HEADER RIBOSOMAL PROTEIN 25-APR-09 3A1Y TITLE THE STRUCTURE OF ARCHAEAL RIBOSOMAL STALK P1/P0 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN P1 (L12P); COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 1-58; COMPND 5 SYNONYM: 50S RIBOSOMAL PROTEIN L12P; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACIDIC RIBOSOMAL PROTEIN P0; COMPND 9 CHAIN: G; COMPND 10 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 1-284; COMPND 11 SYNONYM: L10E, ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: PH1998; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 13 ORGANISM_TAXID: 53953; SOURCE 14 STRAIN: OT3; SOURCE 15 GENE: PH1999; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28C KEYWDS STALK, RIBOSOMAL PROTEIN, HELIX SPIN, RIBONUCLEOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.NAGANUMA,M.YAO,N.NOMURA,J.YU,T.UCHIUMI,I.TANAKA REVDAT 6 13-MAR-24 3A1Y 1 REMARK REVDAT 5 11-OCT-17 3A1Y 1 REMARK REVDAT 4 15-JAN-14 3A1Y 1 TITLE REVDAT 3 13-JUL-11 3A1Y 1 VERSN REVDAT 2 09-MAR-10 3A1Y 1 JRNL REVDAT 1 17-NOV-09 3A1Y 0 JRNL AUTH T.NAGANUMA,N.NOMURA,M.YAO,M.MOCHIZUKI,T.UCHIUMI,I.TANAKA JRNL TITL STRUCTURAL BASIS FOR TRANSLATION FACTOR RECRUITMENT TO THE JRNL TITL 2 EUKARYOTIC/ARCHAEAL RIBOSOMES JRNL REF J.BIOL.CHEM. V. 285 4747 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20007716 JRNL DOI 10.1074/JBC.M109.068098 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 44207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3131 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2754 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 210 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4298 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 429 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.806 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4344 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5876 ; 1.552 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 551 ; 6.180 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;37.273 ;26.452 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 808 ;20.973 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.148 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 708 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3156 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2332 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3026 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 281 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.207 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2872 ; 0.672 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4437 ; 1.104 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1653 ; 1.812 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1439 ; 