HEADER HYDROLASE 27-APR-09 3A23 TITLE CRYSTAL STRUCTURE OF BETA-L-ARABINOPYRANOSIDASE COMPLEXED WITH D- TITLE 2 GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SECRETED ALPHA-GALACTOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 45-658; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS; SOURCE 3 ORGANISM_TAXID: 33903; SOURCE 4 STRAIN: NBRC14893; SOURCE 5 GENE: AGAA2, SAV2186, SAV_2186; SOURCE 6 EXPRESSION_SYSTEM: STREPTOMYCES LIVIDANS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1916; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: 1326; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PIJ702 KEYWDS BETA-ALPHA-BARREL, GREEK KEY MOTIF, BETA-JELLYROLL, BETA-TREFOIL, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.FUJIMOTO,H.ICHINOSE,S.KANEKO REVDAT 5 01-NOV-23 3A23 1 HETSYN REVDAT 4 29-JUL-20 3A23 1 COMPND REMARK HETNAM SITE REVDAT 3 13-JUL-11 3A23 1 VERSN REVDAT 2 20-OCT-09 3A23 1 JRNL REVDAT 1 14-JUL-09 3A23 0 JRNL AUTH H.ICHINOSE,Z.FUJIMOTO,M.HONDA,K.HARAZONO,Y.NISHIMOTO, JRNL AUTH 2 A.UZURA,S.KANEKO JRNL TITL A BETA-L-ARABINOPYRANOSIDASE FROM STREPTOMYCES AVERMITILIS JRNL TITL 2 IS A NOVEL MEMBER OF GLYCOSIDE HYDROLASE FAMILY 27. JRNL REF J.BIOL.CHEM. V. 284 25097 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19608743 JRNL DOI 10.1074/JBC.M109.022723 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.FUJIMOTO,H.ICHINOSE,S.KANEKO REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 EXO-ALPHA-1,5-L-ARABINOFURANOSIDASE FROM STREPTOMYCES REMARK 1 TITL 3 AVERMITILIS NBRC14893. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 64 1007 2008 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 18997327 REMARK 1 DOI 10.1107/S1744309108029692 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 92727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4876 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6646 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.1510 REMARK 3 BIN FREE R VALUE SET COUNT : 345 REMARK 3 BIN FREE R VALUE : 0.1800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 222 REMARK 3 SOLVENT ATOMS : 1487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.199 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9533 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13019 ; 1.119 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1232 ; 6.361 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 379 ;36.558 ;24.934 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1339 ;10.988 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;10.617 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1477 