HEADER HYDROLASE 21-AUG-09 3A66 TITLE CRYSTAL STRUCTURE OF 6-AMINOHEXANOATE-DIMER HYDROLASE TITLE 2 S112A/G181D/H266N/D370Y MUTANT WITH SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-AMINOHEXANOATE-DIMER HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NYLON OLIGOMERS-DEGRADING ENZYME EII, NYLON OLIGOMERS- COMPND 5 DEGRADING ENZYME EII'; COMPND 6 EC: 3.5.1.46; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: CHIMERA OF NYLON OLIGOMERS-DEGRADING ENZYME EII COMPND 10 (RESIDUES 1-21) AND NYLON OLIGOMERS-DEGRADING ENZYME EII' (RESIDUES COMPND 11 22-392) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FLAVOBACTERIUM; SOURCE 3 ORGANISM_TAXID: 261; SOURCE 4 STRAIN: K172; SOURCE 5 GENE: NYLB, NYLB'; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KP3998; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKP1500; SOURCE 11 OTHER_DETAILS: STRAIN OF THE SOURCE ORGANISM IS DESCRIBED KI72 IN SOURCE 12 THE FIRST REFERENCE OF THE D ATABASE UNIPROTKB/SWISS-PROT P07061 SOURCE 13 (NYLB_FLASK) AND P07062 (NYLC_FLASK). KEYWDS HYDROLASE, NYLON DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KAWASHIMA,N.SHIBATA,Y.HIGUCHI,M.TAKEO,S.NEGORO REVDAT 4 15-NOV-23 3A66 1 ATOM REVDAT 3 01-NOV-23 3A66 1 REMARK SEQADV LINK REVDAT 2 09-AUG-17 3A66 1 SOURCE REMARK REVDAT 1 01-SEP-10 3A66 0 JRNL AUTH Y.KAWASHIMA,K.YASUHIRA,N.SHIBATA,Y.MATSUURA,Y.TANAKA, JRNL AUTH 2 M.TANIGUCHI,Y.MIYOSHI,M.TAKEO,D.KATO,Y.HIGUCHI,S.NEGORO JRNL TITL ENZYMATIC SYNTHESIS OF NYLON-6 UNITS IN ORGANIC SOL JRNL TITL 2 CONTAINED LOW-WATER: STRUCTURAL REQUIREMENT OF JRNL TITL 3 6-AMINOHEXANOATE-DIMER HYDROLASE FOR EFFICIENT AMID JRNL TITL 4 SYNTHESIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 614650.020 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 78616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7870 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6422 REMARK 3 BIN R VALUE (WORKING SET) : 0.4330 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 668 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2917 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 53.32 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : MES.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : SUB.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3A66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000028860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79800 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 27.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 10.