2.859 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 207 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5578 61.8265 109.1790 REMARK 3 T TENSOR REMARK 3 T11: -0.0902 T22: -0.1449 REMARK 3 T33: -0.0439 T12: -0.0701 REMARK 3 T13: 0.0501 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 4.4872 L22: 5.9935 REMARK 3 L33: 5.1077 L12: 0.6046 REMARK 3 L13: -1.1645 L23: -1.8888 REMARK 3 S TENSOR REMARK 3 S11: 0.2437 S12: -0.2868 S13: 0.2959 REMARK 3 S21: 0.3882 S22: -0.3502 S23: -0.4341 REMARK 3 S31: -0.4361 S32: 0.2334 S33: 0.1066 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 208 G 233 REMARK 3 RESIDUE RANGE : E 1 E 58 REMARK 3 RESIDUE RANGE : F 1 F 58 REMARK 3 ORIGIN FOR THE GROUP (A): 41.3444 28.1471 93.3429 REMARK 3 T TENSOR REMARK 3 T11: -0.1314 T22: -0.0660 REMARK 3 T33: -0.0915 T12: 0.0146 REMARK 3 T13: 0.0205 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.3390 L22: 4.1711 REMARK 3 L33: 2.9228 L12: 0.4004 REMARK 3 L13: 0.5495 L23: 1.1593 REMARK 3 S TENSOR REMARK 3 S11: 0.1233 S12: 0.0128 S13: 0.0958 REMARK 3 S21: 0.1417 S22: -0.1095 S23: 0.2599 REMARK 3 S31: 0.1292 S32: 0.0135 S33: -0.0138 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 234 G 259 REMARK 3 RESIDUE RANGE : C 1 C 56 REMARK 3 RESIDUE RANGE : D 1 D 58 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5605 5.4194 73.1313 REMARK 3 T TENSOR REMARK 3 T11: 0.0208 T22: -0.0900 REMARK 3 T33: -0.0917 T12: 0.0769 REMARK 3 T13: -0.1442 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.4498 L22: 1.7280 REMARK 3 L33: 3.7041 L12: -0.2555 REMARK 3 L13: 0.0793 L23: 1.0844 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: 0.1371 S13: -0.1111 REMARK 3 S21: 0.1960 S22: 0.1127 S23: -0.0555 REMARK 3 S31: 0.4505 S32: 0.2537 S33: -0.1793 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 260 G 283 REMARK 3 RESIDUE RANGE : A 1 A 58 REMARK 3 RESIDUE RANGE : B 1 B 58 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3415 8.6683 43.0414 REMARK 3 T TENSOR REMARK 3 T11: -0.1233 T22: -0.0100 REMARK 3 T33: -0.0908 T12: 0.0290 REMARK 3 T13: -0.0157 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 1.9925 L22: 3.3158 REMARK 3 L33: 2.7408 L12: -0.7249 REMARK 3 L13: 0.3415 L23: -0.2451 REMARK 3 S TENSOR REMARK 3 S11: 0.1065 S12: 0.1304 S13: -0.0851 REMARK 3 S21: -0.1955 S22: 0.0468 S23: -0.3379 REMARK 3 S31: 0.2911 S32: 0.2474 S33: -0.1533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000028709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2-4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44207 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.10600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40800 REMARK 200 R SYM FOR SHELL (I) : 