HEADER LIGASE 07-JUL-09 3A4I TITLE CRYSTAL STRUCTURE OF GMP SYNTHETASE PH1347 FROM PYROCOCCUS HORIKOSHII TITLE 2 OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GMP SYNTHASE [GLUTAMINE-HYDROLYZING] SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATPPASE SUBUNIT, GMP SYNTHETASE; COMPND 5 EC: 6.3.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: GUAAB, PH1347; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ATP PYROPHOSPHATASE, GLUTAMINE AMIDOTRANSFERASE, GMP SYNTHETASE, KEYWDS 2 PURINE NUCLEOTIDE BIOSYNTHESIS, ATP-BINDING, GMP BIOSYNTHESIS, KEYWDS 3 LIGASE, NUCLEOTIDE-BINDING, PURINE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.MARUOKA,S.HORITA,W.C.LEE,K.NAGATA,M.TANOKURA REVDAT 4 13-MAR-24 3A4I 1 REMARK REVDAT 3 13-JUL-11 3A4I 1 VERSN REVDAT 2 16-FEB-10 3A4I 1 JRNL REVDAT 1 21-JUL-09 3A4I 0 SPRSDE 21-JUL-09 3A4I 2Z0C JRNL AUTH S.MARUOKA,S.HORITA,W.C.LEE,K.NAGATA,M.TANOKURA JRNL TITL CRYSTAL STRUCTURE OF THE ATPPASE SUBUNIT AND ITS JRNL TITL 2 SUBSTRATE-DEPENDENT ASSOCIATION WITH THE GATASE SUBUNIT: A JRNL TITL 3 NOVEL REGULATORY MECHANISM FOR A TWO-SUBUNIT-TYPE GMP JRNL TITL 4 SYNTHETASE FROM PYROCOCCUS HORIKOSHII OT3. JRNL REF J.MOL.BIOL. V. 395 417 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19900465 JRNL DOI 10.1016/J.JMB.2009.10.053 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 57488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3071 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4133 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : -0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4612 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6234 ; 1.361 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 568 ; 5.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;29.902 ;23.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 826 ;13.657 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;20.078 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 706 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3462 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2151 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3191 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 285 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2955 ; 0.991 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4606 ; 1.463 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1885 ; 2.562 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1628 ; 4.149 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8038 26.6475 -2.0078 REMARK 3 T TENSOR REMARK 3 T11: -0.0250 T22: -0.0145 REMARK 3 T33: 0.0035 T12: 0.0032 REMARK 3 T13: 0.0023 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.1353 L22: 0.0330 REMARK 3 L33: 0.3786 L12: -0.0664 REMARK 3 L13: 0.0712 L23: -0.0240 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.0177 S13: -0.0133 REMARK 3 S21: -0.0039 S22: 0.0241 S23: -0.0037 REMARK 3 S31: -0.0208 S32: 0.0001 S33: -0.0092 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 308 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3634 23.0006 -47.7737 REMARK 3 T TENSOR REMARK 3 T11: -0.0032 T22: -0.0121 REMARK 3 T33: -0.0177 T12: 0.0028 REMARK 3 T13: -0.0059 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.1132 L22: 0.0149 REMARK 3 L33: 0.6166 L12: 0.0363 REMARK 3 L13: 0.0656 L23: 0.0645 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.0338 S13: -0.0226 REMARK 3 S21: -0.0081 S22: -0.0054 S23: 0.0212 REMARK 3 S31: -0.0403 S32: 0.0018 S33: 0.0196 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000028800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.07600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30%(V/V) PEG400, 