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7177 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6073 ; 0.467 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9730 ; 0.840 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3460 ; 1.341 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3289 ; 2.083 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000028714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97694 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.28600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.5.0088 REMARK 200 STARTING MODEL: PDB ENTRY 3A21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M AMMONIUM SULFATE, 1.7% PEG 400, REMARK 280 15% GLYCEROL, 0.1M HEPES, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.12800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.81500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.54050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.81500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.12800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.54050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 45 REMARK 465 VAL B 46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 99 O6 GAL A 801 1.12 REMARK 500 OE1 GLU B 99 O6 GAL B 851 1.95 REMARK 500 O HOH B 1007 O HOH B 1229 1.99 REMARK 500 O HOH A 992 O HOH A 1374 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 67 -137.94 46.71 REMARK 500 ASP A 98 -153.58 -92.96 REMARK 500 SER A 162 46.17 -78.79 REMARK 500 TYR A 251 117.20 -39.10 REMARK 500 HIS A 274 160.38 176.48 REMARK 500 ASP A 282 171.01 99.74 REMARK 500 GLU A 349 73.48 -154.07 REMARK 500 THR A 411 -32.02 -134.67 REMARK 500 ASN A 478 -135.82 48.12 REMARK 500 ASN A 583 11.04 -153.06 REMARK 500 ALA B 67 -136.30 46.30 REMARK 500 ASP B 98 -151.46 -94.61 REMARK 500 SER B 162 45.05 -83.45 REMARK 500 HIS B 167 26.59 -140.23 REMARK 500 HIS B 274 160.89 177.99 REMARK 500 ASP B 282 172.45 100.16 REMARK 500 ASN B 329 109.25 -52.06 REMARK 500 GLU B 349 65.51 -157.05 REMARK 500 ASN B 466 46.64 -93.65 REMARK 500 ASN B 478 -131.95 44.84 REMARK 500 ASP B 561 128.85 -39.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PG A 962 REMARK 610 1PG B 963 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A21 RELATED DB: PDB REMARK 900 THE SAME PROTEIN (SUGAR-FREE) REMARK 900 RELATED ID: 3A22 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-ARABINOSE DBREF 3A23 A 45 658 UNP Q82L26 Q82L26_STRAW 45 658 DBREF 3A23 B 45 658 UNP Q82L26 Q82L26_STRAW 45 658 SEQRES 1 A 614 ALA VAL THR THR ARG GLN ILE THR VAL PRO SER ALA PRO SEQRES 2 A 614 