HEADER HYDROLASE/DNA 09-JUL-09 3A4K TITLE CRYSTAL STRUCTURAL ANALYSIS OF HINDIII RESTRICTION ENDONUCLEASE IN TITLE 2 COMPLEX WITH COGNATE DNA AND DIVALENT CATIONS AT 2.17 ANGSTROM TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE-2 RESTRICTION ENZYME HINDIII; COMPND 3 CHAIN: A, C, B, D; COMPND 4 SYNONYM: HINDIIIR, R.HINDIII, TYPE II RESTRICTION ENZYME HINDIII, COMPND 5 ENDONUCLEASE HINDIII; COMPND 6 EC: 3.1.21.4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*GP*CP*CP*A)-3'); COMPND 10 CHAIN: E, G, I, K; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: 5'-FRAGMENT OF CLEAVED COGNATE DNA WITH HINDIIIR; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3'); COMPND 15 CHAIN: F, H, J, L; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: 3'-FRAGMENT OF CLEAVED COGNATE DNA WITH HINDIIIR; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'); COMPND 20 CHAIN: M, N; COMPND 21 ENGINEERED: YES; COMPND 22 OTHER_DETAILS: COGNATE DNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: RD KW20; SOURCE 5 GENE: HINDIIIR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: THIS DNA SEQUENCE SYNTHESIZED CHEMICALLY CONTAINS SOURCE 18 COGNATE HINDIIIR RECOGNITION SEQUENCE AND ELONGATED SCAFFOLDS ON SOURCE 19 BOTH SIDES KEYWDS TYPE II RESTRICTION ENZYME HINDIII(E.C.3.1.21.4)/DNA, HYDROLASE-DNA KEYWDS 2 COMPLEX, ENDONUCLEASE, HYDROLASE, NUCLEASE, RESTRICTION SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.WATANABE,C.SATO,Y.TAKASAKI,I.TANAKA REVDAT 5 01-NOV-23 3A4K 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 3A4K 1 REMARK REVDAT 3 05-MAR-14 3A4K 1 JRNL REVDAT 2 13-JUL-11 3A4K 1 VERSN REVDAT 1 20-OCT-09 3A4K 0 JRNL AUTH N.WATANABE,Y.TAKASAKI,C.SATO,S.ANDO,I.TANAKA JRNL TITL STRUCTURES OF RESTRICTION ENDONUCLEASE HINDIII IN COMPLEX JRNL TITL 2 WITH ITS COGNATE DNA AND DIVALENT CATIONS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 1326 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19966419 JRNL DOI 10.1107/S0907444909041134 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0062 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 100399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5018 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 374 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9775 REMARK 3 NUCLEIC ACID ATOMS : 1462 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 573 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11594 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 15887 ; 1.779 ; 2.133 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1182 ; 6.215 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 485 ;41.522 ;25.753 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1991 ;16.570 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;15.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1783 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8057 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5954 ; 0.969 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9619 ; 1.829 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5640 ; 2.804 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6268 ; 4.287 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3A4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000028802. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100664 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2E52 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, AMMONIUM ACETATE, MAGNESIUM REMARK 280 ION, GLYCEROL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 66.10550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 LYS A 1 REMARK 465 ARG A 88 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 LYS C 1 REMARK 465 ARG C 88 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 ARG B 88 REMARK 465 HIS D -1 REMARK 465 MET D 0 REMARK 465 LYS D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 181 CD GLU A 181 OE2 0.082 REMARK 500 GLU B 282 CG GLU B 282 CD 0.094 REMARK 500 DA F 1 P DA F 1 OP3 -0.124 REMARK 500 DG F 2 O3' DG F 2 C3' -0.055 REMARK 500 DT F 4 C6 DT F 4 N1 0.047 REMARK 500 DA H 1 P DA H 1 OP3 -0.119 REMARK 500 DA H 1 O3' DA H 1 C3' -0.040 REMARK 500 DA J 1 P DA J 1 OP3 -0.141 REMARK 500 DC K 3 O3' DC K 3 C3' -0.049 REMARK 500 DA L 1 P DA L 1 OP3 -0.153 REMARK 500 DG L 6 O3' DG L 6 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 116 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG C 116 NE - CZ - NH1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG C 116 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG D 88 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG D 88 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 DC E 2 O4' - C1' - N1 ANGL. DEV. = -6.1 DEGREES REMARK 500 DA E 4 O4' - C1' - N9 ANGL. DEV. = -8.1 DEGREES REMARK 500 DA F 1 O4' - C4' - C3' ANGL. DEV. = -5.7 DEGREES REMARK 500 DG F 2 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG F 2 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG F 2 C2 - N3 - C4 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG F 2 N7 - C8 - N9 ANGL. DEV. = -3.4 DEGREES REMARK 500 DC F 3 O4' - C4' - C3' ANGL. DEV. = -6.4 DEGREES REMARK 500 DT F 5 O4' - C1' - N1 ANGL. DEV. = -8.2 DEGREES REMARK 500 DG F 6 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DA G 4 O4' - C1' - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 DA H 1 O4' - C4' - C3' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA H 1 C3' - C2' - C1' ANGL. DEV. = -9.0 DEGREES REMARK 500 DG H 2 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC H 3 O4' - C4' - C3' ANGL. DEV. = -4.7 DEGREES REMARK 500 DC H 3 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT H 5 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT H 5 O4' - C1' - N1 ANGL. DEV. = -7.1 DEGREES REMARK 500 DT H 5 C4 - C5 - C7 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT H 5 C6 - C5 - C7 ANGL. DEV. = -5.7 DEGREES REMARK 500 DG H 6 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA I 4 O4' - C1' - N9 ANGL. DEV. = -5.6 DEGREES REMARK 500 DA J 1 O4' - C4' - C3' ANGL. DEV. = -4.3 DEGREES REMARK 500 DA J 1 C3' - C2' - C1' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG J 2 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC J 3 C5 - C4 - N4 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT J 5 O4' - C1' - N1 ANGL. DEV. = -6.5 DEGREES REMARK 500 DT J 5 N3 - C4 - O4 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG J 6 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG J 6 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG J 6 C5 - C6 - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC J 8 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC J 8 C4 - C5 - C6 ANGL. DEV. = -4.0 DEGREES REMARK 500 DC K 2 N3 - C4 - N4 ANGL. DEV. = -7.0 DEGREES REMARK 500 DC K 2 C5 - C4 - N4 ANGL. DEV. = 5.3 DEGREES REMARK 500 DC K 3 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA K 4 O4' - C1' - N9 ANGL. DEV. = -10.8 DEGREES REMARK 500 DA L 1 O4' - C4' - C3' ANGL. DEV. = -4.1 DEGREES REMARK 500 DA L 1 N1 - C2 - N3 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG L 2 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DC L 3 O4' - C4' - C3' ANGL. DEV. = -4.7 DEGREES REMARK 500 DT L 4 O4' - C1' - N1 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT L 5 O4' - C1' - N1 ANGL. DEV. = -9.2 DEGREES REMARK 500 DG L 6 C3' - C2' - C1' ANGL. DEV. = -6.4 DEGREES REMARK 500 DG L 6 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 81 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 -2.59 80.09 REMARK 500 ASN A 79 36.89 74.36 REMARK 500 PHE A 101 -162.99 -125.11 REMARK 500 THR A 117 -103.64 -86.61 REMARK 500 GLU A 134 -116.85 55.49 REMARK 500 THR A 151 -57.27 -124.02 REMARK 500 SER C 56 -5.62 67.72 REMARK 500 ASN C 79 41.50 73.10 REMARK 500 PHE C 101 -158.90 -120.09 REMARK 500 THR C 117 -101.33 -92.62 REMARK 500 GLU C 134 -111.76 53.40 REMARK 500 THR C 151 -54.76 -125.45 REMARK 500 SER C 153 145.57 -179.39 REMARK 500 ASN C 261 48.32 -103.85 REMARK 500 LEU B 34 134.06 -38.82 REMARK 500 ASN B 79 37.10 78.58 REMARK 500 PHE B 101 -161.28 -125.14 REMARK 500 THR B 117 -106.40 -83.19 REMARK 500 GLU B 134 -119.54 54.75 REMARK 500 THR B 151 -53.58 -122.89 REMARK 500 ASN D 79 40.63 73.02 REMARK 500 ARG D 88 -87.57 -100.17 REMARK 500 PHE D 101 -168.76 -120.48 REMARK 500 THR D 117 -103.19 -82.84 REMARK 500 GLU D 134 -121.57 59.35 REMARK 500 THR D 151 -55.58 -129.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 MG ION WAS USED IN THE EXPERIMENT, BUT METAL IONS AT SITES O, P, Q REMARK 600 AND R IN THE STRUCTURE HAVE BEEN DEDUCED AS MN ION USING REFINED REMARK 600 TEMPERATURE FACTORS. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 HOH A 320 O 97.1 REMARK 620 3 HOH A 386 O 90.8 164.3 REMARK 620 4 DA E 4 O3' 168.4 89.7 80.5 REMARK 620 5 HOH E 258 O 93.3 82.9 83.1 78.2 REMARK 620 6 DA F 1 OP2 102.1 85.7 106.0 87.7 161.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 ASP A 108 OD2 85.3 REMARK 620 3 ALA A 109 O 114.7 88.9 REMARK 620 4 HOH A 570 O 89.6 168.2 83.6 REMARK 620 5 DA F 1 OP3 143.5 89.4 101.3 100.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 93 OD1 REMARK 620 2 HOH C 421 O 75.7 REMARK 620 3 DA G 4 O3' 162.1 86.5 REMARK 620 4 DA H 1 OP3 96.7 102.1 87.8 REMARK 620 5 HOH H 84 O 102.1 177.7 95.7 78.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 93 OD2 REMARK 620 2 ASP C 108 OD2 84.3 REMARK 620 3 ALA C 109 O 107.8 85.2 REMARK 620 4 HOH C 573 O 88.1 163.5 83.1 REMARK 620 5 DA H 1 OP1 158.3 92.7 93.3 99.6 REMARK 620 6 DA H 1 OP3 101.2 95.5 151.0 100.4 57.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 93 OD1 REMARK 620 2 HOH B 333 O 95.2 REMARK 620 3 HOH B 342 O 78.1 173.1 REMARK 620 4 HOH B 378 O 88.7 92.0 89.2 REMARK 620 5 DA I 4 O3' 154.8 109.4 77.5 85.1 REMARK 620 6 DA J 1 OP2 94.7 82.9 96.2 174.1 93.