HEADER HYDROLASE 22-JUL-09 3A4X TITLE CRYSTAL STRUCTURES OF CATALYTIC SITE MUTANTS OF ACTIVE DOMAIN 2 OF TITLE 2 THERMOSTABLE CHITINASE FROM PYROCOCCUS FURIOSUS COMPLEXED WITH CHITO- TITLE 3 OLIGOSACCHARIDES CAVEAT 3A4X NAG C 3 HAS WRONG CHIRALITY AT ATOM C2 NAG D 3 HAS WRONG CAVEAT 2 3A4X CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (AD2), UNP RESIDUES 409-717; COMPND 5 EC: 3.2.1.14; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: PF1233; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32 KEYWDS ARCHAEA, CHITINASE, GLYCOSYL HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.TSUJI,S.NISHIMURA,T.INUI,K.ISHIKAWA,T.NAKAMURA,K.UEGAKI REVDAT 4 01-NOV-23 3A4X 1 HETSYN REVDAT 3 29-JUL-20 3A4X 1 CAVEAT COMPND REMARK SEQADV REVDAT 3 2 1 HETNAM LINK SITE ATOM REVDAT 2 29-DEC-10 3A4X 1 JRNL REVDAT 1 09-JUN-10 3A4X 0 JRNL AUTH H.TSUJI,S.NISHIMURA,T.INUI,Y.KADO,K.ISHIKAWA,T.NAKAMURA, JRNL AUTH 2 K.UEGAKI JRNL TITL KINETIC AND CRYSTALLOGRAPHIC ANALYSES OF THE CATALYTIC JRNL TITL 2 DOMAIN OF CHITINASE FROM PYROCOCCUS FURIOSUS- THE ROLE OF JRNL TITL 3 CONSERVED RESIDUES IN THE ACTIVE SITE JRNL REF FEBS J. V. 277 2683 2010 JRNL REFN ISSN 1742-464X JRNL PMID 20553502 JRNL DOI 10.1111/J.1742-464X.2010.07685.X REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 83308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4399 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5693 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 311 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4760 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 151 REMARK 3 SOLVENT ATOMS : 641 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.453 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5135 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7016 ; 1.414 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 620 ; 5.899 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;35.197 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 789 ;11.638 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.639 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 773 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3886 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3025 ; 0.564 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4908 ; 1.087 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2110 ; 1.851 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2097 ; 3.083 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000028815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88323 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2DSK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, PH6.0, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.90800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.97150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.90800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.97150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 