0.40800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SOLVE, RESOLVE, OASIS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MGCL2, 0.1M NA-ACETATE REMARK 280 TRIHYDRATE, 6-10% PEG 6000, PH 4.2-4.4, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.44000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.11150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.21450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.11150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.44000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.21450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA G 110 REMARK 465 PRO G 111 REMARK 465 ALA G 112 REMARK 465 LYS G 113 REMARK 465 PRO G 114 REMARK 465 GLY G 115 REMARK 465 ALA G 116 REMARK 465 VAL G 117 REMARK 465 VAL G 118 REMARK 465 PRO G 119 REMARK 465 LYS G 120 REMARK 465 ASP G 121 REMARK 465 VAL G 122 REMARK 465 VAL G 123 REMARK 465 VAL G 124 REMARK 465 PRO G 125 REMARK 465 ALA G 126 REMARK 465 GLY G 127 REMARK 465 PRO G 128 REMARK 465 THR G 129 REMARK 465 PRO G 130 REMARK 465 LEU G 131 REMARK 465 ALA G 132 REMARK 465 PRO G 133 REMARK 465 GLY G 134 REMARK 465 PRO G 135 REMARK 465 ILE G 136 REMARK 465 VAL G 137 REMARK 465 GLY G 138 REMARK 465 GLN G 139 REMARK 465 MET G 140 REMARK 465 GLN G 141 REMARK 465 ALA G 142 REMARK 465 LEU G 143 REMARK 465 GLY G 144 REMARK 465 ILE G 145 REMARK 465 PRO G 146 REMARK 465 ALA G 147 REMARK 465 ARG G 148 REMARK 465 ILE G 149 REMARK 465 GLU G 150 REMARK 465 LYS G 151 REMARK 465 GLY G 152 REMARK 465 LYS G 153 REMARK 465 VAL G 154 REMARK 465 THR G 155 REMARK 465 ILE G 156 REMARK 465 GLN G 157 REMARK 465 LYS G 158 REMARK 465 ASP G 159 REMARK 465 THR G 160 REMARK 465 THR G 161 REMARK 465 VAL G 162 REMARK 465 LEU G 163 REMARK 465 LYS G 164 REMARK 465 ALA G 165 REMARK 465 GLY G 166 REMARK 465 GLU G 167 REMARK 465 VAL G 168 REMARK 465 ILE G 169 REMARK 465 THR G 170 REMARK 465 PRO G 171 REMARK 465 GLU G 172 REMARK 465 LEU G 173 REMARK 465 ALA G 174 REMARK 465 ASN G 175 REMARK 465 ILE G 176 REMARK 465 LEU G 177 REMARK 465 ASN G 178 REMARK 465 ALA G 179 REMARK 465 LEU G 180 REMARK 465 GLY G 181 REMARK 465 ILE G 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET F 1 CA - CB - CG ANGL. DEV. = -10.6 DEGREES REMARK 500 LEU G 90 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 PRO G 184 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 56 38.32 -89.45 REMARK 500 ALA E 57 -112.70 -142.53 REMARK 500 ALA F 57 42.47 39.74 REMARK 500 ALA G 2 12.40 -143.23 REMARK 500 VAL G 4 -131.41 -145.34 REMARK 500 ARG G 56 -82.66 -123.32 REMARK 500 GLU G 61 1.82 144.39 REMARK 500 LYS G 69 -142.96 -130.92 REMARK 500 LEU G 71 -141.34 -100.58 REMARK 500 PRO G 74 -139.25 -107.27 REMARK 500 LEU G 76 -97.80 -28.06 REMARK 500 LYS G 78 -156.94 -76.09 REMARK 500 LEU G 79 -75.21 -105.45 REMARK 500 VAL G 80 61.10 -156.13 REMARK 500 GLU G 81 98.32 -12.46 REMARK 500 TYR G 82 14.89 -69.39 REMARK 500 ASN G 106 74.44 -115.86 REMARK 500 PRO G 184 27.00 -55.46 REMARK 500 ASP G 197 64.41 32.