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.230 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.89 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.2 REMARK 200 STARTING MODEL: PDB ENTRY 2ZM0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AMMONIUM SULFATE, 0.2M LITHIUM REMARK 280 SULFATE, 0.1M MES, PH 6.50, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.39267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.69633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.69633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.39267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.69633 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 393 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 395 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 804 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 4 REMARK 465 VAL A 53 REMARK 465 ASN A 54 REMARK 465 ALA A 55 REMARK 465 PRO A 56 REMARK 465 ASP A 169 REMARK 465 TYR A 170 REMARK 465 VAL A 171 REMARK 465 ASP A 172 REMARK 465 PRO A 173 REMARK 465 ALA A 174 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASN A 167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 38 42.45 -147.12 REMARK 500 MET A 111 -140.32 51.15 REMARK 500 GLN A 161 52.16 -114.37 REMARK 500 LEU A 243 -70.72 -137.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 123 O REMARK 620 2 ASP A 127 OD1 97.2 REMARK 620 3 ASP A 127 OD2 77.3 57.8 REMARK 620 4 SER A 296 OG 155.3 58.1 87.6 REMARK 620 5 HOH A 593 O 110.7 52.4 110.2 56.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 397 O REMARK 620 2 HOH A 549 O 110.8 REMARK 620 3 GOL A 606 O1 90.4 117.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACA A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WYB RELATED DB: PDB REMARK 900 RELATED ID: 1WYC RELATED DB: PDB REMARK 900 RELATED ID: 2DCF RELATED DB: PDB REMARK 900 RELATED ID: 2ZM0 RELATED DB: PDB REMARK 900 RELATED ID: 2ZMA RELATED DB: PDB REMARK 900 RELATED ID: 3A65 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO DEPOSITORS, ARG190 AND HIS191 ARE CORRECT AND REMARK 999 SWISSPROT IS INCORRECT AT THESE POSITIONS. DBREF 3A66 A 1 21 UNP P07061 NYLB_FLASK 1 21 DBREF 3A66 A 22 392 UNP P07062 NYLC_FLASK 22 392 SEQADV 3A66 ALA A 112 UNP P07062 SER 112 ENGINEERED MUTATION SEQADV 3A66 ASP A 181 UNP P07062 GLY 181 ENGINEERED MUTATION SEQADV 3A66 ARG A 190 UNP P07062 ALA 190 SEE REMARK 999 SEQADV 3A66 HIS A 191 UNP P07062 THR 191 SEE REMARK 999 SEQADV 3A66 ASN A 266 UNP P07062 HIS 266 ENGINEERED MUTATION SEQADV 3A66 TYR A 370 UNP P07062 ASP 370 ENGINEERED MUTATION SEQRES 1 A 392 MET ASN ALA ARG SER THR GLY GLN HIS PRO ALA ARG TYR SEQRES 2 A 392 PRO GLY ALA ALA ALA GLY GLU PRO THR LEU ASP SER TRP SEQRES 3 A 392 GLN GLU PRO PRO HIS ASN ARG TRP ALA PHE ALA HIS LEU SEQRES 4 A 392 GLY GLU MET VAL PRO SER ALA ALA VAL SER ARG ARG PRO SEQRES 5 A 392 VAL ASN ALA PRO GLY HIS ALA LEU ALA ARG LEU