH A 341 O 103.7 REMARK 620 3 HOH A 381 O 86.0 84.3 REMARK 620 4 HOH A 475 O 77.8 174.6 101.0 REMARK 620 5 HOH B 404 O 166.7 82.9 83.1 96.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 4 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 5 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 6 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 2 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AIT RELATED DB: PDB REMARK 900 RELATED ID: 3AIU RELATED DB: PDB REMARK 900 RELATED ID: 3AIV RELATED DB: PDB REMARK 900 RELATED ID: 3AIW RELATED DB: PDB DBREF 3A1S A 17 269 UNP Q9WXQ8 Q9WXQ8_THEMA 17 269 DBREF 3A1S B 17 269 UNP Q9WXQ8 Q9WXQ8_THEMA 17 269 SEQADV 3A1S GLY A 12 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1S PRO A 13 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1S LEU A 14 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1S HIS A 15 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1S MSE A 16 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1S GLY B 12 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1S PRO B 13 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1S LEU B 14 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1S HIS B 15 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1S MSE B 16 UNP Q9WXQ8 EXPRESSION TAG SEQRES 1 A 258 GLY PRO LEU HIS MSE VAL LYS VAL ALA LEU ALA GLY CYS SEQRES 2 A 258 PRO ASN VAL GLY LYS THR SER LEU PHE ASN ALA LEU THR SEQRES 3 A 258 GLY THR LYS GLN TYR VAL ALA ASN TRP PRO GLY VAL THR SEQRES 4 A 258 VAL GLU LYS LYS GLU GLY VAL PHE THR TYR LYS GLY TYR SEQRES 5 A 258 THR ILE ASN LEU ILE ASP LEU PRO GLY THR TYR SER LEU SEQRES 6 A 258 GLY TYR SER SER ILE ASP GLU LYS ILE ALA ARG ASP TYR SEQRES 7 A 258 LEU LEU LYS GLY ASP ALA ASP LEU VAL ILE LEU VAL ALA SEQRES 8 A 258 ASP SER VAL ASN PRO GLU GLN SER LEU TYR LEU LEU LEU SEQRES 9 A 258 GLU ILE LEU GLU MSE GLU LYS LYS VAL ILE LEU ALA MSE SEQRES 10 A 258 THR ALA ILE ASP GLU ALA LYS LYS THR GLY MSE LYS ILE SEQRES 11 A 258 ASP ARG TYR GLU LEU GLN LYS HIS LEU GLY ILE PRO VAL SEQRES 12 A 258 VAL PHE THR SER SER VAL THR GLY GLU GLY LEU GLU GLU SEQRES 13 A 258 LEU LYS GLU LYS ILE VAL GLU TYR ALA GLN LYS ASN THR SEQRES 14 A 258 ILE LEU HIS ARG MSE ILE LEU ASP TYR GLY GLU LYS VAL SEQRES 15 A 258 GLU SER GLU ILE LYS LYS VAL GLU ASN PHE LEU ARG ASP SEQRES 16 A 258 LYS LYS LEU ARG ILE ASN PRO ARG TYR PHE ALA LEU LYS SEQRES 17 A 258 TYR LEU SER GLY ASP PRO GLU PHE TYR SER GLU GLY VAL SEQRES 18 A 258 LYS LEU GLY LEU PRO GLU LEU SER GLU GLU GLU ARG ILE SEQRES 19 A 258 GLY TYR ARG LEU LEU ILE ALA LYS ARG LYS ARG GLU TYR SEQRES 20 A 258 VAL GLU ASN VAL VAL LYS GLU ALA PHE ALA ASP SEQRES 1 B 258 GLY PRO LEU HIS MSE VAL LYS VAL ALA LEU ALA GLY CYS SEQRES 2 B 258 PRO ASN VAL GLY LYS THR SER LEU PHE ASN ALA LEU THR SEQRES 3 B 258 GLY THR LYS GLN TYR VAL ALA ASN TRP PRO GLY VAL THR SEQRES 4 B 258 VAL GLU LYS LYS GLU GLY VAL PHE THR TYR LYS GLY TYR SEQRES 5 B 258 THR ILE ASN LEU ILE ASP LEU PRO GLY THR TYR SER LEU SEQRES 6 B 258 