707 REMARK 465 ALA A 708 REMARK 465 GLN A 709 REMARK 465 THR A 710 REMARK 465 SER A 711 REMARK 465 GLU A 712 REMARK 465 ALA A 713 REMARK 465 SER A 714 REMARK 465 VAL A 715 REMARK 465 PRO A 716 REMARK 465 THR A 717 REMARK 465 SER B 707 REMARK 465 ALA B 708 REMARK 465 GLN B 709 REMARK 465 THR B 710 REMARK 465 SER B 711 REMARK 465 GLU B 712 REMARK 465 ALA B 713 REMARK 465 SER B 714 REMARK 465 VAL B 715 REMARK 465 PRO B 716 REMARK 465 THR B 717 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 SO4 A 719 O HOH A 857 1.89 REMARK 500 O2 SO4 A 719 O HOH A 858 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 814 O HOH B 248 3554 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 461 17.72 55.62 REMARK 500 SER A 463 -18.22 -153.96 REMARK 500 ALA A 563 -121.38 -96.86 REMARK 500 TYR A 590 -34.82 67.51 REMARK 500 LYS A 638 -1.49 78.97 REMARK 500 SER B 463 -30.82 -145.58 REMARK 500 ALA B 563 -123.70 -94.69 REMARK 500 TYR B 590 -38.92 69.57 REMARK 500 LYS B 638 -2.54 76.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A4W RELATED DB: PDB REMARK 900 RELATED ID: 3AFB RELATED DB: PDB DBREF 3A4X A 409 717 UNP Q8U1H5 Q8U1H5_PYRFU 409 717 DBREF 3A4X B 409 717 UNP Q8U1H5 Q8U1H5_PYRFU 409 717 SEQADV 3A4X GLY A 407 UNP Q8U1H5 EXPRESSION TAG SEQADV 3A4X PRO A 408 UNP Q8U1H5 EXPRESSION TAG SEQADV 3A4X ALA A 524 UNP Q8U1H5 ASP 524 ENGINEERED MUTATION SEQADV 3A4X GLY B 407 UNP Q8U1H5 EXPRESSION TAG SEQADV 3A4X PRO B 408 UNP Q8U1H5 EXPRESSION TAG SEQADV 3A4X ALA B 524 UNP Q8U1H5 ASP 524 ENGINEERED MUTATION SEQRES 1 A 311 GLY PRO ASN ALA ASN PRO ILE PRO GLU HIS PHE PHE ALA SEQRES 2 A 311 PRO TYR ILE ASP MET SER LEU SER VAL HIS LYS PRO LEU SEQRES 3 A 311 VAL GLU TYR ALA LYS LEU THR GLY THR LYS TYR PHE THR SEQRES 4 A 311 LEU ALA PHE ILE LEU TYR SER SER VAL TYR ASN GLY PRO SEQRES 5 A 311 ALA TRP ALA GLY SER ILE PRO LEU GLU LYS PHE VAL ASP SEQRES 6 A 311 GLU VAL ARG GLU LEU ARG GLU ILE GLY GLY GLU VAL ILE SEQRES 7 A 311 ILE ALA PHE GLY GLY ALA VAL GLY PRO TYR LEU CYS GLN SEQRES 8 A 311 GLN ALA SER THR PRO GLU GLN LEU ALA GLU TRP TYR ILE SEQRES 9 A 311 LYS VAL ILE ASP THR TYR ASN ALA THR TYR LEU ASP PHE SEQRES 10 A 311 ALA ILE GLU ALA GLY ILE ASP ALA ASP LYS LEU ALA ASP SEQRES 11 A 311 ALA LEU LEU ILE VAL GLN ARG GLU ARG PRO TRP VAL LYS SEQRES 12 A 311 PHE SER PHE THR LEU PRO SER ASP PRO GLY ILE GLY LEU SEQRES 13 A 311 ALA GLY GLY TYR GLY ILE ILE GLU THR MET ALA LYS LYS SEQRES 14 A 311 GLY VAL ARG VAL ASP ARG VAL ASN PRO MET THR MET ASP SEQRES 15 A 311 TYR TYR TRP THR PRO SER ASN ALA GLU ASN ALA ILE LYS SEQRES 16 A 311 VAL ALA GLU ASN VAL PHE ARG GLN LEU LYS GLN ILE TYR SEQRES 17 A 311 PRO GLU LYS SER ASP GLU GLU ILE TRP LYS MET ILE GLY SEQRES 18 A 311 LEU THR PRO MET ILE GLY VAL ASN ASP ASP LYS SER VAL SEQRES 