MET GLY TRP ALA SER TRP ASN SER PHE ALA ALA LYS ILE SEQRES 3 A 614 ASP TYR SER VAL ILE LYS LYS GLN VAL ASP ALA PHE VAL SEQRES 4 A 614 ALA ALA GLY LEU PRO ALA ALA GLY TYR THR TYR ILE ASN SEQRES 5 A 614 ILE ASP GLU GLY TRP TRP GLN GLY THR ARG ASP SER ALA SEQRES 6 A 614 GLY ASN ILE THR VAL ASP THR ALA GLU TRP PRO GLY GLY SEQRES 7 A 614 MET SER ALA ILE THR ALA TYR ILE HIS SER LYS GLY LEU SEQRES 8 A 614 LYS ALA GLY ILE TYR THR ASP ALA GLY LYS ASP GLY CYS SEQRES 9 A 614 GLY TYR TYR TYR PRO THR GLY ARG PRO ALA ALA PRO GLY SEQRES 10 A 614 SER GLY SER GLU GLY HIS TYR ASP GLN ASP MET LEU GLN SEQRES 11 A 614 PHE SER THR TRP GLY PHE ASP PHE VAL LYS VAL ASP TRP SEQRES 12 A 614 CYS GLY GLY ASP ALA GLU GLY LEU ASP ALA ALA THR THR SEQRES 13 A 614 TYR LYS SER ILE SER ASP ALA VAL GLY ARG ALA ALA ALA SEQRES 14 A 614 THR THR GLY ARG PRO LEU THR LEU SER ILE CYS ASN TRP SEQRES 15 A 614 GLY TYR GLN ASN PRO TRP ASN TRP ALA ALA GLY GLN ALA SEQRES 16 A 614 PRO LEU TRP ARG THR SER THR ASP ILE ILE TYR TYR GLY SEQRES 17 A 614 ASN GLN PRO SER MET THR SER LEU LEU SER ASN PHE ASP SEQRES 18 A 614 GLN THR LEU HIS PRO THR ALA GLN HIS THR GLY TYR TYR SEQRES 19 A 614 ASN ASP PRO ASP MET LEU MET VAL GLY MET ASP GLY PHE SEQRES 20 A 614 THR ALA ALA GLN ASN ARG THR HIS MET ASN LEU TRP ALA SEQRES 21 A 614 ILE SER GLY ALA PRO LEU LEU ALA GLY ASN ASP LEU THR SEQRES 22 A 614 THR MET THR SER GLU THR ALA GLY ILE LEU LYS ASN PRO SEQRES 23 A 614 GLU VAL ILE ALA VAL ASP GLN ASP SER ARG GLY LEU GLN SEQRES 24 A 614 GLY VAL LYS VAL ALA GLU ASP THR THR GLY LEU GLN ALA SEQRES 25 A 614 TYR GLY LYS VAL LEU SER GLY THR GLY ASN ARG ALA VAL SEQRES 26 A 614 VAL LEU LEU ASN ARG THR SER ALA ALA HIS ASP ILE THR SEQRES 27 A 614 VAL ARG TRP SER ASP LEU GLY LEU THR ASN ALA SER ALA SEQRES 28 A 614 THR VAL ARG ASP LEU TRP ALA ARG GLN ASN VAL GLY THR SEQRES 29 A 614 SER ALA THR GLY TYR THR ALA SER VAL PRO ALA GLY GLY SEQRES 30 A 614 SER VAL MET LEU THR VAL THR GLY GLY THR GLU ALA ALA SEQRES 31 A 614 GLY GLY ALA TYR ALA ALA THR SER THR GLY ARG TYR THR SEQRES 32 A 614 GLY VAL THR ALA ALA SER THR GLY LEU ASN VAL VAL ASP SEQRES 33 A 614 VAL ALA TYR THR ASN ASN THR SER SER ALA ARG THR ALA SEQRES 34 A 614 THR LEU GLN VAL ASN GLY GLN THR ALA THR THR VAL SER SEQRES 35 A 614 PHE PRO PRO THR GLY ALA SER ALA GLY THR VAL SER VAL SEQRES 36 A 614 GLU VAL SER LEU SER LYS GLY SER ALA ASN THR LEU ALA SEQRES 37 A 614 LEU SER GLY GLY PRO ALA THR GLU GLY ILE THR VAL ARG SEQRES 38 A 614 PRO LEU PRO GLY THR ASN GLY ALA LEU VAL THR GLY LYS SEQRES 39 A 614 GLN SER GLY ARG CYS ALA ASP ILE TYR ASN ASN THR ILE SEQRES 40 A 614 THR ASN GLY THR GLN ALA GLU