HEADER TRANSFERASE 27-SEP-09 3A7J TITLE HUMAN MST3 KINASE IN COMPLEX WITH MNADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE KINASE 24 (STE20 HOMOLOG, YEAST); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL KINASE DOMAIN (UNP RESIDUES 1-303); COMPND 5 SYNONYM: MST3 KINASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: STK24; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ARCTICEXPRESS(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-32 XA/LIC KEYWDS TWO-LOBE PROTEIN KINASE FOLD ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.P.KO,W.Y.JENG,C.I.LIU,M.D.LAI,A.H.J.WANG REVDAT 3 01-NOV-23 3A7J 1 REMARK LINK REVDAT 2 04-APR-12 3A7J 1 JRNL VERSN REVDAT 1 02-FEB-10 3A7J 0 JRNL AUTH T.P.KO,W.Y.JENG,C.I.LIU,M.D.LAI,C.L.WU,W.J.CHANG,H.L.SHR, JRNL AUTH 2 T.J.LU,A.H.J.WANG JRNL TITL STRUCTURES OF HUMAN MST3 KINASE IN COMPLEX WITH ADENINE, ADP JRNL TITL 2 AND MN2+. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 145 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 20124694 JRNL DOI 10.1107/S0907444909047507 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 44208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2207 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 211 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.035 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2302 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3A7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000028909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45787 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3A7I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS-HCL, 100MM NACL, 10%(V/V) REMARK 280 GLYCEROL, 5MM DITHIOTHREITOL, 10MM ADP, 0.1M TRIS-HCL, 180MM REMARK 280 MGCL2, 5MM MN-ACETATE, 13%(W/V) PEG 3350, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.76350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 6 REMARK 465 GLN A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 LEU A 10 REMARK 465 PRO A 11 REMARK 465 GLY A 12 REMARK 465 HIS A 300 REMARK 465 ASP A 301 REMARK 465 ASP A 302 REMARK 465 SER A 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 377 O HOH A 426 1.84 REMARK 500 O HOH A 357 O HOH A 431 1.85 REMARK 500 O HOH A 357 O HOH A 678 1.88 REMARK 500 O HOH A 332 O HOH A 647 1.96 REMARK 500 O HOH A 358 O HOH A 359 1.99 REMARK 500 CD ARG A 290 O HOH A 368 2.01 REMARK 500 O HOH A 375 O HOH A 377 2.02 REMARK 500 O HOH A 371 O HOH A 606 2.03 REMARK 500 O HOH A 332 O HOH A 379 2.04 REMARK 500 O HOH A 335 O HOH A 348 2.05 REMARK 500 O2B ADP A 500 O HOH A 593 2.05 REMARK 500 O HOH A 320 O HOH A 559 2.07 REMARK 500 O HOH A 433 O HOH A 557 2.07 REMARK 500 NH1 ARG A 290 O HOH A 370 2.07 REMARK 500 O HOH A 368 O HOH A 550 2.08 REMARK 500 OE1 GLU A 28 O HOH A 563 2.10 REMARK 500 O HOH A 376 O HOH A 377 2.11 REMARK 500 O HOH A 609 O HOH A 659 2.11 REMARK 500 OE1 GLN A 173 O HOH A 526 2.11 REMARK 500 OE1 GLN A 298 O HOH A 341 2.13 REMARK 