100MM TRIS-HCL(PH REMARK 280 8.4), 200MM MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 278K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.95150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.78250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.10600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.78250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.95150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.10600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 132 REMARK 465 TRP A 133 REMARK 465 ILE A 134 REMARK 465 GLU A 135 REMARK 465 SER A 136 REMARK 465 GLN A 137 REMARK 465 GLY A 138 REMARK 465 LYS A 139 REMARK 465 ILE A 140 REMARK 465 LYS A 141 REMARK 465 SER A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 ASN A 145 REMARK 465 VAL A 146 REMARK 465 GLY A 147 REMARK 465 GLY A 148 REMARK 465 LEU A 149 REMARK 465 PRO A 150 REMARK 465 GLU A 151 REMARK 465 LYS A 152 REMARK 465 LEU A 153 REMARK 465 ASP B 132 REMARK 465 TRP B 133 REMARK 465 ILE B 134 REMARK 465 GLU B 135 REMARK 465 SER B 136 REMARK 465 GLN B 137 REMARK 465 GLY B 138 REMARK 465 LYS B 139 REMARK 465 ILE B 140 REMARK 465 LYS B 141 REMARK 465 SER B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 ASN B 145 REMARK 465 VAL B 146 REMARK 465 GLY B 147 REMARK 465 GLY B 148 REMARK 465 LEU B 149 REMARK 465 PRO B 150 REMARK 465 GLU B 151 REMARK 465 LYS B 152 REMARK 465 LEU B 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 154 CG OD1 ND2 REMARK 470 ASN B 154 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 292 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 292 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 262 17.82 -150.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 3A4I A 1 308 UNP O59072 GUAAB_PYRHO 1 308 DBREF 3A4I B 1 308 UNP O59072 GUAAB_PYRHO 1 308 SEQRES 1 A 308 MET ASP TRP GLY ARG PHE VAL GLU GLU LYS VAL ARG GLU SEQRES 2 A 308 ILE ARG GLU THR VAL GLY ASP SER LYS ALA ILE ILE ALA SEQRES 3 A 308 LEU SER GLY GLY VAL ASP SER SER THR ALA ALA VAL LEU SEQRES 4 A 308 ALA HIS LYS ALA ILE GLY ASP ARG LEU HIS ALA VAL PHE SEQRES 5 A 308 VAL ASN THR GLY PHE LEU ARG LYS GLY GLU PRO GLU PHE SEQRES 6 A 308 VAL VAL LYS THR PHE ARG ASP GLU PHE GLY MET ASN LEU SEQRES 7 A 308 HIS TYR VAL ASP ALA GLN ASP ARG PHE PHE SER ALA LEU SEQRES 8 A 308 LYS GLY VAL THR ASP PRO GLU GLU LYS ARG LYS ILE ILE SEQRES 9 A 308 GLY ARG VAL PHE ILE GLU VAL PHE GLU GLU VAL ALA LYS SEQRES 10 A 308 LYS ILE GLY ALA GLU TYR LEU ILE GLN GLY THR ILE ALA SEQRES 11 A 308 PRO ASP TRP ILE GLU SER GLN GLY LYS ILE LYS SER HIS SEQRES 12 A 308 HIS ASN VAL GLY GLY LEU PRO GLU LYS LEU ASN LEU LYS SEQRES 13 A 308 LEU ILE GLU PRO LEU ARG ASP LEU TYR LYS ASP GLU VAL SEQRES 14 A 308 ARG GLU LEU ALA LYS PHE LEU GLY LEU PRO GLU LYS ILE SEQRES 15 A 308 TYR ASN ARG MET PRO PHE PRO GLY PRO GLY LEU ALA VAL SEQRES 16 A 308 ARG VAL ILE GLY GLU VAL THR PRO GLU LYS ILE ARG ILE SEQRES 17 A 308 VAL ARG GLU ALA ASN ALA ILE VAL GLU GLU GLU VAL GLU SEQRES 18 A 308 ARG ALA GLY LEU ARG PRO TRP GLN ALA PHE ALA VAL LEU SEQRES 19 A 308 LEU GLY VAL LYS THR VAL GLY VAL GLN GLY ASP ILE ARG SEQRES 20 A 308 ALA TYR LYS GLU THR ILE ALA VAL ARG ILE VAL GLU SER SEQRES 21 A 308 ILE ASP GLY MET THR ALA ASN ALA MET ASN VAL PRO TRP SEQRES 22 A 308 GLU VAL LEU GLN ARG ILE ALA PHE ARG ILE THR SER GLU SEQRES 23 A 308 ILE PRO GLU VAL GLY ARG VAL LEU TYR ASP ILE THR ASN SEQRES 24 A 308 LYS PRO PRO ALA THR ILE GLU PHE GLU SEQRES 1 B 308 MET ASP TRP GLY ARG PHE VAL GLU GLU LYS VAL ARG GLU SEQRES 2 B 308 ILE ARG GLU THR VAL GLY ASP SER LYS ALA ILE ILE ALA SEQRES 3 B 308 LEU SER GLY GLY VAL ASP SER SER THR ALA ALA VAL LEU SEQRES 4 B 308 ALA HIS LYS ALA