HEADER TRANSFERASE 13-JUL-09 3A4P TITLE HUMAN C-MET KINASE DOMAIN COMPLEXED WITH 6-BENZYLOXYQUINOLINE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TYROSINE KINASE DOMAIN, RESIDUES IN UNP 1049-1360; COMPND 5 SYNONYM: HGF RECEPTOR, SCATTER FACTOR RECEPTOR, SF RECEPTOR, HGF/SF COMPND 6 RECEPTOR, MET PROTO-ONCOGENE TYROSINE KINASE, C-MET; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS C-MET, TYROSINE-PROTEIN KINASE, HEPATOCYTE GROWTH FACTOR RECEPTOR, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.A.FUKAMI,S.KADONO,M.YAMAMURO,T.MATSUURA REVDAT 4 01-NOV-23 3A4P 1 REMARK REVDAT 3 10-NOV-21 3A4P 1 REMARK SEQADV REVDAT 2 13-JUL-11 3A4P 1 VERSN REVDAT 1 16-FEB-10 3A4P 0 JRNL AUTH H.NISHII,T.CHIBA,K.MORIKAMI,T.A.FUKAMI,H.SAKAMOTO,K.KO, JRNL AUTH 2 H.KOYANO JRNL TITL DISCOVERY OF 6-BENZYLOXYQUINOLINES AS C-MET SELECTIVE KINASE JRNL TITL 2 INHIBITORS JRNL REF BIOORG.MED.CHEM.LETT. V. 20 1405 2010 JRNL REFN ISSN 0960-894X JRNL PMID 20093027 JRNL DOI 10.1016/J.BMCL.2009.12.109 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 484 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 693 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2256 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 1.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.512 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.306 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.372 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2348 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3181 ; 1.813 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.620 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;35.256 ;23.367 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;18.286 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.835 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1753 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1419 ; 0.791 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2299 ; 1.468 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 929 ; 2.394 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 882 ; 3.715 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1063 A 1161 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6548 -26.0305 7.1818 REMARK 3 T TENSOR REMARK 3 T11: 0.3597 T22: 0.6260 REMARK 3 T33: 0.4019 T12: 0.0065 REMARK 3 T13: -0.0239 T23: -0.0589 REMARK 3 L TENSOR REMARK 3 L11: 5.7802 L22: 2.7157 REMARK 3 L33: 5.1518 L12: -0.7160 REMARK 3 L13: -1.0857 L23: -1.0832 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.1946 S13: -0.0114 REMARK 3 S21: 0.2317 S22: -0.1198 S23: -0.8191 REMARK 3 S31: -0.1972 S32: 1.5768 S33: 0.0777 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1162 A 1360 REMARK 3 ORIGIN FOR THE GROUP (A): -32.8500 -13.4131 15.8317 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0441 REMARK 3 T33: 0.0478 T12: -0.0237 REMARK 3 T13: -0.0002 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.8905 L22: 3.5511 REMARK 3 L33: 2.5749 L12: -0.6110 REMARK 3 L13: -0.1030 L23: 0.9339 REMARK 3 S TENSOR REMARK 3 S11: -0.0781 S12: 0.1800 S13: 0.2564 REMARK 3 S21: -0.2396 S22: 0.1290 S23: -0.3195 REMARK 3 S31: -0.2206 S32: 0.2043 S33: -0.0509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3A4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000028807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 