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 93 OD2 REMARK 620 2 ASP B 108 OD1 86.0 REMARK 620 3 ALA B 109 O 110.4 90.2 REMARK 620 4 HOH B 494 O 82.4 163.1 82.3 REMARK 620 5 DA J 1 OP3 152.9 94.4 96.8 101.6 REMARK 620 6 DA J 1 OP2 96.3 95.7 153.1 97.8 56.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 93 OD1 REMARK 620 2 HOH D 572 O 83.5 REMARK 620 3 DA K 4 O3' 164.6 81.2 REMARK 620 4 HOH K 337 O 95.1 83.3 81.0 REMARK 620 5 DA L 1 OP2 100.8 102.3 84.5 163.6 REMARK 620 6 HOH L 168 O 100.0 176.3 95.3 95.1 78.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 93 OD2 REMARK 620 2 ASP D 108 OD2 83.0 REMARK 620 3 ALA D 109 O 111.4 88.6 REMARK 620 4 HOH D 571 O 89.7 167.8 84.9 REMARK 620 5 DA L 1 OP3 150.3 93.8 97.9 97.4 REMARK 620 6 DA L 1 OP2 97.6 93.8 150.9 96.9 53.0 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E52 RELATED DB: PDB REMARK 900 HINDIII/DNA COMPLEX (NOT CLEAVED) DBREF 3A4K A 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3A4K C 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3A4K B 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3A4K D 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3A4K E 1 4 PDB 3A4K 3A4K 1 4 DBREF 3A4K F 1 8 PDB 3A4K 3A4K 1 8 DBREF 3A4K G 1 4 PDB 3A4K 3A4K 1 4 DBREF 3A4K H 1 8 PDB 3A4K 3A4K 1 8 DBREF 3A4K I 1 4 PDB 3A4K 3A4K 1 4 DBREF 3A4K J 1 8 PDB 3A4K 3A4K 1 8 DBREF 3A4K K 1 4 PDB 3A4K 3A4K 1 4 DBREF 3A4K L 1 8 PDB 3A4K 3A4K 1 8 DBREF 3A4K M 1 12 PDB 3A4K 3A4K 1 12 DBREF 3A4K N 1 12 PDB 3A4K 3A4K 1 12 SEQADV 3A4K HIS A -1 UNP P43870 EXPRESSION TAG SEQADV 3A4K HIS C -1 UNP P43870 EXPRESSION TAG SEQADV 3A4K HIS B -1 UNP P43870 EXPRESSION TAG SEQADV 3A4K HIS D -1 UNP P43870 EXPRESSION TAG SEQRES 1 A 301 HIS MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU SEQRES 2 A 301 ILE GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR SEQRES 3 A 301 ASN SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN SEQRES 4 A 301 GLU VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO SEQRES 5 A 301 GLU ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SEQRES 6 A 301 SER LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN SEQRES 7 A 301 LEU LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY SEQRES 8 A 301 ASN ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN SEQRES 9 A 301 TYR GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER SEQRES 10 A 301 ARG THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA SEQRES 11 A 301 LEU SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU SEQRES 12 A 301 THR ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN SEQRES 13 A 301 ILE PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SEQRES 14 A 301 SER TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU SEQRES 15 A 301 GLU GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN SEQRES 16 A 301 PHE PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP SEQRES 17 A 301 ALA GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE SEQRES 18 A 301 MET ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN SEQRES 19 A 301 LEU LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER SEQRES 20 A 301 LEU ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE SEQRES 21 A 301 ILE LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU SEQRES 22 A 301 LEU LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE SEQRES 23 A 301 ASP SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU SEQRES 24 A 301 TYR LEU SEQRES 1 C 301 HIS MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU SEQRES 2 C 301 ILE GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR SEQRES 3 C 301 ASN SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN SEQRES 4 C 301 GLU VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO SEQRES 5 C 301 GLU ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SEQRES 6 C 301 SER LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN SEQRES 7 C 301 LEU LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY SEQRES 8 C 301 ASN ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN SEQRES 9 C 301 TYR GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER SEQRES 10 C 301 ARG THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA SEQRES 11 C 301 LEU SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU SEQRES 12 C 301 THR ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN SEQRES 13 C 301 ILE PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SEQRES 14 C 301 SER TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU SEQRES 15 C 301 GLU GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN SEQRES 16 C 301 PHE PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP SEQRES 17 C 301 ALA GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE SEQRES 18 C 301 MET ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN SEQRES 19 C 301 LEU LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER SEQRES 20 C 301 LEU ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE SEQRES 21 C 301 ILE LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU SEQRES 22 C 301 LEU LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE SEQRES 23 C 301 ASP SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU SEQRES 24 C 301 TYR LEU SEQRES 1 B 301 HIS MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU SEQRES 2 B 301 ILE GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR SEQRES 3 B 301 ASN SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN SEQRES 4 B 301 GLU VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO SEQRES 5 B 301 GLU ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SEQRES 6 B 301 SER LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN SEQRES 7 B 301 LEU LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY SEQRES 8 B 301 ASN ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN SEQRES 9 B 301 TYR GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER SEQRES 10 B 301 ARG THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA SEQRES 11 B 301 LEU SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU SEQRES 12 B 301 THR ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN SEQRES 13 B 301 ILE PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SEQRES 14 B 301 SER TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU SEQRES 15 B 301 GLU GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN SEQRES 16 B 301 PHE PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP SEQRES 17 B 301 ALA GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE SEQRES 