HEADER PROTEIN TRANSPORT 01-OCT-09 3A7P TITLE THE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY PROTEIN 16; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATG16, CYTOPLASM TO VACUOLE TARGETING PROTEIN 11, SAP18 COMPND 5 HOMOLOG; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ATG16; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P KEYWDS COILED-COIL, AUTOPHAGY, COILED COIL, CYTOPLASMIC VESICLE, PROTEIN KEYWDS 2 TRANSPORT, TRANSPORT, VACUOLE EXPDTA X-RAY DIFFRACTION AUTHOR Y.FUJIOKA,N.N.NODA,F.INAGAKI REVDAT 4 01-NOV-23 3A7P 1 REMARK REVDAT 3 18-OCT-23 3A7P 1 JRNL REVDAT 2 10-NOV-21 3A7P 1 SEQADV REVDAT 1 03-NOV-09 3A7P 0 JRNL AUTH Y.FUJIOKA,N.N.NODA,H.NAKATOGAWA,Y.OHSUMI,F.INAGAKI JRNL TITL DIMERIC COILED-COIL STRUCTURE OF SACCHAROMYCES CEREVISIAE JRNL TITL 2 ATG16 AND ITS FUNCTIONAL SIGNIFICANCE IN AUTOPHAGY. JRNL REF J.BIOL.CHEM. V. 285 1508 2010 JRNL REFN ESSN 1083-351X JRNL PMID 19889643 JRNL DOI 10.1074/JBC.M109.053520 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 13763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1390 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4360 REMARK 3 BIN FREE R VALUE : 0.4810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.59000 REMARK 3 B22 (A**2) : -18.59000 REMARK 3 B33 (A**2) : 37.18000 REMARK 3 B12 (A**2) : -25.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 16.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.680 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.290 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3A7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000028915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15085 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3A7O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M CALCIUM CHLORIDE, 0.1M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.19067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.09533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 104.19067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.09533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 104.19067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 52.09533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 104.19067 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.09533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 163 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 PHE A 4 REMARK 465 ILE A 5 REMARK 465 ILE A 6 REMARK 465 THR A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 11 REMARK 465 ALA A 12 REMARK 465 LYS A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 ASN A 18 REMARK 465 PRO A 19 REMARK 465 GLN A 20 REMARK 465 THR A 21 REMARK 465 ASP A 22 REMARK 465 SER A 23 REMARK 465 MET A 24 REMARK 465 ASP A 25 REMARK 465 ASP A 26 REMARK 465 LEU A 27 REMARK 465 LEU A 28 REMARK 465 ILE A 29 REMARK 465 ARG A 30 REMARK 465 ARG A 31 REMARK 465 LEU A 32 REMARK 465 THR A 33 REMARK 465 ASP A 34 REMARK 465 ARG A 35 REMARK 465 ASN A 36 REMARK 465 ASP A 37 REMARK 465 LYS A 38 REMARK 465 GLU A 39 REMARK 465 ALA A 40 REMARK 465 HIS A 41 REMARK 465 LEU A 42 REMARK 465 ASN A 43 REMARK 465 GLU A 44 REMARK 465 LEU A 45 REMARK 465 PHE A 46 REMARK 465 GLN A 47 REMARK 465 ASP A 48 REMARK 465 ASN A 49 REMARK 465 SER A 50 REMARK 465 GLY A 51 REMARK 465 ALA A 52 REMARK 465 ILE A 53 REMARK 465 GLY A 54 REMARK 465 ASN A 143 REMARK 465 SER A 144 REMARK 465 GLU A 145 REMARK 465 ILE A 146 REMARK 465 ASP A 147 REMARK 465 GLY A 148 REMARK 465 THR A 149 REMARK 465 LYS A 150 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ASN B 3 REMARK 465 PHE B 4 REMARK 465 ILE B 5 REMARK 465 ILE B 6 REMARK 465 THR B 7 REMARK 465 GLU B 8 REMARK 465 ARG B 9 REMARK 465 LYS B 10 REMARK 465 LYS B 11 REMARK 465 ALA B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 GLU B 15 REMARK 465 ARG B 16 REMARK 465 SER B 17 REMARK 465 ASN B 18 REMARK 465 PRO B 19 REMARK 465 GLN