HEADER APOPTOSIS 19-NOV-09 3AAJ TITLE CRYSTAL STRUCTURE OF CA2+-BOUND FORM OF DES3-23ALG-2DELTAGF122 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-191; COMPND 5 SYNONYM: CALCIUM-BINDING PROTEIN ALG-2, APOPTOSIS-LINKED GENE 2 COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS PENTA-EF-HAND PROTEIN, CALCIUM-BINDING PROTEIN, APOPTOSIS, KEYWDS 2 ENDOPLASMIC RETICULUM EXPDTA X-RAY DIFFRACTION AUTHOR H.SUZUKI,T.INUZUKA,M.KAWASAKI,H.SHIBATA,S.WAKATSUKI,M.MAKI REVDAT 2 01-NOV-23 3AAJ 1 REMARK SEQADV LINK REVDAT 1 08-SEP-10 3AAJ 0 JRNL AUTH T.INUZUKA,H.SUZUKI,M.KAWASAKI,H.SHIBATA,S.WAKATSUKI,M.MAKI JRNL TITL MOLECULAR BASIS FOR DEFECT IN ALIX-BINDING BY ALTERNATIVELY JRNL TITL 2 SPLICED ISOFORM OF ALG-2 (ALG-2DELTAGF122) AND STRUCTURAL JRNL TITL 3 ROLES OF F122 IN TARGET RECOGNITION JRNL REF BMC STRUCT.BIOL. V. 10 25 2010 JRNL REFN ESSN 1472-6807 JRNL PMID 20691033 JRNL DOI 10.1186/1472-6807-10-25 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 14094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 786 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 980 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2739 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.478 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.292 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.689 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2800 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3784 ; 1.675 ; 1.912 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.016 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;31.849 ;23.804 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 479 ;18.557 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;25.100 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2189 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1627 ; 0.922 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2637 ; 1.797 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1173 ; 2.910 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1147 ; 4.752 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; CNS 1.21 WAS ALSO USED IN REFINEMENT. REMARK 4 REMARK 4 3AAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000029016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1HQV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M CACODYLATE, 2.5% PEG 4000, 0.3M REMARK 280 AMMONIUM ACETATE, 0.01M CACL2, PH 6.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.47000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 2 REMARK 465 ASP B 24 REMARK 465 GLN B 25 REMARK 465 SER B 26 REMARK 465 PHE B 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 -78.98 -109.05 REMARK 500 ASN A 61 105.05 -45.47 REMARK 500 ARG B 39 12.31 53.24 REMARK 500 ASN B 61 109.58 -55.63 REMARK 500 GLU B 75 40.67 -109.17 REMARK 500 ASN B 76 82.74 20.05 REMARK 500 LYS B 77 16.16 -144.99 REMARK 500 ASN B 106 27.00 49.34 REMARK 500 ARG B 123 57.11 -110.14 REMARK 500 ASP B 167 45.30 -85.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 991 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD1 REMARK 620 2 ASP A 38 OD2 91.4 REMARK 620 3 SER A 40 OG 98.6 72.1 REMARK 620 4 VAL A 42 O 86.9 148.1 76.7 REMARK 620 5 GLU A 47 OE1 99.1 132.6 148.9 79.0 REMARK 620 6 GLU A 47 OE2 101.4 80.2 146.0 131.4 52.