500 O HOH A 550 O HOH A 551 2.15 REMARK 500 O HOH A 368 O HOH A 551 2.17 REMARK 500 O HOH A 346 O HOH A 443 2.18 REMARK 500 O HOH A 607 O HOH A 654 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 48 O HOH A 423 2555 2.03 REMARK 500 O HOH A 666 O HOH A 667 1455 2.15 REMARK 500 O HOH A 556 O HOH A 578 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 201 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 262 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 27 -143.37 -112.03 REMARK 500 GLU A 61 -94.36 -105.25 REMARK 500 ASP A 92 -128.99 59.69 REMARK 500 ARG A 143 -1.05 67.32 REMARK 500 ASP A 144 44.24 -140.65 REMARK 500 ASP A 162 79.52 71.50 REMARK 500 ASN A 177 10.00 -140.67 REMARK 500 ASP A 197 -151.42 -143.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 149 OD1 REMARK 620 2 ASP A 162 OD2 92.0 REMARK 620 3 HOH A 444 O 93.9 94.2 REMARK 620 4 ADP A 500 O2A 103.3 88.8 162.4 REMARK 620 5 HOH A 588 O 87.7 179.2 86.6 90.6 REMARK 620 6 HOH A 593 O 172.8 80.8 86.9 76.5 99.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 162 OD1 REMARK 620 2 HOH A 344 O 89.6 REMARK 620 3 ADP A 500 O1B 96.4 91.2 REMARK 620 4 HOH A 521 O 73.2 157.4 105.0 REMARK 620 5 HOH A 633 O 157.0 107.8 98.0 85.9 REMARK 620 6 HOH A 635 O 86.6 91.5 176.0 73.4 78.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A7F RELATED DB: PDB REMARK 900 UNLIGANDED PROTEIN IN C2 UNIT CELL REMARK 900 RELATED ID: 3A7G RELATED DB: PDB REMARK 900 UNLIGANDED PROTEIN IN A LARGER P21 UNIT CELL REMARK 900 RELATED ID: 3A7H RELATED DB: PDB REMARK 900 ADP COMPLEX IN THE LARGER P21 UNIT CELL REMARK 900 RELATED ID: 3A7I RELATED DB: PDB REMARK 900 ADENINE COMPLEX IN THE SAME SMALLER P21 UNIT CELL DBREF 3A7J A 1 303 UNP Q6P0Y1 Q6P0Y1_HUMAN 1 303 SEQRES 1 A 303 MET ALA HIS SER PRO VAL GLN SER GLY LEU PRO GLY MET SEQRES 2 A 303 GLN ASN LEU LYS ALA ASP PRO GLU GLU LEU PHE THR LYS SEQRES 3 A 303 LEU GLU LYS ILE GLY LYS GLY SER PHE GLY GLU VAL PHE SEQRES 4 A 303 LYS GLY ILE ASP ASN ARG THR GLN LYS VAL VAL ALA ILE SEQRES 5 A 303 LYS ILE ILE ASP LEU GLU GLU ALA GLU ASP GLU ILE GLU SEQRES 6 A 303 ASP ILE GLN GLN GLU ILE THR VAL LEU SER GLN CYS ASP SEQRES 7 A 303 SER PRO TYR VAL THR LYS TYR TYR GLY SER TYR LEU LYS SEQRES 8 A 303 ASP THR LYS LEU TRP ILE ILE MET GLU TYR LEU GLY GLY SEQRES 9 A 303 GLY SER ALA LEU ASP LEU LEU GLU PRO GLY PRO LEU ASP SEQRES 10 A 303 GLU THR GLN ILE ALA THR ILE LEU ARG GLU ILE LEU LYS SEQRES 11 A 303 GLY LEU ASP TYR LEU HIS SER GLU LYS LYS ILE HIS ARG SEQRES 12 A 303 ASP ILE LYS ALA ALA ASN VAL LEU LEU SER GLU HIS GLY SEQRES 13 A 303 GLU VAL LYS LEU ALA ASP PHE GLY VAL ALA GLY GLN LEU SEQRES 14 A 303 THR ASP THR GLN ILE LYS ARG ASN TPO PHE VAL GLY THR SEQRES 15 A 303 PRO PHE TRP MET ALA PRO GLU VAL ILE LYS GLN SER ALA SEQRES 16 A 303 TYR ASP SER LYS ALA ASP ILE TRP SER LEU GLY ILE THR SEQRES 17 A 303 ALA ILE GLU LEU ALA ARG GLY GLU PRO PRO HIS SER GLU SEQRES 18 A 303 LEU HIS PRO MET LYS VAL LEU PHE LEU ILE PRO LYS ASN