GLY ALA SEQRES 6 A 392 ILE ALA ALA GLN LEU PRO ASP LEU GLU GLN ARG LEU GLU SEQRES 7 A 392 GLN THR TYR THR ASP ALA PHE LEU VAL LEU ARG GLY THR SEQRES 8 A 392 GLU VAL VAL ALA GLU TYR TYR ARG ALA GLY PHE ALA PRO SEQRES 9 A 392 ASP ASP ARG HIS LEU LEU MET ALA VAL SER LYS SER LEU SEQRES 10 A 392 CYS GLY THR VAL VAL GLY ALA LEU VAL ASP GLU GLY ARG SEQRES 11 A 392 ILE ASP PRO ALA GLN PRO VAL THR GLU TYR VAL PRO GLU SEQRES 12 A 392 LEU ALA GLY SER VAL TYR ASP GLY PRO SER VAL LEU GLN SEQRES 13 A 392 VAL LEU ASP MET GLN ILE SER ILE ASP TYR ASN GLU ASP SEQRES 14 A 392 TYR VAL ASP PRO ALA SER GLU VAL GLN THR HIS ASP ARG SEQRES 15 A 392 SER ALA GLY TRP ARG THR ARG ARG HIS GLY ASP PRO ALA SEQRES 16 A 392 ASP THR TYR GLU PHE LEU THR THR LEU ARG GLY ASP GLY SEQRES 17 A 392 SER THR GLY GLU PHE GLN TYR CYS SER ALA ASN THR ASP SEQRES 18 A 392 VAL LEU ALA TRP ILE VAL GLU ARG VAL THR GLY LEU ARG SEQRES 19 A 392 TYR VAL GLU ALA LEU SER THR TYR LEU TRP ALA LYS LEU SEQRES 20 A 392 ASP ALA ASP ARG ASP ALA THR ILE THR VAL ASP THR THR SEQRES 21 A 392 GLY PHE GLY PHE ALA ASN GLY GLY VAL SER CYS THR ALA SEQRES 22 A 392 ARG ASP LEU ALA ARG VAL GLY ARG MET MET LEU ASP GLY SEQRES 23 A 392 GLY VAL ALA PRO GLY GLY ARG VAL VAL SER GLU ASP TRP SEQRES 24 A 392 VAL ARG ARG VAL LEU ALA GLY GLY SER HIS GLU ALA MET SEQRES 25 A 392 THR ASP LYS GLY PHE THR ASN THR PHE PRO ASP GLY SER SEQRES 26 A 392 TYR THR ARG GLN TRP TRP CYS THR GLY ASN GLU ARG GLY SEQRES 27 A 392 ASN VAL SER GLY ILE GLY ILE HIS GLY GLN ASN LEU TRP SEQRES 28 A 392 LEU ASP PRO LEU THR ASP SER VAL ILE VAL LYS LEU SER SEQRES 29 A 392 SER TRP PRO ASP PRO TYR THR GLU HIS TRP HIS ARG LEU SEQRES 30 A 392 GLN ASN GLY ILE LEU LEU ASP VAL SER ARG ALA LEU ASP SEQRES 31 A 392 ALA VAL HET NA A 500 1 HET NA A 501 1 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HET GOL A 607 6 HET GOL A 608 6 HET MES A 609 12 HET MES A 610 12 HET ACA A 601 9 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM ACA 6-AMINOHEXANOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN ACA AMINOCAPROIC ACID FORMUL 2 NA 2(NA 1+) FORMUL 4 GOL 7(C3 H8 O3) FORMUL 11 MES 2(C6 H13 N O4 S) FORMUL 13 ACA C6 H13 N O2 FORMUL 14 HOH *400(H2 O) HELIX 1 1 PRO A 30 PHE A 36 1 7 HELIX 2 2 ALA A 37 MET A 42 5 6 HELIX 3 3 ALA A 65 LEU A 70 1 6 HELIX 4 4 ASP A 72 THR A 80 1 9 HELIX 5 5 ALA A 112 GLU A 128 1 17 HELIX 6 6 PRO A 136 TYR A 140 5 5 HELIX 7 7 VAL A 141 ALA A 145 5 5 HELIX 8 8 SER A 153 ASP A 159 1 7 HELIX 9 9 SER A 175 GLY A 185 1 11 HELIX 10 10 ASP A 196 THR A 203 1 8 HELIX 11 11 SER A 217 GLY A 232 1 16 HELIX 12 12 ARG A 234 LEU A 243 1 10 HELIX 13 13 TRP A 244 LEU A 247 5 4 HELIX 14 14 THR A 272 ASP A 285 1 14 HELIX 15 15 SER A 296 GLY A 306 1 11 HELIX 16 16 ASP A 314 ASN