HEADER TRANSPORT PROTEIN 22-APR-09 3A1V TITLE CRYSTAL STRUCTUE OF THE CYTOSOLIC DOMAIN OF T. MARITIMA FEOB IRON TITLE 2 IRANSPORTER IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON(II) TRANSPORT PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 17-269; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0051; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FEOB, IRON TRANSPORTER, SMALL GTPASE, G PROTEIN, GDI, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.HATTORI,R.ISHITANI,O.NUREKI REVDAT 3 01-NOV-23 3A1V 1 REMARK SEQADV REVDAT 2 03-NOV-09 3A1V 1 JRNL REVDAT 1 22-SEP-09 3A1V 0 JRNL AUTH M.HATTORI,Y.JIN,H.NISHIMASU,Y.TANAKA,M.MOCHIZUKI,T.UCHIUMI, JRNL AUTH 2 R.ISHITANI,K.ITO,O.NUREKI JRNL TITL STRUCTURAL BASIS OF NOVEL INTERACTIONS BETWEEN THE JRNL TITL 2 SMALL-GTPASE AND GDI-LIKE DOMAINS IN PROKARYOTIC FEOB IRON JRNL TITL 3 TRANSPORTER JRNL REF STRUCTURE V. 17 1345 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19733088 JRNL DOI 10.1016/J.STR.2009.08.007 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 52.4 REMARK 3 NUMBER OF REFLECTIONS : 23720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8037 - 4.7981 0.99 3014 159 0.2188 0.2622 REMARK 3 2 4.7981 - 3.8091 0.99 2892 152 0.1707 0.1913 REMARK 3 3 3.8091 - 3.3278 1.00 2876 152 0.1919 0.2499 REMARK 3 4 3.3278 - 3.0237 1.00 2834 149 0.2110 0.2481 REMARK 3 5 3.0237 - 2.8070 1.00 2859 150 0.2054 0.2421 REMARK 3 6 2.8070 - 2.6415 0.99 2821 148 0.2091 0.2381 REMARK 3 7 2.6415 - 2.5092 0.97 2741 144 0.2130 0.2490 REMARK 3 8 2.5092 - 2.4000 0.89 2499 130 0.2141 0.2720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 82.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.590 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3876 REMARK 3 ANGLE : 0.664 5267 REMARK 3 CHIRALITY : 0.042 622 REMARK 3 PLANARITY : 0.003 659 REMARK 3 DIHEDRAL : 16.641 1374 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A 1-159 REMARK 3 ORIGIN FOR THE GROUP (A): -27.6720 -34.0914 -25.0686 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.2646 REMARK 3 T33: 0.3029 T12: -0.0140 REMARK 3 T13: 0.0017 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 1.7283 L22: 3.5964 REMARK 3 L33: 1.0445 L12: -1.9161 REMARK 3 L13: 0.5608 L23: -0.2332 REMARK 3 S TENSOR REMARK 3 S11: 0.1182 S12: 0.0337 S13: -0.1237 REMARK 3 S21: -0.1176 S22: -0.0640 S23: 0.3771 REMARK 3 S31: 0.1023 S32: -0.0165 S33: -0.0505 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A 160-178 REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.4691 T22: 0.6407 REMARK 3 T33: 0.4786 T12: 0.0491 REMARK 3 T13: 0.0220 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.0860 L22: 0.8458 REMARK 3 L33: 2.3427 L12: -1.1912 REMARK 3 L13: -0.1989 L23: 1.9301 REMARK 3 S TENSOR REMARK 3 S11: 0.4156 S12: 0.1954 S13: 0.2914 REMARK 3 S21: -0.3635 S22: 0.1055 S23: 0.1756 REMARK 3 S31: -1.0504 S32: 0.2636 S33: -0.2568 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A 179-191 REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.4169 T22: 0.2693 REMARK 3 T33: 0.5982 T12: -0.0096 REMARK 3 T13: -0.0351 T23: -0.1085 REMARK 3 L TENSOR REMARK 3 L11: 0.3335 L22: 0.3578 REMARK 3 L33: 1.6904 L12: -0.6130 REMARK 3 L13: 0.4073 