19 A 311 PHE THR LEU GLU ASP ALA GLN GLN LEU VAL ASP TRP ALA SEQRES 20 A 311 ILE GLN HIS LYS ILE GLY SER LEU ALA PHE TRP SER VAL SEQRES 21 A 311 ASP ARG ASP HIS PRO GLY PRO THR GLY GLU VAL SER PRO SEQRES 22 A 311 LEU HIS ARG GLY THR ASN ASP PRO ASP TRP ALA PHE SER SEQRES 23 A 311 HIS VAL PHE VAL LYS PHE MET GLU ALA PHE GLY TYR THR SEQRES 24 A 311 PHE SER ALA GLN THR SER GLU ALA SER VAL PRO THR SEQRES 1 B 311 GLY PRO ASN ALA ASN PRO ILE PRO GLU HIS PHE PHE ALA SEQRES 2 B 311 PRO TYR ILE ASP MET SER LEU SER VAL HIS LYS PRO LEU SEQRES 3 B 311 VAL GLU TYR ALA LYS LEU THR GLY THR LYS TYR PHE THR SEQRES 4 B 311 LEU ALA PHE ILE LEU TYR SER SER VAL TYR ASN GLY PRO SEQRES 5 B 311 ALA TRP ALA GLY SER ILE PRO LEU GLU LYS PHE VAL ASP SEQRES 6 B 311 GLU VAL ARG GLU LEU ARG GLU ILE GLY GLY GLU VAL ILE SEQRES 7 B 311 ILE ALA PHE GLY GLY ALA VAL GLY PRO TYR LEU CYS GLN SEQRES 8 B 311 GLN ALA SER THR PRO GLU GLN LEU ALA GLU TRP TYR ILE SEQRES 9 B 311 LYS VAL ILE ASP THR TYR ASN ALA THR TYR LEU ASP PHE SEQRES 10 B 311 ALA ILE GLU ALA GLY ILE ASP ALA ASP LYS LEU ALA ASP SEQRES 11 B 311 ALA LEU LEU ILE VAL GLN ARG GLU ARG PRO TRP VAL LYS SEQRES 12 B 311 PHE SER PHE THR LEU PRO SER ASP PRO GLY ILE GLY LEU SEQRES 13 B 311 ALA GLY GLY TYR GLY ILE ILE GLU THR MET ALA LYS LYS SEQRES 14 B 311 GLY VAL ARG VAL ASP ARG VAL ASN PRO MET THR MET ASP SEQRES 15 B 311 TYR TYR TRP THR PRO SER ASN ALA GLU ASN ALA ILE LYS SEQRES 16 B 311 VAL ALA GLU ASN VAL PHE ARG GLN LEU LYS GLN ILE TYR SEQRES 17 B 311 PRO GLU LYS SER ASP GLU GLU ILE TRP LYS MET ILE GLY SEQRES 18 B 311 LEU THR PRO MET ILE GLY VAL ASN ASP ASP LYS SER VAL SEQRES 19 B 311 PHE THR LEU GLU ASP ALA GLN GLN LEU VAL ASP TRP ALA SEQRES 20 B 311 ILE GLN HIS LYS ILE GLY SER LEU ALA PHE TRP SER VAL SEQRES 21 B 311 ASP ARG ASP HIS PRO GLY PRO THR GLY GLU VAL SER PRO SEQRES 22 B 311 LEU HIS ARG GLY THR ASN ASP PRO ASP TRP ALA PHE SER SEQRES 23 B 311 HIS VAL PHE VAL LYS PHE MET GLU ALA PHE GLY TYR THR SEQRES 24 B 311 PHE SER ALA GLN THR SER GLU ALA SER VAL PRO THR HET NDG C 1 15 HET NAG C 2 14 HET NAG C 3 14 HET NAG C 4 14 HET NDG D 1 15 HET NAG D 2 14 HET NAG D 3 14 HET NAG D 4 14 HET MG A 718 1 HET SO4 A 719 5 HET GOL A 720 6 HET GOL A 721 6 HET MG B 718 1 HET GOL B 720 6 HET GOL B 721 6 HET GOL B 5 6 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NDG 2(C8 H15 N O6) FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 5 MG 2(MG 2+) FORMUL 6 SO4 O4 S 2- FORMUL 7 GOL 5(C3 H8 O3) FORMUL 13 HOH *641(H2 O) HELIX 1 1 PRO A 431 GLY A 440 1 10 HELIX 2 2 PRO A 465 LYS A 468 5 4 HELIX 3 3 PHE A 469 GLU A 478 1 10 HELIX 4 4 TYR A 494 ALA A 499 1 6 HELIX 5 5 THR A 501 ASN A 517 1 17 HELIX 6 6 ASP A 530 ARG A 545 1 16 HELIX 7 7 GLY A 564 GLY A 576 1 13 HELIX 8 8 ASN A 595 TYR A 614 1 20 HELIX 9 9 SER A 618 ILE A 626 1 9 HELIX 10 10 THR A 642 LYS A 657 1 16 HELIX 11 11 SER A 665 ASP A 