A 319 1 6 HELIX 17 17 PRO A 354 THR A 356 5 3 HELIX 18 18 THR A 371 LEU A 389 1 19 SHEET 1 A 8 LEU A 60 ARG A 62 0 SHEET 2 A 8 GLU A 92 TYR A 98 -1 O GLU A 96 N ARG A 62 SHEET 3 A 8 THR A 82 ARG A 89 -1 N ARG A 89 O GLU A 92 SHEET 4 A 8 SER A 358 SER A 364 -1 O LEU A 363 N ALA A 84 SHEET 5 A 8 GLN A 348 ASP A 353 -1 N TRP A 351 O ILE A 360 SHEET 6 A 8 VAL A 340 GLY A 344 -1 N VAL A 340 O LEU A 352 SHEET 7 A 8 TRP A 330 CYS A 332 -1 N TRP A 331 O SER A 341 SHEET 8 A 8 SER A 325 THR A 327 -1 N SER A 325 O CYS A 332 SHEET 1 B 3 HIS A 108 LEU A 109 0 SHEET 2 B 3 VAL A 269 CYS A 271 -1 O CYS A 271 N HIS A 108 SHEET 3 B 3 THR A 254 ILE A 255 -1 N THR A 254 O SER A 270 SHEET 1 C 2 VAL A 288 ALA A 289 0 SHEET 2 C 2 GLY A 292 ARG A 293 -1 O GLY A 292 N ALA A 289 LINK O GLY A 123 NA NA A 500 1555 1555 2.73 LINK OD1 ASP A 127 NA NA A 500 1555 1555 2.33 LINK OD2 ASP A 127 NA NA A 500 1555 1555 2.22 LINK OG SER A 296 NA NA A 500 1555 1555 3.10 LINK O HOH A 397 NA NA A 501 1555 1555 2.52 LINK NA NA A 500 O HOH A 593 1555 1555 3.07 LINK NA NA A 501 O HOH A 549 1555 1555 2.44 LINK NA NA A 501 O1 GOL A 606 1555 1555 2.40 CISPEP 1 GLU A 20 PRO A 21 0 -0.04 CISPEP 2 PRO A 29 PRO A 30 0 -0.17 SITE 1 AC1 5 GLY A 123 ASP A 127 SER A 296 TRP A 299 SITE 2 AC1 5 HOH A 593 SITE 1 AC2 3 HOH A 397 HOH A 549 GOL A 606 SITE 1 AC3 10 PRO A 29 ASP A 159 GLN A 161 GLY A 307 SITE 2 AC3 10 SER A 308 THR A 327 ARG A 328 HOH A 451 SITE 3 AC3 10 GOL A 605 HOH A 637 SITE 1 AC4 6 ARG A 107 ASP A 250 ARG A 251 ASP A 252 SITE 2 AC4 6 HOH A 395 HOH A 523 SITE 1 AC5 7 ALA A 37 ASP A 106 ARG A 107 ARG A 251 SITE 2 AC5 7 HOH A 523 HOH A 600 HOH A 696 SITE 1 AC6 9 PRO A 29 LEU A 155 PRO A 367 ASP A 368 SITE 2 AC6 9 HOH A 454 GOL A 602 HOH A 617 HOH A 624 SITE 3 AC6 9 HOH A 665 SITE 1 AC7 10 ALA A 112 TYR A 215 ILE A 343 GLY A 344 SITE 2 AC7 10 ILE A 345 HOH A 399 NA A 501 HOH A 505 SITE 3 AC7 10 ACA A 601 GOL A 607 SITE 1 AC8 9 ASP A 314 GLY A 316 PHE A 317 TRP A 331 SITE 2 AC8 9 TYR A 370 HIS A 375 HOH A 397 HOH A 533 SITE 3 AC8 9 GOL A 606 SITE 1 AC9 4 VAL A 177 PRO A 369 HOH A 400 ACA A 601 SITE 1 BC1 12 TYR A 13 PRO A 30 TRP A 34 HIS A 38 SITE 2 BC1 12 ARG A 99 GLY A 101 HIS A 309 GLU A 310 SITE 3 BC1 12 HOH A 435 HOH A 644 HOH A 700 HOH A 742 SITE 1 BC2 6 GLN A 69 LEU A 70 PRO A 71 ASP A 72 SITE 2 BC2 6 ARG A 76 HOH A 799 SITE 1 BC3 13 MET A 111 ALA A 112 ASP A 181 TRP A 186 SITE 2 BC3 13 TYR A 215 ASN A 266 GLY A 344 ILE A 345 SITE 3 BC3 13 HOH A 400 HOH A 589 HOH A 596 GOL A 606 SITE 4 BC3 13 GOL A 608 CRYST1 96.524 96.524 113.089 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010360 0.005981 0.000000 0.00000 SCALE2 0.000000 0.011963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008843 0.00000