GLY TYR SER SER ILE ASP GLU LYS ILE ALA ARG ASP TYR SEQRES 7 B 258 LEU LEU LYS GLY ASP ALA ASP LEU VAL ILE LEU VAL ALA SEQRES 8 B 258 ASP SER VAL ASN PRO GLU GLN SER LEU TYR LEU LEU LEU SEQRES 9 B 258 GLU ILE LEU GLU MSE GLU LYS LYS VAL ILE LEU ALA MSE SEQRES 10 B 258 THR ALA ILE ASP GLU ALA LYS LYS THR GLY MSE LYS ILE SEQRES 11 B 258 ASP ARG TYR GLU LEU GLN LYS HIS LEU GLY ILE PRO VAL SEQRES 12 B 258 VAL PHE THR SER SER VAL THR GLY GLU GLY LEU GLU GLU SEQRES 13 B 258 LEU LYS GLU LYS ILE VAL GLU TYR ALA GLN LYS ASN THR SEQRES 14 B 258 ILE LEU HIS ARG MSE ILE LEU ASP TYR GLY GLU LYS VAL SEQRES 15 B 258 GLU SER GLU ILE LYS LYS VAL GLU ASN PHE LEU ARG ASP SEQRES 16 B 258 LYS LYS LEU ARG ILE ASN PRO ARG TYR PHE ALA LEU LYS SEQRES 17 B 258 TYR LEU SER GLY ASP PRO GLU PHE TYR SER GLU GLY VAL SEQRES 18 B 258 LYS LEU GLY LEU PRO GLU LEU SER GLU GLU GLU ARG ILE SEQRES 19 B 258 GLY TYR ARG LEU LEU ILE ALA LYS ARG LYS ARG GLU TYR SEQRES 20 B 258 VAL GLU ASN VAL VAL LYS GLU ALA PHE ALA ASP MODRES 3A1S MSE A 16 MET SELENOMETHIONINE MODRES 3A1S MSE A 120 MET SELENOMETHIONINE MODRES 3A1S MSE A 128 MET SELENOMETHIONINE MODRES 3A1S MSE A 139 MET SELENOMETHIONINE MODRES 3A1S MSE A 185 MET SELENOMETHIONINE MODRES 3A1S MSE B 16 MET SELENOMETHIONINE MODRES 3A1S MSE B 120 MET SELENOMETHIONINE MODRES 3A1S MSE B 128 MET SELENOMETHIONINE MODRES 3A1S MSE B 139 MET SELENOMETHIONINE HET MSE A 16 8 HET MSE A 120 8 HET MSE A 128 8 HET MSE A 139 8 HET MSE A 185 8 HET MSE B 16 8 HET MSE B 120 8 HET MSE B 128 8 HET MSE B 139 8 HET GDP A 1 28 HET MG A 3 1 HET MG A 4 1 HET MRD A 5 8 HET MPD A 6 8 HET GDP B 2 28 HET MPD B 7 8 HETNAM MSE SELENOMETHIONINE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 6 MRD C6 H14 O2 FORMUL 7 MPD 2(C6 H14 O2) FORMUL 10 HOH *539(H2 O) HELIX 1 1 GLY A 28 GLY A 38 1 11 HELIX 2 2 SER A 80 GLY A 93 1 14 HELIX 3 3 PRO A 107 GLU A 119 1 13 HELIX 4 4 ALA A 130 THR A 137 1 8 HELIX 5 5 ASP A 142 GLY A 151 1 10 HELIX 6 6 GLY A 164 LYS A 178 1 15 HELIX 7 7 GLY A 190 ARG A 205 1 16 HELIX 8 8 ASN A 212 SER A 222 1 11 HELIX 9 9 ASP A 224 LEU A 234 1 11 HELIX 10 10 SER A 240 ALA A 266 1 27 HELIX 11 11 GLY B 28 GLY B 38 1 11 HELIX 12 12 SER B 80 GLY B 93 1 14 HELIX 13 13 PRO B 107 GLU B 119 1 13 HELIX 14 14 ALA B 130 THR B 137 1 8 HELIX 15 15 ASP B 142 GLY B 151 1 10 HELIX 16 16 GLY B 164 GLN B 177 1 14 HELIX 17 17 GLY B 190 ASP B 206 1 17 HELIX 18 18 ASN B 212 SER B 222 1 11 HELIX 19 19 ASP B 224 LEU B 234 1 11 HELIX 20 20 SER B 240 ALA B 266 1 27 SHEET 1 A 7 GLN A 41 ASN A 45 0 SHEET 2 A 7 GLU A 52 TYR A 60 -1 O GLU A 55 N TYR A 42 SHEET 3 A 7 TYR A 63 ASP A 69 -1 O ILE A 65 N PHE A 58 SHEET 4 A 7 HIS A 15 ALA A 22 1 N HIS A 15 O THR A 64 SHEET 5 A 7 LEU A 97 ASP A 103 1 O ILE A 99 N ALA A 20 SHEET 6 A 7 VAL A 124 THR A 129 1 O ALA A 127 N ALA A 102 SHEET 7 A 7 VAL A 154 PHE A 156 1 O VAL A 155 N LEU A 126 SHEET 1 B 2 LYS A 140 ILE A 141 0 SHEET 2 B 2 PHE A 267 ALA A 268 -1 O ALA A 268 N LYS A 140 SHEET 1 C 7 GLN B 41 ASN B 45 0 SHEET 2 C 7 GLU B 52 