LEU TRP ASP CYS ASN GLY SEQRES 41 A 614 GLY PRO ASN GLN SER TRP THR TYR THR SER ARG LYS GLU SEQRES 42 A 614 LEU VAL LEU TYR GLY ASN LYS CYS LEU ASP ALA TYR ASN SEQRES 43 A 614 LEU GLY THR THR ASN GLY THR LYS VAL VAL ILE TRP ASP SEQRES 44 A 614 CYS ASN GLY GLN ALA ASN GLN LYS TRP ASN ILE ASN SER SEQRES 45 A 614 ASP GLY THR ILE THR ASN VAL ASN ALA GLY LEU CYS LEU SEQRES 46 A 614 ASP ALA TYR ASN ALA ALA THR ALA ASN GLY THR SER LEU SEQRES 47 A 614 VAL LEU TRP SER CYS GLY THR GLY ASP ASN GLN LYS TRP SEQRES 48 A 614 THR VAL THR SEQRES 1 B 614 ALA VAL THR THR ARG GLN ILE THR VAL PRO SER ALA PRO SEQRES 2 B 614 MET GLY TRP ALA SER TRP ASN SER PHE ALA ALA LYS ILE SEQRES 3 B 614 ASP TYR SER VAL ILE LYS LYS GLN VAL ASP ALA PHE VAL SEQRES 4 B 614 ALA ALA GLY LEU PRO ALA ALA GLY TYR THR TYR ILE ASN SEQRES 5 B 614 ILE ASP GLU GLY TRP TRP GLN GLY THR ARG ASP SER ALA SEQRES 6 B 614 GLY ASN ILE THR VAL ASP THR ALA GLU TRP PRO GLY GLY SEQRES 7 B 614 MET SER ALA ILE THR ALA TYR ILE HIS SER LYS GLY LEU SEQRES 8 B 614 LYS ALA GLY ILE TYR THR ASP ALA GLY LYS ASP GLY CYS SEQRES 9 B 614 GLY TYR TYR TYR PRO THR GLY ARG PRO ALA ALA PRO GLY SEQRES 10 B 614 SER GLY SER GLU GLY HIS TYR ASP GLN ASP MET LEU GLN SEQRES 11 B 614 PHE SER THR TRP GLY PHE ASP PHE VAL LYS VAL ASP TRP SEQRES 12 B 614 CYS GLY GLY ASP ALA GLU GLY LEU ASP ALA ALA THR THR SEQRES 13 B 614 TYR LYS SER ILE SER ASP ALA VAL GLY ARG ALA ALA ALA SEQRES 14 B 614 THR THR GLY ARG PRO LEU THR LEU SER ILE CYS ASN TRP SEQRES 15 B 614 GLY TYR GLN ASN PRO TRP ASN TRP ALA ALA GLY GLN ALA SEQRES 16 B 614 PRO LEU TRP ARG THR SER THR ASP ILE ILE TYR TYR GLY SEQRES 17 B 614 ASN GLN PRO SER MET THR SER LEU LEU SER ASN PHE ASP SEQRES 18 B 614 GLN THR LEU HIS PRO THR ALA GLN HIS THR GLY TYR TYR SEQRES 19 B 614 ASN ASP PRO ASP MET LEU MET VAL GLY MET ASP GLY PHE SEQRES 20 B 614 THR ALA ALA GLN ASN ARG THR HIS MET ASN LEU TRP ALA SEQRES 21 B 614 ILE SER GLY ALA PRO LEU LEU ALA GLY ASN ASP LEU THR SEQRES 22 B 614 THR MET THR SER GLU THR ALA GLY ILE LEU LYS ASN PRO SEQRES 23 B 614 GLU VAL ILE ALA VAL ASP GLN ASP SER ARG GLY LEU GLN SEQRES 24 B 614 GLY VAL LYS VAL ALA GLU ASP THR THR GLY LEU GLN ALA SEQRES 25 B 614 TYR GLY LYS VAL LEU SER GLY THR GLY ASN ARG ALA VAL SEQRES 26 B 614 VAL LEU LEU ASN ARG THR SER ALA ALA HIS ASP ILE THR SEQRES 27 B 614 VAL ARG TRP SER ASP LEU GLY LEU THR ASN ALA SER ALA SEQRES 28 B 614 THR VAL ARG ASP LEU TRP ALA ARG GLN ASN VAL GLY THR SEQRES 29 B 614 SER ALA THR GLY TYR THR ALA SER VAL PRO ALA GLY GLY SEQRES 30 B 614 SER VAL MET LEU THR VAL THR GLY GLY THR GLU ALA ALA SEQRES 31 B 614 GLY GLY ALA TYR ALA ALA THR SER