ILE GLY ASP ARG LEU HIS ALA VAL PHE SEQRES 5 B 308 VAL ASN THR GLY PHE LEU ARG LYS GLY GLU PRO GLU PHE SEQRES 6 B 308 VAL VAL LYS THR PHE ARG ASP GLU PHE GLY MET ASN LEU SEQRES 7 B 308 HIS TYR VAL ASP ALA GLN ASP ARG PHE PHE SER ALA LEU SEQRES 8 B 308 LYS GLY VAL THR ASP PRO GLU GLU LYS ARG LYS ILE ILE SEQRES 9 B 308 GLY ARG VAL PHE ILE GLU VAL PHE GLU GLU VAL ALA LYS SEQRES 10 B 308 LYS ILE GLY ALA GLU TYR LEU ILE GLN GLY THR ILE ALA SEQRES 11 B 308 PRO ASP TRP ILE GLU SER GLN GLY LYS ILE LYS SER HIS SEQRES 12 B 308 HIS ASN VAL GLY GLY LEU PRO GLU LYS LEU ASN LEU LYS SEQRES 13 B 308 LEU ILE GLU PRO LEU ARG ASP LEU TYR LYS ASP GLU VAL SEQRES 14 B 308 ARG GLU LEU ALA LYS PHE LEU GLY LEU PRO GLU LYS ILE SEQRES 15 B 308 TYR ASN ARG MET PRO PHE PRO GLY PRO GLY LEU ALA VAL SEQRES 16 B 308 ARG VAL ILE GLY GLU VAL THR PRO GLU LYS ILE ARG ILE SEQRES 17 B 308 VAL ARG GLU ALA ASN ALA ILE VAL GLU GLU GLU VAL GLU SEQRES 18 B 308 ARG ALA GLY LEU ARG PRO TRP GLN ALA PHE ALA VAL LEU SEQRES 19 B 308 LEU GLY VAL LYS THR VAL GLY VAL GLN GLY ASP ILE ARG SEQRES 20 B 308 ALA TYR LYS GLU THR ILE ALA VAL ARG ILE VAL GLU SER SEQRES 21 B 308 ILE ASP GLY MET THR ALA ASN ALA MET ASN VAL PRO TRP SEQRES 22 B 308 GLU VAL LEU GLN ARG ILE ALA PHE ARG ILE THR SER GLU SEQRES 23 B 308 ILE PRO GLU VAL GLY ARG VAL LEU TYR ASP ILE THR ASN SEQRES 24 B 308 LYS PRO PRO ALA THR ILE GLU PHE GLU FORMUL 3 HOH *276(H2 O) HELIX 1 1 ASP A 2 GLY A 19 1 18 HELIX 2 2 GLY A 30 GLY A 45 1 16 HELIX 3 3 GLY A 61 ARG A 71 1 11 HELIX 4 4 ALA A 83 LEU A 91 1 9 HELIX 5 5 ASP A 96 GLY A 120 1 25 HELIX 6 6 TYR A 165 LEU A 176 1 12 HELIX 7 7 PRO A 179 ASN A 184 1 6 HELIX 8 8 PRO A 191 VAL A 197 5 7 HELIX 9 9 THR A 202 ALA A 223 1 22 HELIX 10 10 PRO A 272 ILE A 287 1 16 HELIX 11 11 ASP B 2 GLY B 19 1 18 HELIX 12 12 GLY B 30 GLY B 45 1 16 HELIX 13 13 GLY B 61 ARG B 71 1 11 HELIX 14 14 ALA B 83 LYS B 92 1 10 HELIX 15 15 ASP B 96 GLY B 120 1 25 HELIX 16 16 TYR B 165 LEU B 176 1 12 HELIX 17 17 PRO B 179 ASN B 184 1 6 HELIX 18 18 PRO B 191 VAL B 197 5 7 HELIX 19 19 THR B 202 ALA B 223 1 22 HELIX 20 20 PRO B 272 ILE B 287 1 16 SHEET 1 A 5 ASN A 77 ASP A 82 0 SHEET 2 A 5 LEU A 48 ASN A 54 1 N ALA A 50 O HIS A 79 SHEET 3 A 5 ALA A 23 LEU A 27 1 N ILE A 25 O VAL A 51 SHEET 4 A 5 TYR A 123 ILE A 125 1 O ILE A 125 N ILE A 24 SHEET 5 A 5 LYS A 156 ILE A 158 1 O ILE A 158 N LEU A 124 SHEET 1 B 3 GLN A 229 LEU A 234 0 SHEET 2 B 3 ILE A 246 GLU A 259 -1 O ARG A 256 N PHE A 231 SHEET 3 B 3 ASN A 267 ALA A 268 -1 O ASN A 267 N GLU A 259 SHEET 1 C 6 THR A 239 GLN A 243 0 SHEET 2 C 6 ILE A 246 GLU A 259 -1 O ALA A 248 N GLY A 241 SHEET 3 C 6 VAL A 290 ASP A 296 1 O LEU A 294 N VAL A 255 SHEET 4 C 6 VAL B 290 ASP B 296 -1 O TYR B 295 N TYR A 295 SHEET 5 C 6 GLU B 251 SER B 260 1 N VAL B 255 O ASP B 296 SHEET 6 C 6 ALA B 266 ALA B 268 -1 O ASN B 267 N GLU B 259 SHEET 1 D 3 ALA B 266 ALA B 268 0 SHEET 2 D 3 GLU B 251 SER B 260 -1 N GLU B 259 O ASN B 267 SHEET 3 D 3 GLN B 229 LEU B 234 -1 N PHE B 231 O ARG B 256 SHEET 1 E 5 ASN B 77 ASP B 82 0 SHEET 2 E 5 LEU B 48 ASN B 54 1 N ALA B 50 O HIS B 79 SHEET 3 E 5 ALA B 23 ALA B 26 1 N ILE B 25 O VAL B 51 SHEET 4 E 5 TYR B 123 ILE B 125 1 O ILE B 125 N ILE B 24 SHEET 5 E 5 LYS B 156 ILE B 158 1 O LYS B 156 N LEU B 124 CISPEP 1 ALA A 130 PRO A 131 0 -0.43 CISPEP 2 LYS A 300 PRO A 301 0 -9.03 CISPEP 3 PRO A 301 PRO A 302 0 6.52 CISPEP 4 ALA B 130 PRO B 131 0 4.40 CISPEP 5 LYS B 300 PRO B 301 0 -4.60 CISPEP 6 PRO B 301 PRO B 302 0 6.52 CRYST1 69.903 82.212 111.565 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014306 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012164 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008963 0.00000