18 B 301 MET ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN SEQRES 19 B 301 LEU LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER SEQRES 20 B 301 LEU ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE SEQRES 21 B 301 ILE LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU SEQRES 22 B 301 LEU LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE SEQRES 23 B 301 ASP SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU SEQRES 24 B 301 TYR LEU SEQRES 1 D 301 HIS MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU SEQRES 2 D 301 ILE GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR SEQRES 3 D 301 ASN SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN SEQRES 4 D 301 GLU VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO SEQRES 5 D 301 GLU ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SEQRES 6 D 301 SER LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN SEQRES 7 D 301 LEU LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY SEQRES 8 D 301 ASN ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN SEQRES 9 D 301 TYR GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER SEQRES 10 D 301 ARG THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA SEQRES 11 D 301 LEU SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU SEQRES 12 D 301 THR ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN SEQRES 13 D 301 ILE PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SEQRES 14 D 301 SER TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU SEQRES 15 D 301 GLU GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN SEQRES 16 D 301 PHE PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP SEQRES 17 D 301 ALA GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE SEQRES 18 D 301 MET ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN SEQRES 19 D 301 LEU LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER SEQRES 20 D 301 LEU ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE SEQRES 21 D 301 ILE LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU SEQRES 22 D 301 LEU LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE SEQRES 23 D 301 ASP SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU SEQRES 24 D 301 TYR LEU SEQRES 1 E 4 DG DC DC DA SEQRES 1 F 8 DA DG DC DT DT DG DG DC SEQRES 1 G 4 DG DC DC DA SEQRES 1 H 8 DA DG DC DT DT DG DG DC SEQRES 1 I 4 DG DC DC DA SEQRES 1 J 8 DA DG DC DT DT DG DG DC SEQRES 1 K 4 DG DC DC DA SEQRES 1 L 8 DA DG DC DT DT DG DG DC SEQRES 1 M 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 N 12 DG DC DC DA DA DG DC DT DT DG DG DC HET MG A 301 1 HET MN A 302 1 HET GOL A 300 6 HET MG C 301 1 HET MN C 302 1 HET ACT C 300 4 HET MG B 301 1 HET MN B 302 1 HET ACT B 300 4 HET ACT B 303 4 HET MG D 301 1 HET MN D 302 1 HET GOL D 300 6 HET ACT D 303 4 HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 15 MG 4(MG 2+) FORMUL 16 MN 4(MN 2+) FORMUL 17 GOL 2(C3 H8 O3) FORMUL 20 ACT 4(C2 H3 O2 1-) FORMUL 29 HOH *573(H2 O) HELIX 1 1 ALA A 4 GLU A 13 1 10 HELIX 2 2 PHE A 20 LYS A 33 1 14 HELIX 3 3 ARG A 36 ILE A 46 1 11 HELIX 4 4 THR A 58 LEU A 77 1 20 HELIX 5 5 GLN A 121 PHE A 124 1 4 HELIX 6 6 VAL A 126 TRP A 132 1 7 HELIX 7 7 PHE A 145 GLN A 147 5 3 HELIX 8 8 GLN A 154 GLU A 162 1 9 HELIX 9 9 TRP A 169 