L23: -1.5192 REMARK 3 S TENSOR REMARK 3 S11: 0.3155 S12: 0.0588 S13: -1.0210 REMARK 3 S21: -0.2051 S22: 0.4353 S23: 0.5822 REMARK 3 S31: 0.3681 S32: 0.1213 S33: -0.4042 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A 192-240 REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.2992 T22: 0.3558 REMARK 3 T33: 0.4745 T12: 0.0516 REMARK 3 T13: 0.0719 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 0.5593 L22: 1.0188 REMARK 3 L33: 0.8678 L12: -0.7629 REMARK 3 L13: -0.3736 L23: -0.7506 REMARK 3 S TENSOR REMARK 3 S11: 0.0696 S12: 0.1056 S13: 0.0797 REMARK 3 S21: -0.1311 S22: -0.2084 S23: -0.5687 REMARK 3 S31: 0.1731 S32: 0.4225 S33: 0.0332 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A 240-266 REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.3468 T22: 0.3326 REMARK 3 T33: 0.4014 T12: 0.0087 REMARK 3 T13: -0.0149 T23: -0.1049 REMARK 3 L TENSOR REMARK 3 L11: 2.3515 L22: 3.5712 REMARK 3 L33: 1.1370 L12: -2.3253 REMARK 3 L13: 0.6246 L23: -0.3502 REMARK 3 S TENSOR REMARK 3 S11: -0.3753 S12: -0.3579 S13: 0.6074 REMARK 3 S21: 0.9443 S22: 0.1827 S23: -0.5502 REMARK 3 S31: -0.2500 S32: 0.0520 S33: 0.1061 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B 1-159 REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.8452 T22: 0.4781 REMARK 3 T33: 0.1880 T12: -0.3822 REMARK 3 T13: 0.1865 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 2.2442 L22: 1.7309 REMARK 3 L33: 0.9447 L12: 0.3804 REMARK 3 L13: 0.0169 L23: -0.0533 REMARK 3 S TENSOR REMARK 3 S11: -0.5311 S12: 0.4472 S13: 0.1024 REMARK 3 S21: -0.9776 S22: 0.6582 S23: -0.3017 REMARK 3 S31: 0.1692 S32: -0.2383 S33: -0.0271 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B 160-178 REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 1.5981 T22: 1.1768 REMARK 3 T33: 0.8073 T12: -0.3983 REMARK 3 T13: 0.2081 T23: 0.1457 REMARK 3 L TENSOR REMARK 3 L11: 0.4527 L22: 0.3999 REMARK 3 L33: 0.1662 L12: 0.1293 REMARK 3 L13: 0.2223 L23: 0.1375 REMARK 3 S TENSOR REMARK 3 S11: -0.3706 S12: 1.0825 S13: 0.4659 REMARK 3 S21: -1.2672 S22: 0.4363 S23: -0.1846 REMARK 3 S31: -0.2028 S32: -0.0641 S33: -0.0391 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B 179-191 REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 1.2772 T22: 1.1092 REMARK 3 T33: 0.5787 T12: -0.4098 REMARK 3 T13: -0.2901 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.5124 L22: 0.4639 REMARK 3 L33: 0.0372 L12: 0.1046 REMARK 3 L13: -0.5584 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: 0.4450 S12: 0.4417 S13: 0.1868 REMARK 3 S21: -0.2590 S22: 0.0803 S23: 0.1454 REMARK 3 S31: 0.0229 S32: 0.7478 S33: -0.5164 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B 192-240 REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.4887 T22: 0.4204 REMARK 3 T33: 0.7386 T12: -0.0656 REMARK 3 T13: -0.3436 T23: 0.1234 REMARK 3 L TENSOR REMARK 3 L11: 1.3139 L22: 0.5710 REMARK 3 L33: 0.3946 L12: 0.6007 REMARK 3 L13: 0.3310 L23: 0.3890 REMARK 3 S TENSOR REMARK 3 S11: -0.5321 S12: 0.0834 S13: 0.9263 REMARK 3 S21: -0.2104 S22: 0.4314 S23: 1.1634 REMARK 3 S31: -0.2604 S32: -0.1611 S33: 0.1607 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B 240-266 REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 