B 20 REMARK 465 THR B 21 REMARK 465 ASP B 22 REMARK 465 SER B 23 REMARK 465 MET B 24 REMARK 465 ASP B 25 REMARK 465 ASP B 26 REMARK 465 LEU B 27 REMARK 465 LEU B 28 REMARK 465 ILE B 29 REMARK 465 ARG B 30 REMARK 465 ARG B 31 REMARK 465 LEU B 32 REMARK 465 THR B 33 REMARK 465 ASP B 34 REMARK 465 ARG B 35 REMARK 465 ASN B 36 REMARK 465 ASP B 37 REMARK 465 LYS B 38 REMARK 465 GLU B 39 REMARK 465 ALA B 40 REMARK 465 HIS B 41 REMARK 465 LEU B 42 REMARK 465 ASN B 43 REMARK 465 GLU B 44 REMARK 465 LEU B 45 REMARK 465 PHE B 46 REMARK 465 GLN B 47 REMARK 465 ASP B 48 REMARK 465 ASN B 49 REMARK 465 SER B 50 REMARK 465 GLY B 51 REMARK 465 ALA B 52 REMARK 465 ILE B 53 REMARK 465 GLY B 54 REMARK 465 GLY B 55 REMARK 465 ASN B 56 REMARK 465 ILE B 57 REMARK 465 LYS B 134 REMARK 465 THR B 135 REMARK 465 GLU B 136 REMARK 465 LYS B 137 REMARK 465 GLU B 138 REMARK 465 THR B 139 REMARK 465 GLU B 140 REMARK 465 ALA B 141 REMARK 465 MET B 142 REMARK 465 ASN B 143 REMARK 465 SER B 144 REMARK 465 GLU B 145 REMARK 465 ILE B 146 REMARK 465 ASP B 147 REMARK 465 GLY B 148 REMARK 465 THR B 149 REMARK 465 LYS B 150 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 56 CG OD1 ND2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 MET A 142 CG SD CE REMARK 470 VAL B 58 CG1 CG2 REMARK 470 SER B 59 OG REMARK 470 LYS B 133 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 101 -70.97 -60.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A7O RELATED DB: PDB DBREF 3A7P A 1 150 UNP Q03818 ATG16_YEAST 1 150 DBREF 3A7P B 1 150 UNP Q03818 ATG16_YEAST 1 150 SEQADV 3A7P GLY A -1 UNP Q03818 EXPRESSION TAG SEQADV 3A7P PRO A 0 UNP Q03818 EXPRESSION TAG SEQADV 3A7P ALA A 101 UNP Q03818 ASP 101 ENGINEERED MUTATION SEQADV 3A7P ALA A 102 UNP Q03818 GLU 102 ENGINEERED MUTATION SEQADV 3A7P GLY B -1 UNP Q03818 EXPRESSION TAG SEQADV 3A7P PRO B 0 UNP Q03818 EXPRESSION TAG SEQADV 3A7P ALA B 101 UNP Q03818 ASP 101 ENGINEERED MUTATION SEQADV 3A7P ALA B 102 UNP Q03818 GLU 102 ENGINEERED MUTATION SEQRES 1 A 152 GLY PRO MET GLY ASN PHE ILE ILE THR GLU ARG LYS LYS SEQRES 2 A 152 ALA LYS GLU GLU ARG SER ASN PRO GLN THR ASP SER MET SEQRES 3 A 152 ASP ASP LEU LEU ILE ARG ARG LEU THR ASP ARG ASN ASP SEQRES 4 A 152 LYS GLU ALA HIS LEU ASN GLU LEU PHE GLN ASP ASN SER SEQRES 5 A 152 GLY ALA ILE GLY GLY ASN ILE VAL SER HIS ASP ASP ALA SEQRES 6 A 152 LEU LEU ASN THR LEU ALA ILE LEU GLN LYS GLU LEU LYS SEQRES 7 A 152 SER LYS GLU GLN GLU ILE ARG ARG LEU LYS GLU VAL ILE SEQRES 8 A 152 ALA LEU LYS ASN LYS ASN THR GLU ARG LEU ASN ALA ALA SEQRES 9 A 152 LEU ILE SER GLY THR ILE GLU ASN ASN VAL LEU GLN GLN SEQRES 10 A 152 LYS LEU SER ASP LEU LYS LYS GLU HIS SER GLN LEU VAL SEQRES 11 A 152 ALA ARG TRP LEU LYS LYS THR GLU LYS GLU THR GLU ALA SEQRES 12 A 152 MET ASN SER GLU ILE ASP GLY THR LYS SEQRES 1 B 152 GLY PRO MET GLY ASN PHE ILE ILE THR GLU ARG LYS LYS SEQRES 2 B 152 ALA LYS GLU GLU ARG SER ASN PRO GLN THR ASP SER MET SEQRES 3 B 152 ASP ASP LEU LEU ILE ARG ARG LEU THR ASP ARG ASN ASP SEQRES 4 B 152 LYS GLU ALA HIS LEU ASN GLU LEU PHE GLN ASP ASN SER SEQRES 5 B 152 GLY ALA ILE GLY GLY ASN ILE VAL SER HIS ASP ASP ALA SEQRES 6 B 152 LEU LEU ASN THR LEU ALA ILE LEU GLN LYS GLU LEU LYS SEQRES 7 B 152 SER LYS GLU GLN GLU ILE ARG ARG LEU LYS GLU VAL ILE SEQRES 8 B 152 ALA LEU LYS ASN LYS ASN THR GLU ARG LEU ASN ALA ALA SEQRES 9 B 152 LEU ILE SER GLY THR ILE GLU ASN ASN VAL LEU GLN GLN SEQRES 10 B 152 LYS LEU SER ASP LEU LYS LYS GLU HIS SER GLN LEU VAL SEQRES 11 B 152 ALA ARG TRP LEU LYS LYS THR GLU LYS GLU THR GLU ALA SEQRES 12 B 152 MET ASN SER GLU ILE ASP GLY THR LYS FORMUL 3 HOH *28(H2 O) HELIX 1 1 GLY A 55 MET A 142 1 88 HELIX 2 2 ASP B 61 ALA B 129 1 69 HELIX 3 3 ARG B 130 LYS B 133 5 4 CRYST1 114.191 114.191 156.286 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008757 0.005056 0.000000 0.00000 SCALE2 0.000000 0.010112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006399 0.00000