GLN A 177 1 9 HELIX 10 10 GLU A 189 SER A 199 1 11 HELIX 11 11 VAL A 204 ASP A 206 5 3 HELIX 12 12 MET A 212 PHE A 223 1 12 HELIX 13 13 LYS A 227 ILE A 258 1 32 HELIX 14 14 ARG A 264 ASP A 274 1 11 HELIX 15 15 MET A 277 LYS A 292 1 16 HELIX 16 16 ASN A 294 LEU A 297 5 4 HELIX 17 17 ALA C 4 ASN C 14 1 11 HELIX 18 18 PHE C 20 TYR C 32 1 13 HELIX 19 19 ARG C 36 ILE C 46 1 11 HELIX 20 20 THR C 58 LEU C 77 1 20 HELIX 21 21 GLN C 121 PHE C 124 1 4 HELIX 22 22 VAL C 126 TRP C 132 1 7 HELIX 23 23 PHE C 145 GLN C 147 5 3 HELIX 24 24 GLN C 154 GLU C 162 1 9 HELIX 25 25 TRP C 169 GLN C 177 1 9 HELIX 26 26 GLU C 189 SER C 199 1 11 HELIX 27 27 VAL C 204 ASP C 206 5 3 HELIX 28 28 MET C 212 PHE C 223 1 12 HELIX 29 29 LYS C 227 LYS C 260 1 34 HELIX 30 30 ARG C 264 ILE C 275 1 12 HELIX 31 31 MET C 277 LYS C 292 1 16 HELIX 32 32 ASN C 294 LEU C 297 5 4 HELIX 33 33 ALA B 4 LEU B 15 1 12 HELIX 34 34 PHE B 20 LYS B 33 1 14 HELIX 35 35 ARG B 36 ILE B 46 1 11 HELIX 36 36 THR B 58 LEU B 77 1 20 HELIX 37 37 GLN B 121 PHE B 124 1 4 HELIX 38 38 VAL B 126 TRP B 132 1 7 HELIX 39 39 PHE B 145 GLN B 147 5 3 HELIX 40 40 GLN B 154 GLU B 162 1 9 HELIX 41 41 TRP B 169 GLN B 177 1 9 HELIX 42 42 GLU B 189 LYS B 200 1 12 HELIX 43 43 MET B 212 PHE B 223 1 12 HELIX 44 44 LYS B 227 LYS B 260 1 34 HELIX 45 45 ARG B 264 ILE B 275 1 12 HELIX 46 46 MET B 277 ILE B 291 1 15 HELIX 47 47 ASN B 294 LEU B 297 5 4 HELIX 48 48 ALA D 4 GLU D 13 1 10 HELIX 49 49 PHE D 20 TYR D 32 1 13 HELIX 50 50 ARG D 36 SER D 45 1 10 HELIX 51 51 THR D 58 LEU D 77 1 20 HELIX 52 52 GLN D 121 PHE D 124 1 4 HELIX 53 53 VAL D 126 TRP D 132 1 7 HELIX 54 54 PHE D 145 GLN D 147 5 3 HELIX 55 55 GLN D 154 GLU D 162 1 9 HELIX 56 56 TRP D 169 GLN D 177 1 9 HELIX 57 57 GLU D 189 SER D 199 1 11 HELIX 58 58 MET D 212 PHE D 223 1 12 HELIX 59 59 LYS D 227 LYS D 260 1 34 HELIX 60 60 ARG D 264 ILE D 275 1 12 HELIX 61 61 MET D 277 ILE D 291 1 15 HELIX 62 62 ASN D 294 LEU D 297 5 4 SHEET 1 A 2 ILE A 48 LEU A 49 0 SHEET 2 A 2 PHE A 112 ARG A 113 1 O PHE A 112 N LEU A 49 SHEET 1 B 5 LEU A 80 PRO A 84 0 SHEET 2 B 5 VAL A 94 SER A 98 -1 O LEU A 97 N ASN A 81 SHEET 3 B 5 GLY A 104 ALA A 109 -1 O ALA A 107 N VAL A 94 SHEET 4 B 5 TYR A 138 ALA A 143 1 O THR A 142 N ASP A 108 SHEET 5 B 5 VAL A 164 SER A 168 1 O PHE A 167 N LEU A 141 SHEET 1 C 2 ILE C 48 LEU C 49 0 SHEET 2 C 2 PHE C 112 ARG C 113 1 O PHE C 112 N LEU C 49 SHEET 1 D 5 LEU C 80 PRO C 84 0 SHEET 2 D 5 VAL C 94 SER C 98 -1 O LEU C 97 N ASN C 81 SHEET 3 D 5 GLY C 104 ALA C 109 -1 O ALA C 107 N VAL C 94 SHEET 4 D 5 TYR C 138 ALA C 143 1 O THR C 142 N ASP C 108 SHEET 5 D 5 LEU C 165 SER C 168 1 O LEU C 165 N LEU C 141 SHEET 1 E 2 ILE B 48 LEU B 49 0 SHEET 2 E 2 PHE B 112 ARG B 113 1 O PHE B 112 N LEU B 49 SHEET 1 F 5 LEU B 80 PRO B 84 0 SHEET 2 F 5 VAL B 94 SER B 98 -1 O LEU B 97 N ASN B 81 SHEET 3 F 5 GLY B 104 ALA B 109 -1 O ALA B 107 N VAL B 94 SHEET 4 F 5 TYR B 138 ALA B 143 1 O THR B 142 N ASP B 108 SHEET 5 F 5 VAL B 164 SER B 168 1 O LEU B 165 N LEU B 141 SHEET 1 G 2 ILE D 48 LEU D 49 0 SHEET 2 G 2 PHE D 112 ARG D 113 1 O PHE D 112 N LEU D 49 SHEET 1 H 5 LEU D 80 PRO D 84 0 SHEET 2 H 5 VAL D 94 SER D 98 -1 O LEU D 97 N ASN D 81 SHEET 3 H 5 GLY D 104 ALA D 109 -1 O ALA D 107 N VAL D 94 SHEET 4 H 5 TYR D 138 ALA D 143 1 O THR D 142 N