1.0589 T22: 0.7462 REMARK 3 T33: 0.3359 T12: -0.4001 REMARK 3 T13: -0.1864 T23: -0.0890 REMARK 3 L TENSOR REMARK 3 L11: 0.9075 L22: 0.6581 REMARK 3 L33: -0.0654 L12: 0.5795 REMARK 3 L13: -0.3724 L23: -0.3116 REMARK 3 S TENSOR REMARK 3 S11: -0.7270 S12: 0.7798 S13: -0.6471 REMARK 3 S21: -1.4007 S22: 0.5514 S23: 0.5983 REMARK 3 S31: 0.1172 S32: -0.0353 S33: -0.0884 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3A1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000028706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23720 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3A1S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 62-64% MPD, 0.1M HEPES, PH7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.71300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.23650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.77800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.23650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.71300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.77800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 PRO A 13 REMARK 465 LEU A 14 REMARK 465 ILE A 181 REMARK 465 LEU A 182 REMARK 465 ASP A 269 REMARK 465 GLY B 12 REMARK 465 PRO B 13 REMARK 465 LEU B 14 REMARK 465 HIS B 15 REMARK 465 GLY B 56 REMARK 465 ALA B 130 REMARK 465 ILE B 131 REMARK 465 ASP B 132 REMARK 465 GLU B 133 REMARK 465 ALA B 134 REMARK 465 PHE B 267 REMARK 465 ALA B 268 REMARK 465 ASP B 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 16 CE REMARK 470 LYS A 18 CE NZ REMARK 470 ASN A 26 CG OD1 ND2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 148 CD CE NZ REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 LYS A 178 CE NZ REMARK 470 ASN A 179 CG OD1 ND2 REMARK 470 HIS A 183 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 ALA A 268 O REMARK 470 MET B 16 CG SD CE REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 ASN B 66 CG OD1 ND2 REMARK 470 LEU B 67 CG CD1 CD2 REMARK 470 LEU B 111 CG CD1 CD2 REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 MET B 139 CG SD CE REMARK 470 LYS B 140 CG CD CE NZ REMARK 470 ILE B 141 CG1 CG2 CD1 REMARK 470 ASP B 142 CG OD1 OD2 REMARK 470 ARG B 143 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 144 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 470 LEU B 146 CG CD1 CD2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 HIS B 149 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 156 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 157 OG1 CG2 REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 LEU B 165 CG CD1 CD2 REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 LEU B 168 CG CD1 CD2 REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 GLN B 177 CG CD OE1 NE2 REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 ARG B 184 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 191 CG CD OE1 OE2 REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 206 CG OD1 OD2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 LYS B 233 CG CD CE NZ REMARK 470 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 257 CG CD OE1 OE2 REMARK 470 LYS B 264 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 44 -149.74 -92.80 REMARK 500 LEU A 76 67.80 -113.86 REMARK 500 TYR A 78 51.53 -152.72 REMARK 500 SER A 79 -51.07 -122.68 REMARK 500 ARG A 184 -35.92 -137.36 REMARK 500 ILE A 186 -61.90 -126.87 REMARK 500 LYS A 208 78.93 -103.09 REMARK 500 ALA B 44 -139.05 -124.75 REMARK 500 LEU B 76 66.22 -104.28 REMARK 500 TYR B 78 50.37 -148.44 REMARK 500 GLU B 121 40.98 70.92 REMARK 500 SER B 159 97.54 -64.20 REMARK 500 VAL B 160 -21.64 69.26 REMARK 500 MET B 185 99.82 -53.78 REMARK 500 ILE B 186 74.16 -115.