SEQRES 19 A 303 ASN PRO PRO THR LEU GLU GLY ASN TYR SER LYS PRO LEU SEQRES 20 A 303 LYS GLU PHE VAL GLU ALA CYS LEU ASN LYS GLU PRO SER SEQRES 21 A 303 PHE ARG PRO THR ALA LYS GLU LEU LEU LYS HIS LYS PHE SEQRES 22 A 303 ILE LEU ARG ASN ALA LYS LYS THR SER TYR LEU THR GLU SEQRES 23 A 303 LEU ILE ASP ARG TYR LYS ARG TRP LYS ALA GLU GLN SER SEQRES 24 A 303 HIS ASP ASP SER MODRES 3A7J TPO A 178 THR PHOSPHOTHREONINE HET TPO A 178 11 HET ADP A 500 27 HET MN A 501 1 HET MN A 502 1 HETNAM TPO PHOSPHOTHREONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *383(H2 O) HELIX 1 1 PRO A 20 GLU A 22 5 3 HELIX 2 2 GLU A 63 CYS A 77 1 15 HELIX 3 3 ALA A 107 GLU A 112 1 6 HELIX 4 4 ASP A 117 GLU A 138 1 22 HELIX 5 5 LYS A 146 ALA A 148 5 3 HELIX 6 6 THR A 182 MET A 186 5 5 HELIX 7 7 ALA A 187 LYS A 192 1 6 HELIX 8 8 SER A 198 GLY A 215 1 18 HELIX 9 9 HIS A 223 ASN A 234 1 12 HELIX 10 10 SER A 244 LEU A 255 1 12 HELIX 11 11 GLU A 258 ARG A 262 5 5 HELIX 12 12 THR A 264 LEU A 269 1 6 HELIX 13 13 HIS A 271 ALA A 278 1 8 HELIX 14 14 LYS A 280 SER A 282 5 3 HELIX 15 15 TYR A 283 GLN A 298 1 16 SHEET 1 A 6 LYS A 17 ALA A 18 0 SHEET 2 A 6 TYR A 85 LYS A 91 1 O SER A 88 N LYS A 17 SHEET 3 A 6 LYS A 94 GLU A 100 -1 O ILE A 98 N TYR A 86 SHEET 4 A 6 VAL A 49 ASP A 56 -1 N ALA A 51 O MET A 99 SHEET 5 A 6 GLU A 37 ASP A 43 -1 N GLU A 37 O ILE A 54 SHEET 6 A 6 PHE A 24 LYS A 32 -1 N ILE A 30 O VAL A 38 SHEET 1 B 3 GLY A 105 SER A 106 0 SHEET 2 B 3 VAL A 150 LEU A 152 -1 O LEU A 152 N GLY A 105 SHEET 3 B 3 VAL A 158 LEU A 160 -1 O LYS A 159 N LEU A 151 SHEET 1 C 2 LYS A 140 ILE A 141 0 SHEET 2 C 2 GLY A 167 GLN A 168 -1 O GLY A 167 N ILE A 141 LINK C ASN A 177 N TPO A 178 1555 1555 1.34 LINK C TPO A 178 N PHE A 179 1555 1555 1.32 LINK OD1 ASN A 149 MN MN A 501 1555 1555 2.17 LINK OD2 ASP A 162 MN MN A 501 1555 1555 2.13 LINK OD1 ASP A 162 MN MN A 502 1555 1555 2.15 LINK O HOH A 344 MN MN A 502 1555 1555 1.97 LINK O HOH A 444 MN MN A 501 1555 1555 1.93 LINK O2A ADP A 500 MN MN A 501 1555 1555 2.16 LINK O1B ADP A 500 MN MN A 502 1555 1555 2.01 LINK MN MN A 501 O HOH A 588 1555 1555 2.15 LINK MN MN A 501 O HOH A 593 1555 1555 1.97 LINK MN MN A 502 O HOH A 521 1555 1555 2.10 LINK MN MN A 502 O HOH A 633 1555 1555 2.11 LINK MN MN A 502 O HOH A 635 1555 1555 2.15 SITE 1 AC1 22 ILE A 30 GLY A 33 SER A 34 PHE A 35 SITE 2 AC1 22 VAL A 38 ALA A 51 LYS A 53 MET A 99 SITE 3 AC1 22 GLU A 100 LEU A 102 ASN A 149 LEU A 151 SITE 4 AC1 22 ASP A 162 HOH A 344 MN A 501 MN A 502 SITE 5 AC1 22 HOH A 520 HOH A 544 HOH A 588 HOH A 589 SITE 6 AC1 22 HOH A 591 HOH A 593 SITE 1 AC2 6 ASN A 149 ASP A 162 HOH A 444 ADP A 500 SITE 2 AC2 6 HOH A 588 HOH A 593 SITE 1 AC3 6 ASP A 162 HOH A 344 ADP A 500 HOH A 521 SITE 2 AC3 6 HOH A 633 HOH A 635 CRYST1 47.816 53.527 60.634 90.00 109.95 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020914 0.000000 0.007591 0.00000 SCALE2 0.000000 0.018682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017545 0.00000