THR GLY ARG TYR THR SEQRES 32 B 614 GLY VAL THR ALA ALA SER THR GLY LEU ASN VAL VAL ASP SEQRES 33 B 614 VAL ALA TYR THR ASN ASN THR SER SER ALA ARG THR ALA SEQRES 34 B 614 THR LEU GLN VAL ASN GLY GLN THR ALA THR THR VAL SER SEQRES 35 B 614 PHE PRO PRO THR GLY ALA SER ALA GLY THR VAL SER VAL SEQRES 36 B 614 GLU VAL SER LEU SER LYS GLY SER ALA ASN THR LEU ALA SEQRES 37 B 614 LEU SER GLY GLY PRO ALA THR GLU GLY ILE THR VAL ARG SEQRES 38 B 614 PRO LEU PRO GLY THR ASN GLY ALA LEU VAL THR GLY LYS SEQRES 39 B 614 GLN SER GLY ARG CYS ALA ASP ILE TYR ASN ASN THR ILE SEQRES 40 B 614 THR ASN GLY THR GLN ALA GLU LEU TRP ASP CYS ASN GLY SEQRES 41 B 614 GLY PRO ASN GLN SER TRP THR TYR THR SER ARG LYS GLU SEQRES 42 B 614 LEU VAL LEU TYR GLY ASN LYS CYS LEU ASP ALA TYR ASN SEQRES 43 B 614 LEU GLY THR THR ASN GLY THR LYS VAL VAL ILE TRP ASP SEQRES 44 B 614 CYS ASN GLY GLN ALA ASN GLN LYS TRP ASN ILE ASN SER SEQRES 45 B 614 ASP GLY THR ILE THR ASN VAL ASN ALA GLY LEU CYS LEU SEQRES 46 B 614 ASP ALA TYR ASN ALA ALA THR ALA ASN GLY THR SER LEU SEQRES 47 B 614 VAL LEU TRP SER CYS GLY THR GLY ASP ASN GLN LYS TRP SEQRES 48 B 614 THR VAL THR HET GAL A 801 12 HET GOL A 901 6 HET GOL A 902 6 HET GOL A 903 6 HET GOL A 911 6 HET GOL A 912 6 HET GOL A 914 6 HET GOL A 915 6 HET GOL A 917 6 HET GOL A 919 6 HET GOL A 921 6 HET GOL A 925 6 HET GOL A 927 6 HET 1PG A 962 16 HET SO4 A 971 5 HET SO4 A 974 5 HET SO4 A 975 5 HET GAL B 851 12 HET GAL B 881 12 HET GOL B 904 6 HET GOL B 905 6 HET GOL B 913 6 HET GOL B 918 6 HET GOL B 920 6 HET GOL B 924 6 HET GOL B 934 6 HET EPE B 951 15 HET 1PG B 963 16 HET SO4 B 972 5 HET SO4 B 973 5 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM GOL GLYCEROL HETNAM 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)- HETNAM 2 1PG ETHANOL HETNAM SO4 SULFATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES FORMUL 3 GAL 3(C6 H12 O6) FORMUL 4 GOL 19(C3 H8 O3) FORMUL 16 1PG 2(C11 H24 O6) FORMUL 17 SO4 5(O4 S 2-) FORMUL 29 EPE C8 H18 N2 O4 S FORMUL 33 HOH *1487(H2 O) HELIX 1 1 SER A 62 ALA A 67 1 6 HELIX 2 2 ASP A 71 ALA A 85 1 15 HELIX 3 3 LEU A 87 GLY A 91 5 5 HELIX 4 4 GLY A 122 LYS A 133 1 12 HELIX 5 5 GLY A 147 TYR A 152 1 6 HELIX 6 6 HIS A 167 GLY A 179 1 13 HELIX 7 7 TRP A 187 GLY A 194 1 8 HELIX 8 8 ASP A 196 GLY A 216 1 21 HELIX 9 9 ASN A 230 TRP A 234 5 5 HELIX 10 10 SER A 256 LEU A 268 1 13 HELIX 11 11 THR A 292 GLY A 307 1 16 HELIX 12 12 ASP A 315 MET A 319 5 5 HELIX 13 13 THR A 320 LYS A 328 1 9 HELIX 14 14 ASN A 329 GLN A 337 1 9 HELIX 15 15 PRO A 528 ASN A 531 5 4 HELIX 16 16 ILE A 546 THR A 550 5 5 HELIX 17 17 GLY A 565 SER A 569 5 5 HELIX 