669 5 5 HELIX 12 12 TRP A 689 ALA A 701 1 13 HELIX 13 13 PRO B 431 GLY B 440 1 10 HELIX 14 14 PRO B 465 LYS B 468 5 4 HELIX 15 15 PHE B 469 GLU B 478 1 10 HELIX 16 16 TYR B 494 ALA B 499 1 6 HELIX 17 17 THR B 501 ASN B 517 1 17 HELIX 18 18 ASP B 530 ARG B 545 1 16 HELIX 19 19 GLY B 564 GLY B 576 1 13 HELIX 20 20 ASN B 595 TYR B 614 1 20 HELIX 21 21 SER B 618 ILE B 626 1 9 HELIX 22 22 THR B 642 LYS B 657 1 16 HELIX 23 23 SER B 665 ASP B 669 5 5 HELIX 24 24 TRP B 689 ALA B 701 1 13 SHEET 1 A 3 PHE A 417 PHE A 418 0 SHEET 2 A 3 SER A 660 LEU A 661 1 O LEU A 661 N PHE A 417 SHEET 3 A 3 GLY A 627 LEU A 628 1 N LEU A 628 O SER A 660 SHEET 1 B 6 TYR A 421 ASP A 423 0 SHEET 2 B 6 TYR A 443 SER A 452 1 O ALA A 447 N ILE A 422 SHEET 3 B 6 GLU A 482 GLY A 488 1 O ILE A 484 N LEU A 446 SHEET 4 B 6 TYR A 520 ALA A 524 1 O ALA A 524 N PHE A 487 SHEET 5 B 6 LYS A 549 ASP A 557 1 O SER A 551 N LEU A 521 SHEET 6 B 6 GLY A 561 LEU A 562 -1 O GLY A 561 N ASP A 557 SHEET 1 C 6 GLY A 457 TRP A 460 0 SHEET 2 C 6 TYR A 443 SER A 452 -1 N SER A 452 O GLY A 457 SHEET 3 C 6 GLU A 482 GLY A 488 1 O ILE A 484 N LEU A 446 SHEET 4 C 6 TYR A 520 ALA A 524 1 O ALA A 524 N PHE A 487 SHEET 5 C 6 LYS A 549 ASP A 557 1 O SER A 551 N LEU A 521 SHEET 6 C 6 ARG A 581 MET A 585 1 O ASN A 583 N PHE A 552 SHEET 1 D 2 GLY A 633 VAL A 634 0 SHEET 2 D 2 VAL A 640 PHE A 641 -1 O PHE A 641 N GLY A 633 SHEET 1 E 3 PHE B 417 PHE B 418 0 SHEET 2 E 3 SER B 660 LEU B 661 1 O LEU B 661 N PHE B 417 SHEET 3 E 3 GLY B 627 LEU B 628 1 N LEU B 628 O SER B 660 SHEET 1 F 6 TYR B 421 ASP B 423 0 SHEET 2 F 6 TYR B 443 SER B 452 1 O ALA B 447 N ILE B 422 SHEET 3 F 6 GLU B 482 GLY B 488 1 O ILE B 484 N LEU B 446 SHEET 4 F 6 TYR B 520 ALA B 524 1 O ALA B 524 N PHE B 487 SHEET 5 F 6 LYS B 549 ASP B 557 1 O SER B 551 N LEU B 521 SHEET 6 F 6 GLY B 561 LEU B 562 -1 O GLY B 561 N ASP B 557 SHEET 1 G 6 GLY B 457 TRP B 460 0 SHEET 2 G 6 TYR B 443 SER B 452 -1 N LEU B 450 O ALA B 459 SHEET 3 G 6 GLU B 482 GLY B 488 1 O ILE B 484 N LEU B 446 SHEET 4 G 6 TYR B 520 ALA B 524 1 O ALA B 524 N PHE B 487 SHEET 5 G 6 LYS B 549 ASP B 557 1 O SER B 551 N LEU B 521 SHEET 6 G 6 ARG B 581 MET B 585 1 O ASN B 583 N PHE B 552 SHEET 1 H 2 GLY B 633 VAL B 634 0 SHEET 2 H 2 VAL B 640 PHE B 641 -1 O PHE B 641 N GLY B 633 LINK O4 NDG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG C 2 C1 NAG C 3 1555 1555 1.45 LINK O4 NAG C 3 C1 NAG C 4 1555 1555 1.40 LINK O4 NDG D 1 C1 NAG D 2 1555 1555 1.42 LINK O4 NAG D 2 C1 NAG D 3 1555 1555 1.44 LINK O4 NAG D 3 C1 NAG D 4 1555 1555 1.41 CISPEP 1 ALA A 447 PHE A 448 0 -13.61 CISPEP 2 GLY A 492 PRO A 493 0 4.03 CISPEP 3 TRP A 664 SER A 665 0 3.77 CISPEP 4 ALA B 447 PHE B 448 0 -9.93 CISPEP 5 GLY B 492 PRO B 493 0 3.20 CISPEP 6 TRP B 664 SER B 665 0 1.46 CRYST1 89.816 91.943 107.100 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009337 0.00000