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU G 61 LEU G 62 147.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 3A1Y A 1 58 UNP O57705 RL12_PYRHO 1 58 DBREF 3A1Y B 1 58 UNP O57705 RL12_PYRHO 1 58 DBREF 3A1Y C 1 58 UNP O57705 RL12_PYRHO 1 58 DBREF 3A1Y D 1 58 UNP O57705 RL12_PYRHO 1 58 DBREF 3A1Y E 1 58 UNP O57705 RL12_PYRHO 1 58 DBREF 3A1Y F 1 58 UNP O57705 RL12_PYRHO 1 58 DBREF 3A1Y G 1 284 UNP O74109 RLA0_PYRHO 1 284 SEQRES 1 A 58 MET GLU TYR VAL TYR ALA ALA LEU LEU LEU HIS SER VAL SEQRES 2 A 58 GLY LYS GLU ILE ASN GLU GLU ASN LEU LYS ALA VAL LEU SEQRES 3 A 58 GLN ALA ALA GLY VAL GLU PRO GLU GLU ALA ARG ILE LYS SEQRES 4 A 58 ALA LEU VAL ALA ALA LEU GLU GLY VAL ASN ILE ASP GLU SEQRES 5 A 58 VAL ILE GLU LYS ALA ALA SEQRES 1 B 58 MET GLU TYR VAL TYR ALA ALA LEU LEU LEU HIS SER VAL SEQRES 2 B 58 GLY LYS GLU ILE ASN GLU GLU ASN LEU LYS ALA VAL LEU SEQRES 3 B 58 GLN ALA ALA GLY VAL GLU PRO GLU GLU ALA ARG ILE LYS SEQRES 4 B 58 ALA LEU VAL ALA ALA LEU GLU GLY VAL ASN ILE ASP GLU SEQRES 5 B 58 VAL ILE GLU LYS ALA ALA SEQRES 1 C 58 MET GLU TYR VAL TYR ALA ALA LEU LEU LEU HIS SER VAL SEQRES 2 C 58 GLY LYS GLU ILE ASN GLU GLU ASN LEU LYS ALA VAL LEU SEQRES 3 C 58 GLN ALA ALA GLY VAL GLU PRO GLU GLU ALA ARG ILE LYS SEQRES 4 C 58 ALA LEU VAL ALA ALA LEU GLU GLY VAL ASN ILE ASP GLU SEQRES 5 C 58 VAL ILE GLU LYS ALA ALA SEQRES 1 D 58 MET GLU TYR VAL TYR ALA ALA LEU LEU LEU HIS SER VAL SEQRES 2 D 58 GLY LYS GLU ILE ASN GLU GLU ASN LEU LYS ALA VAL LEU SEQRES 3 D 58 GLN ALA ALA GLY VAL GLU PRO GLU GLU ALA ARG ILE LYS SEQRES 4 D 58 ALA LEU VAL ALA ALA LEU GLU GLY VAL ASN ILE ASP GLU SEQRES 5 D 58 VAL ILE GLU LYS ALA ALA SEQRES 1 E 58 MET GLU TYR VAL TYR ALA ALA LEU LEU LEU HIS SER VAL SEQRES 2 E 58 GLY LYS GLU ILE ASN GLU GLU ASN LEU LYS ALA VAL LEU SEQRES 3 E 58 GLN ALA ALA GLY VAL GLU PRO GLU GLU ALA ARG ILE LYS SEQRES 4 E 58 ALA LEU VAL ALA ALA LEU GLU GLY VAL ASN ILE ASP GLU SEQRES 5 E 58 VAL ILE GLU LYS ALA ALA SEQRES 1 F 58 MET GLU TYR VAL TYR ALA ALA LEU LEU LEU HIS SER VAL SEQRES 2 F 58 GLY LYS GLU ILE ASN GLU GLU ASN LEU LYS ALA VAL LEU SEQRES 3 F 58 GLN ALA ALA GLY VAL GLU PRO GLU GLU ALA ARG ILE LYS SEQRES 4 F 58 ALA LEU VAL ALA ALA LEU GLU GLY VAL ASN ILE ASP GLU SEQRES 5 F 58 VAL ILE GLU LYS ALA ALA SEQRES 1 G 284 MET ALA HIS VAL ALA GLU TRP LYS LYS LYS GLU VAL GLU SEQRES 2 G 284 GLU LEU ALA LYS LEU ILE LYS SER TYR PRO VAL ILE ALA SEQRES 3 G 284 LEU VAL ASP VAL SER SER MET PRO ALA TYR PRO LEU SER SEQRES 4 G 284 GLN MET ARG ARG LEU ILE ARG GLU ASN GLY GLY LEU LEU SEQRES 5 G 284 ARG VAL SER ARG ASN THR LEU ILE GLU LEU ALA ILE