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AIS RELATED DB: PDB REMARK 900 RELATED ID: 3AIT RELATED DB: PDB REMARK 900 RELATED ID: 3AIU RELATED DB: PDB REMARK 900 RELATED ID: 3AIW RELATED DB: PDB DBREF 3A1V A 17 269 UNP Q9WXQ8 Q9WXQ8_THEMA 17 269 DBREF 3A1V B 17 269 UNP Q9WXQ8 Q9WXQ8_THEMA 17 269 SEQADV 3A1V GLY A 12 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1V PRO A 13 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1V LEU A 14 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1V HIS A 15 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1V MET A 16 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1V GLY B 12 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1V PRO B 13 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1V LEU B 14 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1V HIS B 15 UNP Q9WXQ8 EXPRESSION TAG SEQADV 3A1V MET B 16 UNP Q9WXQ8 EXPRESSION TAG SEQRES 1 A 258 GLY PRO LEU HIS MET VAL LYS VAL ALA LEU ALA GLY CYS SEQRES 2 A 258 PRO ASN VAL GLY LYS THR SER LEU PHE ASN ALA LEU THR SEQRES 3 A 258 GLY THR LYS GLN TYR VAL ALA ASN TRP PRO GLY VAL THR SEQRES 4 A 258 VAL GLU LYS LYS GLU GLY VAL PHE THR TYR LYS GLY TYR SEQRES 5 A 258 THR ILE ASN LEU ILE ASP LEU PRO GLY THR TYR SER LEU SEQRES 6 A 258 GLY TYR SER SER ILE ASP GLU LYS ILE ALA ARG ASP TYR SEQRES 7 A 258 LEU LEU LYS GLY ASP ALA ASP LEU VAL ILE LEU VAL ALA SEQRES 8 A 258 ASP SER VAL ASN PRO GLU GLN SER LEU TYR LEU LEU LEU SEQRES 9 A 258 GLU ILE LEU GLU MET GLU LYS LYS VAL ILE LEU ALA MET SEQRES 10 A 258 THR ALA ILE ASP GLU ALA LYS LYS THR GLY MET LYS ILE SEQRES 11 A 258 ASP ARG TYR GLU LEU GLN LYS HIS LEU GLY ILE PRO VAL SEQRES 12 A 258 VAL PHE THR SER SER VAL THR GLY GLU GLY LEU GLU GLU SEQRES 13 A 258 LEU LYS GLU LYS ILE VAL GLU TYR ALA GLN LYS ASN THR SEQRES 14 A 258 ILE LEU HIS ARG MET ILE LEU ASP TYR GLY GLU LYS VAL SEQRES 15 A 258 GLU SER GLU ILE LYS LYS VAL GLU ASN PHE LEU ARG ASP SEQRES 16 A 258 LYS LYS LEU ARG ILE ASN PRO ARG TYR PHE ALA LEU LYS SEQRES 17 A 258 TYR LEU SER GLY ASP PRO GLU PHE TYR SER GLU GLY VAL SEQRES 18 A 258 LYS LEU GLY LEU PRO GLU LEU SER GLU GLU GLU ARG ILE SEQRES 19 A 258 GLY TYR ARG LEU LEU ILE ALA LYS ARG LYS ARG GLU TYR SEQRES 20 A 258 VAL GLU ASN VAL VAL LYS GLU ALA PHE ALA ASP SEQRES 1 B 258 GLY PRO LEU HIS MET VAL LYS VAL ALA LEU ALA GLY CYS SEQRES 2 B 258 PRO ASN VAL GLY LYS THR SER LEU PHE ASN ALA LEU THR SEQRES 3 B 258 GLY THR LYS GLN TYR VAL ALA ASN TRP PRO GLY VAL THR SEQRES 4 B 258 VAL GLU LYS LYS GLU GLY VAL PHE THR TYR LYS GLY TYR SEQRES 5 B 258 THR ILE ASN LEU ILE ASP LEU PRO GLY THR TYR SER LEU SEQRES 6 B 258 GLY TYR SER SER ILE ASP GLU LYS ILE ALA ARG ASP TYR SEQRES 7 B 258 LEU LEU LYS GLY ASP ALA ASP LEU VAL ILE LEU