76.696 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : 0.14600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : 0.65000 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID 1R1W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14%(W/V) PEG MME 5000, 5%(V/V) REMARK 280 ISOPROPANOL, 12%(V/V) MPD, 0.1M TRIS-CL, 15%(V/V) GLYCEROL, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.61350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.36650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.61350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.36650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1042 REMARK 465 PRO A 1043 REMARK 465 LEU A 1044 REMARK 465 HIS A 1045 REMARK 465 MET A 1046 REMARK 465 GLY A 1047 REMARK 465 SER A 1048 REMARK 465 ASN A 1049 REMARK 465 THR A 1050 REMARK 465 VAL A 1051 REMARK 465 HIS A 1052 REMARK 465 ILE A 1053 REMARK 465 ASP A 1054 REMARK 465 LEU A 1055 REMARK 465 SER A 1056 REMARK 465 ALA A 1057 REMARK 465 LEU A 1058 REMARK 465 ASN A 1059 REMARK 465 PRO A 1060 REMARK 465 GLU A 1061 REMARK 465 LEU A 1062 REMARK 465 ASN A 1100 REMARK 465 ASP A 1101 REMARK 465 GLY A 1102 REMARK 465 GLU A 1233 REMARK 465 PHE A 1234 REMARK 465 ASP A 1235 REMARK 465 SER A 1236 REMARK 465 VAL A 1237 REMARK 465 HIS A 1238 REMARK 465 ASN A 1239 REMARK 465 LYS A 1240 REMARK 465 THR A 1241 REMARK 465 GLY A 1242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1104 CE NZ REMARK 470 ARG A1114 CD NE CZ NH1 NH2 REMARK 470 ILE A1115 CG1 CG2 CD1 REMARK 470 ILE A1118 CG1 CG2 CD1 REMARK 470 LYS A1244 CE NZ REMARK 470 LYS A1259 CE NZ REMARK 470 LYS A1360 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1279 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1116 -25.60 -162.77 REMARK 500 PHE A1134 57.76 -107.01 REMARK 500 ARG A1203 -18.18 79.13 REMARK 500 ASP A1204 50.93 -141.89 REMARK 500 ALA A1206 145.52 -174.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 1361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DFQ A 1362 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WGJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN REMARK 900 RELATED ID: 1R1W RELATED DB: PDB REMARK 900 THE SAME PROTEIN DBREF 3A4P A 1049 1360 UNP P08581 MET_HUMAN 1049 1360 SEQADV 3A4P GLY A 1042 UNP P08581 EXPRESSION TAG SEQADV 3A4P PRO A 1043 UNP P08581 EXPRESSION TAG SEQADV 3A4P LEU A 1044 UNP P08581 EXPRESSION TAG SEQADV 3A4P HIS A 1045 UNP P08581 EXPRESSION TAG SEQADV 3A4P MET A 1046 UNP P08581 EXPRESSION TAG SEQADV 3A4P GLY A 1047 UNP P08581 EXPRESSION TAG SEQADV 3A4P SER A 1048 UNP P08581 EXPRESSION TAG SEQADV 3A4P PHE A 1194 UNP P08581 TYR 1194 ENGINEERED MUTATION SEQADV 3A4P PHE A 1234 UNP P08581 TYR 1234 ENGINEERED MUTATION SEQADV 3A4P ASP A 1235 UNP P08581 TYR 1235 ENGINEERED MUTATION SEQRES 1 A 319 GLY PRO LEU HIS MET GLY SER ASN THR VAL HIS ILE ASP SEQRES 2 A 319 LEU SER ALA LEU ASN PRO GLU LEU VAL GLN ALA VAL GLN SEQRES 3 A 319 HIS VAL VAL ILE GLY PRO SER SER LEU ILE VAL HIS PHE SEQRES 4 A 319 ASN GLU VAL ILE GLY ARG GLY HIS PHE GLY CYS VAL TYR SEQRES 5 A 319 HIS GLY THR LEU LEU ASP ASN ASP GLY LYS LYS ILE HIS SEQRES 6 A 319 CYS ALA VAL LYS SER LEU ASN ARG ILE THR ASP ILE GLY SEQRES 7 A 319 GLU VAL SER GLN PHE