ASP D 108 SHEET 5 H 5 LEU D 165 SER D 168 1 O LEU D 165 N LEU D 141 LINK OD1 ASP A 93 MG MG A 301 1555 1555 1.92 LINK OD2 ASP A 93 MN MN A 302 1555 1555 2.01 LINK OD2 ASP A 108 MN MN A 302 1555 1555 2.12 LINK O ALA A 109 MN MN A 302 1555 1555 2.05 LINK MG MG A 301 O HOH A 320 1555 1555 2.06 LINK MG MG A 301 O HOH A 386 1555 1555 2.03 LINK MG MG A 301 O3' DA E 4 1555 1555 2.12 LINK MG MG A 301 O HOH E 258 1555 1555 2.30 LINK MG MG A 301 OP2 DA F 1 1555 1555 1.93 LINK MN MN A 302 O HOH A 570 1555 1555 2.07 LINK MN MN A 302 OP3 DA F 1 1555 1555 1.89 LINK OD1 ASP C 93 MG MG C 301 1555 1555 2.15 LINK OD2 ASP C 93 MN MN C 302 1555 1555 1.98 LINK OD2 ASP C 108 MN MN C 302 1555 1555 2.23 LINK O ALA C 109 MN MN C 302 1555 1555 2.14 LINK MG MG C 301 O HOH C 421 1555 1555 2.26 LINK MG MG C 301 O3' DA G 4 1555 1555 2.11 LINK MG MG C 301 OP3 DA H 1 1555 1555 2.02 LINK MG MG C 301 O HOH H 84 1555 1555 2.10 LINK MN MN C 302 O HOH C 573 1555 1555 2.28 LINK MN MN C 302 OP1 DA H 1 1555 1555 1.98 LINK MN MN C 302 OP3 DA H 1 1555 1555 2.66 LINK OD1 ASP B 93 MG MG B 301 1555 1555 2.08 LINK OD2 ASP B 93 MN MN B 302 1555 1555 2.01 LINK OD1 ASP B 108 MN MN B 302 1555 1555 2.16 LINK O ALA B 109 MN MN B 302 1555 1555 2.04 LINK MG MG B 301 O HOH B 333 1555 1555 2.10 LINK MG MG B 301 O HOH B 342 1555 1555 2.20 LINK MG MG B 301 O HOH B 378 1555 1555 2.12 LINK MG MG B 301 O3' DA I 4 1555 1555 2.38 LINK MG MG B 301 OP2 DA J 1 1555 1555 2.12 LINK MN MN B 302 O HOH B 494 1555 1555 2.17 LINK MN MN B 302 OP3 DA J 1 1555 1555 1.99 LINK MN MN B 302 OP2 DA J 1 1555 1555 2.58 LINK OD1 ASP D 93 MG MG D 301 1555 1555 1.91 LINK OD2 ASP D 93 MN MN D 302 1555 1555 2.07 LINK OD2 ASP D 108 MN MN D 302 1555 1555 2.17 LINK O ALA D 109 MN MN D 302 1555 1555 2.09 LINK MG MG D 301 O HOH D 572 1555 1555 1.97 LINK MG MG D 301 O3' DA K 4 1555 1555 2.06 LINK MG MG D 301 O HOH K 337 1555 1555 2.15 LINK MG MG D 301 OP2 DA L 1 1555 1555 2.12 LINK MG MG D 301 O HOH L 168 1555 1555 2.10 LINK MN MN D 302 O HOH D 571 1555 1555 2.15 LINK MN MN D 302 OP3 DA L 1 1555 1555 2.00 LINK MN MN D 302 OP2 DA L 1 1555 1555 2.67 SITE 1 AC1 6 ASP A 93 HOH A 320 HOH A 386 DA E 4 SITE 2 AC1 6 HOH E 258 DA F 1 SITE 1 AC2 5 ASP A 93 ASP A 108 ALA A 109 HOH A 570 SITE 2 AC2 5 DA F 1 SITE 1 AC3 3 GLU A 100 ASN A 102 ASP D 221 SITE 1 AC4 5 ASP C 93 HOH C 421 DA G 4 DA H 1 SITE 2 AC4 5 HOH H 84 SITE 1 AC5 5 ASP C 93 ASP C 108 ALA C 109 HOH C 573 SITE 2 AC5 5 DA H 1 SITE 1 AC6 4 ASP C 161 SER C 199 THR C 202 VAL C 204 SITE 1 AC7 6 ASP B 93 HOH B 333 HOH B 342 HOH B 378 SITE 2 AC7 6 DA I 4 DA J 1 SITE 1 AC8 5 ASP B 93 ASP B 108 ALA B 109 HOH B 494 SITE 2 AC8 5 DA J 1 SITE 1 AC9 4 LYS B 99 GLU B 100 ASN B 102 ASP C 221 SITE 1 BC1 3 ASP B 161 SER B 199 THR B 202 SITE 1 BC2 6 ASP D 93 HOH D 572 DA K 4 HOH K 337 SITE 2 BC2 6 DA L 1 HOH L 168 SITE 1 BC3 5 ASP D 93 ASP D 108 ALA D 109 HOH D 571 SITE 2 BC3 5 DA L 1 SITE 1 BC4 6 LYS D 201 ASN D 209 ASN D 210 ASP D 214 SITE 2 BC4 6 HOH D 338 HOH D 376 SITE 1 BC5 5 ASP D 161 SER D 199 THR D 202 SER D 203 SITE 2 BC5 5 ALA D 207 CRYST1 83.460 132.211 94.070 90.00 111.03 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011982 0.000000 0.004607 0.00000 SCALE2 0.000000 0.007564 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011389 0.00000