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 992 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 105 OD2 76.9 REMARK 620 3 SER A 107 OG 85.4 76.3 REMARK 620 4 MET A 109 O 82.2 152.5 84.5 REMARK 620 5 GLU A 114 OE2 87.0 73.3 149.6 123.5 REMARK 620 6 GLU A 114 OE1 100.7 126.4 157.3 74.8 53.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 993 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD1 REMARK 620 2 ASP A 169 OD1 80.0 REMARK 620 3 ASP A 171 OD1 84.9 90.2 REMARK 620 4 TRP A 173 O 80.4 160.3 90.6 REMARK 620 5 HOH A 207 O 167.1 112.4 98.1 87.0 REMARK 620 6 HOH A 208 O 97.2 86.1 175.3 93.9 80.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 992 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 36 OD1 REMARK 620 2 ASP B 38 OD1 85.9 REMARK 620 3 SER B 40 OG 96.3 78.2 REMARK 620 4 VAL B 42 O 102.4 153.5 75.9 REMARK 620 5 GLU B 47 OE2 98.2 73.5 147.0 128.8 REMARK 620 6 GLU B 47 OE1 107.9 123.8 147.5 78.0 51.1 REMARK 620 7 HOH B 194 O 173.5 95.8 77.9 73.4 88.3 76.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 991 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 103 OD1 REMARK 620 2 ASP B 105 OD2 76.4 REMARK 620 3 SER B 107 OG 90.7 82.5 REMARK 620 4 MET B 109 O 87.4 152.9 76.0 REMARK 620 5 GLU B 114 OE2 89.0 76.5 158.5 125.4 REMARK 620 6 GLU B 114 OE1 105.8 130.1 145.7 75.0 54.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 993 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 167 OD1 REMARK 620 2 ASP B 169 OD1 87.8 REMARK 620 3 ASP B 171 OD1 81.0 102.3 REMARK 620 4 TRP B 173 O 84.2 168.8 84.3 REMARK 620 5 HOH B 198 O 164.7 100.2 84.5 89.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 991 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 992 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 993 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 991 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 992 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 993 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HQV RELATED DB: PDB REMARK 900 APOPTOSIS-LINKED PROTEIN ALG-2 REMARK 900 RELATED ID: 2ZNE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZN+-BOUND FORM OF DES3-23ALG-2 COMPLEXED WITH REMARK 900 ALIX ABS PEPTIDE REMARK 900 RELATED ID: 2ZND RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CA2+-FREE FORM OF DES3-20ALG-2 REMARK 900 RELATED ID: 2ZN9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CA2+-BOUND FORM OF DES3-20ALG-2 REMARK 900 RELATED ID: 2ZN8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZN2+-BOUND FORM OF ALG-2 REMARK 900 RELATED ID: 2ZRT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZN2+-BOUND FORM OF DES3-23ALG-2 REMARK 900 RELATED ID: 2ZRS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CA2+-BOUND FORM OF DES3-23ALG-2 REMARK 900 RELATED ID: 3AAK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZN2+-BOUND FORM OF DES3-20ALG-2F122A DBREF 3AAJ A 2 189 UNP O75340 PDCD6_HUMAN 2 191 DBREF 3AAJ B 2 189 UNP O75340 PDCD6_HUMAN 2 191 SEQADV 3AAJ A UNP O75340 ALA 3 DELETION SEQADV 3AAJ A UNP O75340 TYR 4 DELETION SEQADV 3AAJ A UNP O75340 SER 5 DELETION SEQADV 3AAJ A UNP O75340 TYR 6 DELETION SEQADV 3AAJ A UNP O75340 ARG 7 DELETION SEQADV 3AAJ A UNP O75340 PRO 8 DELETION SEQADV 3AAJ A UNP O75340 GLY 9 DELETION SEQADV 3AAJ A UNP O75340 PRO 10 DELETION SEQADV 3AAJ A UNP O75340 