18 18 ASN A 590 GLY A 592 5 3 HELIX 19 19 GLN A 607 GLN A 610 5 4 HELIX 20 20 ASN A 633 ALA A 635 5 3 HELIX 21 21 GLY A 650 GLN A 653 5 4 HELIX 22 22 SER B 62 ALA B 67 1 6 HELIX 23 23 ASP B 71 ALA B 85 1 15 HELIX 24 24 LEU B 87 GLY B 91 5 5 HELIX 25 25 GLY B 122 LYS B 133 1 12 HELIX 26 26 GLY B 147 TYR B 152 1 6 HELIX 27 27 HIS B 167 GLY B 179 1 13 HELIX 28 28 TRP B 187 GLY B 194 1 8 HELIX 29 29 ASP B 196 GLY B 216 1 21 HELIX 30 30 ASN B 230 TRP B 234 5 5 HELIX 31 31 SER B 256 LEU B 268 1 13 HELIX 32 32 THR B 292 GLY B 307 1 16 HELIX 33 33 ASP B 315 MET B 319 5 5 HELIX 34 34 THR B 320 ASN B 329 1 10 HELIX 35 35 ASN B 329 GLN B 337 1 9 HELIX 36 36 SER B 386 GLY B 389 5 4 HELIX 37 37 PRO B 528 ASN B 531 5 4 HELIX 38 38 ILE B 546 THR B 550 5 5 HELIX 39 39 GLY B 565 SER B 569 5 5 HELIX 40 40 ASN B 590 GLY B 592 5 3 HELIX 41 41 GLN B 607 GLN B 610 5 4 HELIX 42 42 ASN B 633 ALA B 635 5 3 HELIX 43 43 GLY B 650 GLN B 653 5 4 SHEET 1 A 5 ARG A 49 GLN A 50 0 SHEET 2 A 5 GLY A 495 LEU A 503 1 O THR A 496 N ARG A 49 SHEET 3 A 5 GLY A 455 TYR A 463 -1 N VAL A 461 O VAL A 497 SHEET 4 A 5 THR A 519 PRO A 526 -1 O ARG A 525 N VAL A 458 SHEET 5 A 5 GLY A 436 TYR A 438 -1 N GLY A 436 O VAL A 524 SHEET 1 B 8 TYR A 278 ASP A 280 0 SHEET 2 B 8 LEU A 241 ARG A 243 1 N TRP A 242 O ASP A 280 SHEET 3 B 8 THR A 220 ILE A 223 1 N ILE A 223 O LEU A 241 SHEET 4 B 8 PHE A 182 ASP A 186 1 N VAL A 183 O SER A 222 SHEET 5 B 8 LYS A 136 ASP A 142 1 N THR A 141 O ASP A 186 SHEET 6 B 8 TYR A 94 ASN A 96 1 N ILE A 95 O GLY A 138 SHEET 7 B 8 MET A 58 ALA A 61 1 N TRP A 60 O ASN A 96 SHEET 8 B 8 LEU A 310 ALA A 312 1 O ALA A 312 N GLY A 59 SHEET 1 C 6 VAL A 345 THR A 351 0 SHEET 2 C 6 LEU A 354 VAL A 360 -1 O ALA A 356 N VAL A 347 SHEET 3 C 6 ARG A 367 ASN A 373 -1 O VAL A 370 N TYR A 357 SHEET 4 C 6 SER A 422 THR A 428 -1 O LEU A 425 N VAL A 369 SHEET 5 C 6 ALA A 395 ASP A 399 -1 N THR A 396 O THR A 428 SHEET 6 C 6 GLN A 404 SER A 409 -1 O VAL A 406 N VAL A 397 SHEET 1 D 2 HIS A 379 ARG A 384 0 SHEET 2 D 2 GLY A 412 VAL A 417 -1 O TYR A 413 N VAL A 383 SHEET 1 E 4 ARG A 445 ALA A 451 0 SHEET 2 E 4 GLY A 506 SER A 514 -1 O LEU A 511 N TYR A 446 SHEET 3 E 4 ARG A 471 VAL A 477 -1 N THR A 474 O SER A 514 SHEET 4 E 4 THR A 483 PHE A 487 -1 O PHE A 487 N ARG A 471 SHEET 1 F 2 THR A 536 GLY A 537 0 SHEET 2 F 2 TRP A 655 THR A 656 -1 O THR A 656 N THR A 536 SHEET 1 G 2 CYS A 543 ASP A 545 0 SHEET 2 G 2 GLU A 558 TRP A 560 -1 O TRP A 560 N CYS A 543 SHEET 1 H 4 THR A 571 TYR A 572 0 SHEET 2 H 4 LEU A 578 LEU A 580 -1 O VAL A 579 N THR A 571 SHEET 3 H 4 LYS A 584 ALA A 588 -1 O LYS A 584 N LEU A 580 SHEET 