LEU THR GLU GLY ILE ILE MET LYS SEQRES 8 A 319 ASP PHE SER HIS PRO ASN VAL LEU SER LEU LEU GLY ILE SEQRES 9 A 319 CYS LEU ARG SER GLU GLY SER PRO LEU VAL VAL LEU PRO SEQRES 10 A 319 TYR MET LYS HIS GLY ASP LEU ARG ASN PHE ILE ARG ASN SEQRES 11 A 319 GLU THR HIS ASN PRO THR VAL LYS ASP LEU ILE GLY PHE SEQRES 12 A 319 GLY LEU GLN VAL ALA LYS GLY MET LYS PHE LEU ALA SER SEQRES 13 A 319 LYS LYS PHE VAL HIS ARG ASP LEU ALA ALA ARG ASN CYS SEQRES 14 A 319 MET LEU ASP GLU LYS PHE THR VAL LYS VAL ALA ASP PHE SEQRES 15 A 319 GLY LEU ALA ARG ASP MET TYR ASP LYS GLU PHE ASP SER SEQRES 16 A 319 VAL HIS ASN LYS THR GLY ALA LYS LEU PRO VAL LYS TRP SEQRES 17 A 319 MET ALA LEU GLU SER LEU GLN THR GLN LYS PHE THR THR SEQRES 18 A 319 LYS SER ASP VAL TRP SER PHE GLY VAL LEU LEU TRP GLU SEQRES 19 A 319 LEU MET THR ARG GLY ALA PRO PRO TYR PRO ASP VAL ASN SEQRES 20 A 319 THR PHE ASP ILE THR VAL TYR LEU LEU GLN GLY ARG ARG SEQRES 21 A 319 LEU LEU GLN PRO GLU TYR CYS PRO ASP PRO LEU TYR GLU SEQRES 22 A 319 VAL MET LEU LYS CYS TRP HIS PRO LYS ALA GLU MET ARG SEQRES 23 A 319 PRO SER PHE SER GLU LEU VAL SER ARG ILE SER ALA ILE SEQRES 24 A 319 PHE SER THR PHE ILE GLY GLU HIS TYR VAL HIS VAL ASN SEQRES 25 A 319 ALA THR TYR VAL ASN VAL LYS HET CL A 1 1 HET IPA A1361 4 HET IPA A 2 4 HET DFQ A1362 28 HETNAM CL CHLORIDE ION HETNAM IPA ISOPROPYL ALCOHOL HETNAM DFQ (2E)-3-{6-[(1R)-1-(2,6-DICHLORO-3-FLUOROPHENYL) HETNAM 2 DFQ ETHOXY]QUINOLIN-3-YL}-N-METHYLPROP-2-ENAMIDE HETSYN IPA 2-PROPANOL HETSYN DFQ (E)-3-{6-[(1R)-1-(2,6-DICHLORO-3-FLUORO-PHENYL)- HETSYN 2 DFQ ETHOXY]-QUINOLIN-3-YL}-N-METHYL-ACRYLAMIDE FORMUL 2 CL CL 1- FORMUL 3 IPA 2(C3 H8 O) FORMUL 5 DFQ C21 H17 CL2 F N2 O2 FORMUL 6 HOH *41(H2 O) HELIX 1 1 GLN A 1064 HIS A 1068 5 5 HELIX 2 2 GLY A 1072 SER A 1074 5 3 HELIX 3 3 ASP A 1117 LYS A 1132 1 16 HELIX 4 4 ASP A 1164 ASN A 1171 1 8 HELIX 5 5 THR A 1177 LYS A 1198 1 22 HELIX 6 6 ALA A 1206 ARG A 1208 5 3 HELIX 7 7 PHE A 1223 ARG A 1227 5 5 HELIX 8 8 PRO A 1246 MET A 1250 5 5 HELIX 9 9 ALA A 1251 GLN A 1258 1 8 HELIX 10 10 THR A 1261 THR A 1278 1 18 HELIX 11 11 ASP A 1291 GLN A 1298 1 8 HELIX 12 12 PRO A 1309 TRP A 1320 1 12 HELIX 13 13 LYS A 1323 ARG A 1327 5 5 HELIX 14 14 SER A 1329 SER A 1342 1 14 SHEET 1 A 6 VAL A1070 ILE A1071 0 SHEET 2 A 6 GLY A1144 CYS A1146 1 O ILE A1145 N ILE A1071 SHEET 3 A 6 LEU A1154 PRO A1158 -1 O VAL A1156 N GLY A1144 SHEET 4 A 6 ILE A1105 SER A1111 -1 N ALA A1108 O LEU A1157 SHEET 5 A 6 GLY A1090 LEU A1097 -1 N TYR A1093 O VAL A1109 SHEET 6 A 6 LEU A1076 GLY A1087 -1 N ILE A1084 O VAL A1092 SHEET 1 B 2 CYS A1210 LEU A1212 0 SHEET 2 B 2 VAL A1218 VAL A1220 -1 O LYS A1219 N MET A1211 SITE 1 AC1 5 HOH A 21 LYS A1179 GLY A1346 GLU A1347 SITE 2 AC1 5 HIS A1348 SITE 1 AC2 5 ARG A1208 ASN A1209 TYR A1230 ASP A1231 SITE 2 AC2 5 DFQ A1362 SITE 1 AC3 4 ASP A1310 TYR A1313 GLU A1314 SER A1335 SITE 1 AC4 16 ILE A1084 VAL A1092 ALA A1108 LEU A1157 SITE 2 AC4 16 PRO A1158 TYR A1159 MET A1160 LYS A1161 SITE 3 AC4 16 HIS A1162 GLY A1163 ASN A1209 MET A1211 SITE 4 AC4 16 ALA A1221 ASP A1222 TYR A1230 IPA A1361 CRYST1 157.227 42.733 46.039 90.00 102.91 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006360 0.000000 0.001460 0.00000 SCALE2 0.000000 0.023400 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022280 0.00000