VAL ALA SEQRES 8 B 258 ASP SER VAL ASN PRO GLU GLN SER LEU TYR LEU LEU LEU SEQRES 9 B 258 GLU ILE LEU GLU MET GLU LYS LYS VAL ILE LEU ALA MET SEQRES 10 B 258 THR ALA ILE ASP GLU ALA LYS LYS THR GLY MET LYS ILE SEQRES 11 B 258 ASP ARG TYR GLU LEU GLN LYS HIS LEU GLY ILE PRO VAL SEQRES 12 B 258 VAL PHE THR SER SER VAL THR GLY GLU GLY LEU GLU GLU SEQRES 13 B 258 LEU LYS GLU LYS ILE VAL GLU TYR ALA GLN LYS ASN THR SEQRES 14 B 258 ILE LEU HIS ARG MET ILE LEU ASP TYR GLY GLU LYS VAL SEQRES 15 B 258 GLU SER GLU ILE LYS LYS VAL GLU ASN PHE LEU ARG ASP SEQRES 16 B 258 LYS LYS LEU ARG ILE ASN PRO ARG TYR PHE ALA LEU LYS SEQRES 17 B 258 TYR LEU SER GLY ASP PRO GLU PHE TYR SER GLU GLY VAL SEQRES 18 B 258 LYS LEU GLY LEU PRO GLU LEU SER GLU GLU GLU ARG ILE SEQRES 19 B 258 GLY TYR ARG LEU LEU ILE ALA LYS ARG LYS ARG GLU TYR SEQRES 20 B 258 VAL GLU ASN VAL VAL LYS GLU ALA PHE ALA ASP HET SO4 A 4 5 HET MPD A 5 8 HET EPE A 6 15 HET MRD B 1 8 HET MPD B 2 8 HET SO4 B 3 5 HETNAM SO4 SULFATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETSYN EPE HEPES FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 MPD 2(C6 H14 O2) FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 6 MRD C6 H14 O2 FORMUL 9 HOH *130(H2 O) HELIX 1 1 GLY A 28 GLY A 38 1 11 HELIX 2 2 SER A 80 GLY A 93 1 14 HELIX 3 3 PRO A 107 GLU A 119 1 13 HELIX 4 4 ALA A 130 THR A 137 1 8 HELIX 5 5 ASP A 142 GLY A 151 1 10 HELIX 6 6 GLY A 164 GLN A 177 1 14 HELIX 7 7 TYR A 189 ARG A 205 1 17 HELIX 8 8 ASN A 212 SER A 222 1 11 HELIX 9 9 ASP A 224 LEU A 234 1 11 HELIX 10 10 SER A 240 PHE A 267 1 28 HELIX 11 11 GLY B 28 GLY B 38 1 11 HELIX 12 12 SER B 80 GLY B 93 1 14 HELIX 13 13 PRO B 107 GLU B 119 1 13 HELIX 14 14 ASP B 142 GLY B 151 1 10 HELIX 15 15 GLY B 164 LYS B 178 1 15 HELIX 16 16 GLY B 190 LEU B 204 1 15 HELIX 17 17 ASN B 212 SER B 222 1 11 HELIX 18 18 GLU B 226 GLY B 235 1 10 HELIX 19 19 SER B 240 GLU B 265 1 26 SHEET 1 A 7 GLN A 41 ASN A 45 0 SHEET 2 A 7 GLU A 52 TYR A 60 -1 O GLU A 55 N TYR A 42 SHEET 3 A 7 TYR A 63 ASP A 69 -1 O ASP A 69 N LYS A 54 SHEET 4 A 7 MET A 16 ALA A 22 1 N LEU A 21 O ILE A 68 SHEET 5 A 7 LEU A 97 ASP A 103 1 O ILE A 99 N ALA A 20 SHEET 6 A 7 VAL A 124 THR A 129 1 O ALA A 127 N ALA A 102 SHEET 7 A 7 VAL A 154 PHE A 156 1 O VAL A 155 N LEU A 126 SHEET 1 B 6 PHE B 58 TYR B 60 0 SHEET 2 B 6 TYR B 63 ASP B 69 -1 O TYR B 63 N TYR B 60 SHEET 3 B 6 VAL B 17 ALA B 22 1 N LEU B 21 O ILE B 68 SHEET 4 B 6 LEU B 97 VAL B 101 1 O ILE B 99 N ALA B 22 SHEET 5 B 6 VAL B 124 ALA B 127 1 O ALA B 127 N LEU B 100 SHEET 6 B 6 VAL B 154 VAL B 155 1 O VAL B 155 N LEU B 126 SHEET 1 C 2 TYR B 42 ASN B 45 0 SHEET 2 C 2 GLU B 52 GLU B 55 -1 O LYS B 53 N ALA B 44 SITE 1 AC1 8 ASN A 26 VAL A 27 GLY A 28 LYS A 29 SITE 2 AC1 8 THR A 30 SER A 31 HOH A 280 HOH A 282 SITE 1 AC2 1 GLU A 230 SITE 1 AC3 8 ASN A 26 GLY A 28 SER A 31 ASP A 103 SITE 2 AC3 8 ASN A 106 ALA A 130 HOH A 286 HOH A 306 SITE 1 AC4 5 MPD B 2 SER B 222 GLY B 223 PRO B 225 SITE 2 AC4 5 ARG B 248 SITE 1 AC5 7 SER A 222 GLY A 223 PRO A 225 ARG A 248 SITE 2 AC5 7 HOH A 311 MRD B 1 GLU B 241 SITE 1 AC6 4 ASN B 26 GLY B 28 SER B 31 HOH B 289 CRYST1 57.426 81.556 128.473 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007784 0.00000