GLY 11 DELETION SEQADV 3AAJ A UNP O75340 ALA 12 DELETION SEQADV 3AAJ A UNP O75340 GLY 13 DELETION SEQADV 3AAJ A UNP O75340 PRO 14 DELETION SEQADV 3AAJ A UNP O75340 GLY 15 DELETION SEQADV 3AAJ A UNP O75340 PRO 16 DELETION SEQADV 3AAJ A UNP O75340 ALA 17 DELETION SEQADV 3AAJ A UNP O75340 ALA 18 DELETION SEQADV 3AAJ A UNP O75340 GLY 19 DELETION SEQADV 3AAJ A UNP O75340 ALA 20 DELETION SEQADV 3AAJ A UNP O75340 ALA 21 DELETION SEQADV 3AAJ A UNP O75340 LEU 22 DELETION SEQADV 3AAJ A UNP O75340 PRO 23 DELETION SEQADV 3AAJ A UNP O75340 GLY 121 DELETION SEQADV 3AAJ A UNP O75340 PHE 122 DELETION SEQADV 3AAJ B UNP O75340 ALA 3 DELETION SEQADV 3AAJ B UNP O75340 TYR 4 DELETION SEQADV 3AAJ B UNP O75340 SER 5 DELETION SEQADV 3AAJ B UNP O75340 TYR 6 DELETION SEQADV 3AAJ B UNP O75340 ARG 7 DELETION SEQADV 3AAJ B UNP O75340 PRO 8 DELETION SEQADV 3AAJ B UNP O75340 GLY 9 DELETION SEQADV 3AAJ B UNP O75340 PRO 10 DELETION SEQADV 3AAJ B UNP O75340 GLY 11 DELETION SEQADV 3AAJ B UNP O75340 ALA 12 DELETION SEQADV 3AAJ B UNP O75340 GLY 13 DELETION SEQADV 3AAJ B UNP O75340 PRO 14 DELETION SEQADV 3AAJ B UNP O75340 GLY 15 DELETION SEQADV 3AAJ B UNP O75340 PRO 16 DELETION SEQADV 3AAJ B UNP O75340 ALA 17 DELETION SEQADV 3AAJ B UNP O75340 ALA 18 DELETION SEQADV 3AAJ B UNP O75340 GLY 19 DELETION SEQADV 3AAJ B UNP O75340 ALA 20 DELETION SEQADV 3AAJ B UNP O75340 ALA 21 DELETION SEQADV 3AAJ B UNP O75340 LEU 22 DELETION SEQADV 3AAJ B UNP O75340 PRO 23 DELETION SEQADV 3AAJ B UNP O75340 GLY 121 DELETION SEQADV 3AAJ B UNP O75340 PHE 122 DELETION SEQRES 1 A 167 ALA ASP GLN SER PHE LEU TRP ASN VAL PHE GLN ARG VAL SEQRES 2 A 167 ASP LYS ASP ARG SER GLY VAL ILE SER ASP THR GLU LEU SEQRES 3 A 167 GLN GLN ALA LEU SER ASN GLY THR TRP THR PRO PHE ASN SEQRES 4 A 167 PRO VAL THR VAL ARG SER ILE ILE SER MET PHE ASP ARG SEQRES 5 A 167 GLU ASN LYS ALA GLY VAL ASN PHE SER GLU PHE THR GLY SEQRES 6 A 167 VAL TRP LYS TYR ILE THR ASP TRP GLN ASN VAL PHE ARG SEQRES 7 A 167 THR TYR ASP ARG ASP ASN SER GLY MET ILE ASP LYS ASN SEQRES 8 A 167 GLU LEU LYS GLN ALA LEU SER GLY TYR ARG LEU SER ASP SEQRES 9 A 167 GLN PHE HIS ASP ILE LEU ILE ARG LYS PHE ASP ARG GLN SEQRES 10 A 167 GLY ARG GLY GLN ILE ALA PHE ASP ASP PHE ILE GLN GLY SEQRES 11 A 167 CYS ILE VAL LEU GLN ARG LEU THR ASP ILE PHE ARG ARG SEQRES 12 A 167 TYR ASP THR ASP GLN ASP GLY TRP ILE GLN VAL SER TYR SEQRES 13 A 167 GLU GLN TYR LEU SER MET VAL PHE SER ILE VAL SEQRES 1 B 167 ALA ASP GLN SER PHE LEU TRP ASN VAL PHE GLN ARG VAL SEQRES 2 B 167 ASP LYS ASP ARG SER GLY VAL ILE SER ASP THR GLU LEU SEQRES 3 B 167 GLN GLN ALA LEU SER ASN GLY THR TRP THR PRO PHE ASN SEQRES 4 B 167 PRO VAL THR VAL ARG SER ILE ILE SER MET PHE ASP ARG SEQRES 5 B 167 GLU ASN LYS ALA GLY VAL ASN PHE SER GLU PHE THR GLY SEQRES 6 B 167 VAL TRP LYS TYR ILE THR ASP TRP GLN ASN VAL PHE ARG SEQRES 7 B 167 THR TYR ASP ARG ASP ASN SER GLY MET ILE ASP LYS ASN SEQRES 8 B 167 GLU LEU LYS GLN ALA LEU SER GLY TYR ARG LEU SER ASP SEQRES 9 B 167 GLN PHE HIS ASP ILE LEU ILE ARG LYS PHE ASP ARG GLN SEQRES 10 B 167 GLY ARG GLY GLN ILE ALA PHE ASP ASP PHE ILE GLN GLY SEQRES 11 B 167 CYS ILE VAL LEU GLN ARG LEU THR ASP ILE PHE ARG ARG SEQRES 12 B 167 TYR ASP THR ASP GLN ASP GLY TRP ILE GLN VAL SER TYR SEQRES 13 B 167 GLU GLN TYR LEU SER MET VAL PHE SER ILE VAL HET CA A 991 1 HET CA A 992 1 HET CA A 993 1 