LYS SEQRES 6 G 284 LYS ALA ALA LYS GLU LEU GLY LYS PRO GLU LEU GLU LYS SEQRES 7 G 284 LEU VAL GLU TYR ILE ASP ARG GLY ALA GLY ILE LEU VAL SEQRES 8 G 284 THR ASN MET ASN PRO PHE LYS LEU TYR LYS PHE LEU GLN SEQRES 9 G 284 GLN ASN ARG GLN PRO ALA PRO ALA LYS PRO GLY ALA VAL SEQRES 10 G 284 VAL PRO LYS ASP VAL VAL VAL PRO ALA GLY PRO THR PRO SEQRES 11 G 284 LEU ALA PRO GLY PRO ILE VAL GLY GLN MET GLN ALA LEU SEQRES 12 G 284 GLY ILE PRO ALA ARG ILE GLU LYS GLY LYS VAL THR ILE SEQRES 13 G 284 GLN LYS ASP THR THR VAL LEU LYS ALA GLY GLU VAL ILE SEQRES 14 G 284 THR PRO GLU LEU ALA ASN ILE LEU ASN ALA LEU GLY ILE SEQRES 15 G 284 GLN PRO LEU GLU VAL GLY LEU ASP VAL LEU ALA VAL TYR SEQRES 16 G 284 GLU ASP GLY ILE VAL TYR THR PRO ASP VAL LEU ALA ILE SEQRES 17 G 284 ASP GLU GLN GLU TYR ILE ASP MET LEU GLN LYS ALA TYR SEQRES 18 G 284 MET HIS ALA PHE ASN LEU ALA VAL ASN ILE ALA TYR PRO SEQRES 19 G 284 THR PRO GLU THR ILE GLU ALA ILE ILE GLN LYS ALA PHE SEQRES 20 G 284 LEU ASN ALA LYS THR VAL ALA ILE GLU ALA GLY TYR ILE SEQRES 21 G 284 THR LYS GLU THR ILE GLN ASP ILE ILE GLY ARG ALA PHE SEQRES 22 G 284 ARG ALA MET LEU LEU LEU ALA GLN GLN LEU PRO FORMUL 8 HOH *429(H2 O) HELIX 1 1 MET A 1 VAL A 13 1 13 HELIX 2 2 ASN A 18 ALA A 29 1 12 HELIX 3 3 GLU A 34 GLU A 46 1 13 HELIX 4 4 ASN A 49 ALA A 58 1 10 HELIX 5 5 MET B 1 GLY B 14 1 14 HELIX 6 6 ASN B 18 ALA B 29 1 12 HELIX 7 7 GLU B 34 LEU B 45 1 12 HELIX 8 8 ASN B 49 LYS B 56 1 8 HELIX 9 9 MET C 1 VAL C 13 1 13 HELIX 10 10 ASN C 18 ALA C 29 1 12 HELIX 11 11 GLU C 34 LEU C 45 1 12 HELIX 12 12 ASN C 49 LYS C 56 1 8 HELIX 13 13 MET D 1 VAL D 13 1 13 HELIX 14 14 ASN D 18 ALA D 29 1 12 HELIX 15 15 GLU D 34 LEU D 45 1 12 HELIX 16 16 ASN D 49 LYS D 56 1 8 HELIX 17 17 MET E 1 VAL E 13 1 13 HELIX 18 18 ASN E 18 ALA E 29 1 12 HELIX 19 19 GLU E 34 LEU E 45 1 12 HELIX 20 20 ASN E 49 ILE E 54 1 6 HELIX 21 21 MET F 1 VAL F 13 1 13 HELIX 22 22 ASN F 18 ALA F 29 1 12 HELIX 23 23 GLU F 34 GLU F 46 1 13 HELIX 24 24 ASN F 49 LYS F 56 1 8 HELIX 25 25 LYS G 10 LYS G 20 1 11 HELIX 26 26 PRO G 34 ASN G 48 1 15 HELIX 27 27 GLU G 61 LYS G 69 1 9 HELIX 28 28 ASN G 95 ASN G 106 1 12 HELIX 29 29 THR G 202 ALA G 207 1 6 HELIX 30 30 ASP G 209 ALA G 232 1 24 HELIX 31 31 THR G 238 ALA G 257 1 20 HELIX 32 32 THR G 264 GLN G 281 1 18 SHEET 1 A 5 GLY G 50 VAL G 54 0 SHEET 2 A 5 ALA G 87 THR G 92 -1 O ILE G 89 N ARG G 53 SHEET 3 A 5 VAL G 24 ASP G 29 -1 N ALA G 26 O LEU G 90 SHEET 4 A 5 ASP G 190 GLU G 196 -1 O TYR G 195 N ILE G 25 SHEET 5 A 5 ILE G 199 TYR G 201 -1 O TYR G 201 N VAL G 194 CISPEP 1 ALA G 5 GLU G 6 0 2.96 CISPEP 2 GLN G 108 PRO G 109 0 -7.37 CRYST1 54.880 104.429 136.223 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018222 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007341 0.00000