TYR B 60 -1 O GLU B 55 N TYR B 42 SHEET 3 C 7 TYR B 63 ASP B 69 -1 O ILE B 65 N PHE B 58 SHEET 4 C 7 MSE B 16 ALA B 22 1 N VAL B 19 O ILE B 68 SHEET 5 C 7 LEU B 97 ASP B 103 1 O ILE B 99 N ALA B 20 SHEET 6 C 7 VAL B 124 THR B 129 1 O ALA B 127 N ALA B 102 SHEET 7 C 7 VAL B 154 PHE B 156 1 O VAL B 155 N LEU B 126 SHEET 1 D 2 LYS B 140 ILE B 141 0 SHEET 2 D 2 PHE B 267 ALA B 268 -1 O ALA B 268 N LYS B 140 LINK C HIS A 15 N MSE A 16 1555 1555 1.33 LINK C MSE A 16 N VAL A 17 1555 1555 1.33 LINK C GLU A 119 N MSE A 120 1555 1555 1.33 LINK C MSE A 120 N GLU A 121 1555 1555 1.33 LINK C ALA A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N THR A 129 1555 1555 1.33 LINK C GLY A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N LYS A 140 1555 1555 1.33 LINK C ARG A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N ILE A 186 1555 1555 1.33 LINK C HIS B 15 N MSE B 16 1555 1555 1.33 LINK C MSE B 16 N VAL B 17 1555 1555 1.33 LINK C GLU B 119 N MSE B 120 1555 1555 1.33 LINK C MSE B 120 N GLU B 121 1555 1555 1.33 LINK C ALA B 127 N MSE B 128 1555 1555 1.33 LINK C MSE B 128 N THR B 129 1555 1555 1.33 LINK C GLY B 138 N MSE B 139 1555 1555 1.33 LINK C MSE B 139 N LYS B 140 1555 1555 1.33 LINK O3B GDP A 1 MG MG A 3 1555 1555 2.07 LINK O3B GDP B 2 MG MG A 3 1555 1555 2.07 LINK MG MG A 3 O HOH B 278 1555 1555 2.23 LINK MG MG A 3 O HOH A 421 1555 1555 2.24 LINK MG MG A 3 O HOH A 272 1555 1555 2.14 LINK MG MG A 3 O HOH A 10 1555 1555 2.21 LINK MG MG A 4 O HOH A 426 1555 1555 2.45 LINK MG MG A 4 O HOH A 341 1555 1555 2.41 LINK MG MG A 4 O HOH A 381 1555 1555 2.41 LINK MG MG A 4 O HOH A 475 1555 1555 2.37 LINK MG MG A 4 O HOH B 404 1555 1555 2.41 SITE 1 AC1 28 HOH A 2 MG A 3 HOH A 9 HOH A 10 SITE 2 AC1 28 ASN A 26 VAL A 27 GLY A 28 LYS A 29 SITE 3 AC1 28 THR A 30 SER A 31 THR A 129 ALA A 130 SITE 4 AC1 28 ASP A 132 SER A 158 SER A 159 VAL A 160 SITE 5 AC1 28 HOH A 272 HOH A 273 HOH A 293 HOH A 305 SITE 6 AC1 28 HOH A 401 HOH A 408 HOH A 421 HOH A 426 SITE 7 AC1 28 HOH A 444 HOH A 458 HOH B 278 HOH B 376 SITE 1 AC2 6 GDP A 1 HOH A 10 HOH A 272 HOH A 421 SITE 2 AC2 6 GDP B 2 HOH B 278 SITE 1 AC3 6 ASP A 103 HOH A 341 HOH A 381 HOH A 426 SITE 2 AC3 6 HOH A 475 HOH B 404 SITE 1 AC4 5 GLU A 196 LYS A 199 VAL A 200 PRO A 237 SITE 2 AC4 5 GLY B 62 SITE 1 AC5 5 ALA A 134 LYS A 135 MSE A 139 LYS A 140 SITE 2 AC5 5 ILE A 141 SITE 1 AC6 27 MG A 3 HOH A 10 HOH A 272 HOH A 348 SITE 2 AC6 27 HOH A 421 HOH A 444 HOH B 3 HOH B 4 SITE 3 AC6 27 MPD B 7 ASN B 26 VAL B 27 GLY B 28 SITE 4 AC6 27 LYS B 29 THR B 30 SER B 31 THR B 129 SITE 5 AC6 27 ALA B 130 ASP B 132 SER B 158 SER B 159 SITE 6 AC6 27 VAL B 160 HOH B 278 HOH B 279 HOH B 289 SITE 7 AC6 27 HOH B 309 HOH B 376 HOH B 395 SITE 1 AC7 10 HOH A 331 HOH A 473 GDP B 2 VAL B 27 SITE 2 AC7 10 ASP B 103 ALA B 130 GLU B 133 HOH B 342 SITE 3 AC7 10 HOH B 447 HOH B 512 CRYST1 107.166 109.723 46.496 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009331 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021507 0.00000