4 H 4 VAL A 599 ASP A 603 -1 O TRP A 602 N CYS A 585 SHEET 1 I 2 TRP A 612 ILE A 614 0 SHEET 2 I 2 ILE A 620 ASN A 622 -1 O THR A 621 N ASN A 613 SHEET 1 J 2 CYS A 628 ALA A 631 0 SHEET 2 J 2 LEU A 642 TRP A 645 -1 O TRP A 645 N CYS A 628 SHEET 1 K 8 TYR B 278 ASP B 280 0 SHEET 2 K 8 LEU B 241 ARG B 243 1 N TRP B 242 O ASP B 280 SHEET 3 K 8 THR B 220 ILE B 223 1 N ILE B 223 O LEU B 241 SHEET 4 K 8 PHE B 182 ASP B 186 1 N VAL B 183 O SER B 222 SHEET 5 K 8 LYS B 136 ASP B 142 1 N THR B 141 O ASP B 186 SHEET 6 K 8 TYR B 94 ASN B 96 1 N ILE B 95 O GLY B 138 SHEET 7 K 8 MET B 58 ALA B 61 1 N TRP B 60 O ASN B 96 SHEET 8 K 8 LEU B 310 ALA B 312 1 O ALA B 312 N GLY B 59 SHEET 1 L 6 VAL B 345 THR B 351 0 SHEET 2 L 6 LEU B 354 VAL B 360 -1 O ALA B 356 N VAL B 347 SHEET 3 L 6 ARG B 367 ASN B 373 -1 O LEU B 372 N GLN B 355 SHEET 4 L 6 SER B 422 THR B 428 -1 O LEU B 425 N VAL B 369 SHEET 5 L 6 ALA B 395 ASP B 399 -1 N THR B 396 O THR B 428 SHEET 6 L 6 GLN B 404 SER B 409 -1 O GLY B 407 N VAL B 397 SHEET 1 M 2 HIS B 379 ARG B 384 0 SHEET 2 M 2 GLY B 412 VAL B 417 -1 O VAL B 417 N HIS B 379 SHEET 1 N 4 GLY B 436 TYR B 438 0 SHEET 2 N 4 THR B 519 PRO B 526 -1 O VAL B 524 N GLY B 436 SHEET 3 N 4 GLY B 455 TYR B 463 -1 N VAL B 458 O ARG B 525 SHEET 4 N 4 GLY B 495 LEU B 503 -1 O VAL B 497 N VAL B 461 SHEET 1 O 4 ARG B 445 ALA B 451 0 SHEET 2 O 4 GLY B 506 SER B 514 -1 O LEU B 511 N TYR B 446 SHEET 3 O 4 ARG B 471 VAL B 477 -1 N THR B 474 O SER B 514 SHEET 4 O 4 THR B 483 PHE B 487 -1 O THR B 483 N LEU B 475 SHEET 1 P 2 VAL B 535 GLY B 537 0 SHEET 2 P 2 TRP B 655 VAL B 657 -1 O THR B 656 N THR B 536 SHEET 1 Q 2 CYS B 543 ASP B 545 0 SHEET 2 Q 2 GLU B 558 TRP B 560 -1 O TRP B 560 N CYS B 543 SHEET 1 R 4 THR B 571 TYR B 572 0 SHEET 2 R 4 LEU B 578 LEU B 580 -1 O VAL B 579 N THR B 571 SHEET 3 R 4 LYS B 584 ALA B 588 -1 O LYS B 584 N LEU B 580 SHEET 4 R 4 VAL B 599 ASP B 603 -1 O TRP B 602 N CYS B 585 SHEET 1 S 2 TRP B 612 ILE B 614 0 SHEET 2 S 2 ILE B 620 ASN B 622 -1 O THR B 621 N ASN B 613 SHEET 1 T 2 CYS B 628 ALA B 631 0 SHEET 2 T 2 LEU B 642 TRP B 645 -1 O TRP B 645 N CYS B 628 SSBOND 1 CYS A 148 CYS A 188 1555 1555 2.03 SSBOND 2 CYS A 543 CYS A 562 1555 1555 2.04 SSBOND 3 CYS A 585 CYS A 604 1555 1555 2.05 SSBOND 4 CYS A 628 CYS A 647 1555 1555 2.03 SSBOND 5 CYS B 148 CYS B 188 1555 1555 2.04 SSBOND 6 CYS B 543 CYS B 562 1555 1555 2.04 SSBOND 7 CYS B 585 CYS B 604 1555 1555 2.05 SSBOND 8 CYS B 628 CYS B 647 1555 1555 2.04 CRYST1 68.256 99.081 181.630 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014651 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005506 0.00000