HET CA B 991 1 HET CA B 992 1 HET CA B 993 1 HETNAM CA CALCIUM ION FORMUL 3 CA 6(CA 2+) FORMUL 9 HOH *58(H2 O) HELIX 1 1 GLN A 25 ASP A 36 1 12 HELIX 2 2 ASP A 45 LEU A 52 1 8 HELIX 3 3 ASN A 61 ASP A 73 1 13 HELIX 4 4 ASN A 81 ASP A 103 1 23 HELIX 5 5 ASP A 111 LEU A 119 1 9 HELIX 6 6 SER A 120 ARG A 123 5 4 HELIX 7 7 SER A 125 ASP A 137 1 13 HELIX 8 8 ALA A 145 ASP A 167 1 23 HELIX 9 9 TYR A 178 SER A 187 1 10 HELIX 10 10 LEU B 28 ASP B 36 1 9 HELIX 11 11 ASP B 45 GLN B 50 1 6 HELIX 12 12 ASN B 61 ASP B 73 1 13 HELIX 13 13 ASN B 81 ASP B 103 1 23 HELIX 14 14 ASP B 111 LEU B 119 1 9 HELIX 15 15 SER B 125 ASP B 137 1 13 HELIX 16 16 ALA B 145 ARG B 165 1 21 HELIX 17 17 TYR B 178 VAL B 189 1 12 SHEET 1 A 2 ILE A 43 SER A 44 0 SHEET 2 A 2 GLY A 79 VAL A 80 -1 O VAL A 80 N ILE A 43 SHEET 1 B 2 TRP A 173 SER A 177 0 SHEET 2 B 2 TRP B 173 SER B 177 -1 O VAL B 176 N ILE A 174 SHEET 1 C 2 ILE B 43 SER B 44 0 SHEET 2 C 2 GLY B 79 VAL B 80 -1 O VAL B 80 N ILE B 43 LINK OD1 ASP A 36 CA CA A 991 1555 1555 2.22 LINK OD2 ASP A 38 CA CA A 991 1555 1555 2.46 LINK OG SER A 40 CA CA A 991 1555 1555 2.49 LINK O VAL A 42 CA CA A 991 1555 1555 2.41 LINK OE1 GLU A 47 CA CA A 991 1555 1555 2.39 LINK OE2 GLU A 47 CA CA A 991 1555 1555 2.56 LINK OD1 ASP A 103 CA CA A 992 1555 1555 2.34 LINK OD2 ASP A 105 CA CA A 992 1555 1555 2.44 LINK OG SER A 107 CA CA A 992 1555 1555 2.58 LINK O MET A 109 CA CA A 992 1555 1555 2.52 LINK OE2 GLU A 114 CA CA A 992 1555 1555 2.39 LINK OE1 GLU A 114 CA CA A 992 1555 1555 2.42 LINK OD1 ASP A 167 CA CA A 993 1555 1555 2.20 LINK OD1 ASP A 169 CA CA A 993 1555 1555 2.46 LINK OD1 ASP A 171 CA CA A 993 1555 1555 2.47 LINK O TRP A 173 CA CA A 993 1555 1555 2.42 LINK O HOH A 207 CA CA A 993 1555 1555 2.66 LINK O HOH A 208 CA CA A 993 1555 1555 2.34 LINK OD1 ASP B 36 CA CA B 992 1555 1555 2.14 LINK OD1 ASP B 38 CA CA B 992 1555 1555 2.50 LINK OG SER B 40 CA CA B 992 1555 1555 3.03 LINK O VAL B 42 CA CA B 992 1555 1555 2.51 LINK OE2 GLU B 47 CA CA B 992 1555 1555 2.48 LINK OE1 GLU B 47 CA CA B 992 1555 1555 2.60 LINK OD1 ASP B 103 CA CA B 991 1555 1555 2.24 LINK OD2 ASP B 105 CA CA B 991 1555 1555 2.40 LINK OG SER B 107 CA CA B 991 1555 1555 2.46 LINK O MET B 109 CA CA B 991 1555 1555 2.34 LINK OE2 GLU B 114 CA CA B 991 1555 1555 2.37 LINK OE1 GLU B 114 CA CA B 991 1555 1555 2.41 LINK OD1 ASP B 167 CA CA B 993 1555 1555 2.23 LINK OD1 ASP B 169 CA CA B 993 1555 1555 2.42 LINK OD1 ASP B 171 CA CA B 993 1555 1555 2.28 LINK O TRP B 173 CA CA B 993 1555 1555 2.34 LINK O HOH B 194 CA CA B 992 1555 1555 2.04 LINK O HOH B 198 CA CA B 993 1555 1555 3.09 CISPEP 1 ALA A 2 ASP A 24 0 14.44 SITE 1 AC1 5 ASP A 36 ASP A 38 SER A 40 VAL A 42 SITE 2 AC1 5 GLU A 47 SITE 1 AC2 5 ASP A 103 ASP A 105 SER A 107 MET A 109 SITE 2 AC2 5 GLU A 114 SITE 1 AC3 6 ASP A 167 ASP A 169 ASP A 171 TRP A 173 SITE 2 AC3 6 HOH A 207 HOH A 208 SITE 1 AC4 5 ASP B 103 ASP B 105 SER B 107 MET B 109 SITE 2 AC4 5 GLU B 114 SITE 1 AC5 6 ASP B 36 ASP B 38 SER B 40 VAL B 42 SITE 2 AC5 6 GLU B 47 HOH B 194 SITE 1 AC6 6 ALA A 2 ASP B 167 ASP B 169 ASP B 171 SITE 2 AC6 6 TRP B 173 HOH B 198 CRYST1 42.580 78.940 60.333 90.00 104.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023485 0.000000 0.006109 0.00000 SCALE2 0.000000 0.012668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017126 0.00000