HEADER APOPTOSIS 19-NOV-09 3AAK TITLE CRYSTAL STRUCTURE OF ZN2+-BOUND FORM OF DES3-20ALG-2F122A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-191; COMPND 5 SYNONYM: CALCIUM-BINDING PROTEIN ALG-2, APOPTOSIS-LINKED GENE 2 COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS PENTA-EF-HAND PROTEIN, CALCIUM-BINDING PROTEIN, APOPTOSIS, KEYWDS 2 ENDOPLASMIC RETICULUM EXPDTA X-RAY DIFFRACTION AUTHOR T.INUZUKA,H.SUZUKI,M.KAWASAKI,H.SHIBATA,S.WAKATSUKI,M.MAKI REVDAT 2 01-NOV-23 3AAK 1 REMARK SEQADV LINK REVDAT 1 08-SEP-10 3AAK 0 JRNL AUTH T.INUZUKA,H.SUZUKI,M.KAWASAKI,H.SHIBATA,S.WAKATSUKI,M.MAKI JRNL TITL MOLECULAR BASIS FOR DEFECT IN ALIX-BINDING BY ALTERNATIVELY JRNL TITL 2 SPLICED ISOFORM OF ALG-2 (ALG-2DELTAGF122) AND STRUCTURAL JRNL TITL 3 ROLES OF F122 IN TARGET RECOGNITION JRNL REF BMC STRUCT.BIOL. V. 10 25 2010 JRNL REFN ESSN 1472-6807 JRNL PMID 20691033 JRNL DOI 10.1186/1472-6807-10-25 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 7738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 389 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 558 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1385 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.75000 REMARK 3 B22 (A**2) : -5.21000 REMARK 3 B33 (A**2) : -5.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.565 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.350 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.285 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.212 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1416 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1913 ; 0.858 ; 1.911 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 4.156 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;29.994 ;23.780 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 241 ;15.856 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.541 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 200 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1108 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 657 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1002 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 46 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.070 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 849 ; 0.313 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1335 ; 0.560 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 657 ; 0.490 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 578 ; 0.845 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; CNS 1.21 WAS ALSO USED IN REFINEMENT. REMARK 4 REMARK 4 3AAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000029017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10302 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 14.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ZN8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% 2-METHYL-2,4-PENTANEDIOL, 100MM REMARK 280 CACODYLATE, 50MM ZINC ACETATE, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.45550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.45550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.63300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.10450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.63300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.10450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.45550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.63300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.10450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 23.45550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.63300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 85.10450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 23.45550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 ASP A 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 107 O HOH A 12 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 76 50.52 -117.83 REMARK 500 ARG A 143 -4.74 -59.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 992 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 12 O REMARK 620 2 ASP A 103 OD1 146.4 REMARK 620 3 ASP A 105 OD2 71.1 129.5 REMARK 620 4 SER A 107 OG 53.4 101.6 75.7 REMARK 620 5 GLU A 114 OE1 78.2 126.5 80.6 130.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 991 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 14 O REMARK 620 2 ASP A 36 OD1 174.0 REMARK 620 3 ASP A 38 OD2 84.8 93.2 REMARK 620 4 VAL A 42 O 82.8 96.0 147.2 REMARK 620 5 GLU A 47 OE1 91.9 94.0 109.3 101.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 993 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 16 O REMARK 620 2 ASP A 171 OD2 135.4 REMARK 620 3 ASP A 173 OD2 111.1 106.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 991 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 992 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 993 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HQV RELATED DB: PDB REMARK 900 APOPTOSIS-LINKED PROTEIN ALG-2 REMARK 900 RELATED ID: 2ZNE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZN+-BOUND FORM OF DES3-23ALG-2 COMPLEXED WITH REMARK 900 ALIX ABS PEPTIDE REMARK 900 RELATED ID: 2ZND RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CA2+-FREE FORM OF DES3-20ALG-2 REMARK 900 RELATED ID: 2ZN9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CA2+-BOUND FORM OF DES3-20ALG-2 REMARK 900 RELATED ID: 2ZN8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZN2+-BOUND FORM OF ALG-2 REMARK 900 RELATED ID: 2ZRT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZN2+-BOUND FORM OF DES3-23ALG-2 REMARK 900 RELATED ID: 2ZRS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CA2+-BOUND FORM OF DES3-23ALG-2 REMARK 900 RELATED ID: 3AAJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CA2+-BOUND FORM OF DES3-23ALG-2DELTAGF122 DBREF 3AAK A 2 191 UNP O75340 PDCD6_HUMAN 2 191 SEQADV 3AAK A UNP O75340 ALA 3 DELETION SEQADV 3AAK A UNP O75340 TYR 4 DELETION SEQADV 3AAK A UNP O75340 SER 5 DELETION SEQADV 3AAK A UNP O75340 TYR 6 DELETION SEQADV 3AAK A UNP O75340 ARG 7 DELETION SEQADV 3AAK A UNP O75340 PRO 8 DELETION SEQADV 3AAK A UNP O75340 GLY 9 DELETION SEQADV 3AAK A UNP O75340 PRO 10 DELETION SEQADV 3AAK A UNP O75340 GLY 11 DELETION SEQADV 3AAK A UNP O75340 ALA 12 DELETION SEQADV 3AAK A UNP O75340 GLY 13 DELETION SEQADV 3AAK A UNP O75340 PRO 14 DELETION SEQADV 3AAK A UNP O75340 GLY 15 DELETION SEQADV 3AAK A UNP O75340 PRO 16 DELETION SEQADV 3AAK A UNP O75340 ALA 17 DELETION SEQADV 3AAK A UNP O75340 ALA 18 DELETION SEQADV 3AAK A UNP O75340 GLY 19 DELETION SEQADV 3AAK A UNP O75340 ALA 20 DELETION SEQADV 3AAK ALA A 122 UNP O75340 PHE 122 ENGINEERED MUTATION SEQRES 1 A 172 ALA ALA LEU PRO ASP GLN SER PHE LEU TRP ASN VAL PHE SEQRES 2 A 172 GLN ARG VAL ASP LYS ASP ARG SER GLY VAL ILE SER ASP SEQRES 3 A 172 THR GLU LEU GLN GLN ALA LEU SER ASN GLY THR TRP THR SEQRES 4 A 172 PRO PHE ASN PRO VAL THR VAL ARG SER ILE ILE SER MET SEQRES 5 A 172 PHE ASP ARG GLU ASN LYS ALA GLY VAL ASN PHE SER GLU SEQRES 6 A 172 PHE THR GLY VAL TRP LYS TYR ILE THR ASP TRP GLN ASN SEQRES 7 A 172 VAL PHE ARG THR TYR ASP ARG ASP ASN SER GLY MET ILE SEQRES 8 A 172 ASP LYS ASN GLU LEU LYS GLN ALA LEU SER GLY ALA GLY SEQRES 9 A 172 TYR ARG LEU SER ASP GLN PHE HIS ASP ILE LEU ILE ARG SEQRES 10 A 172 LYS PHE ASP ARG GLN GLY ARG GLY GLN ILE ALA PHE ASP SEQRES 11 A 172 ASP PHE ILE GLN GLY CYS ILE VAL LEU GLN ARG LEU THR SEQRES 12 A 172 ASP ILE PHE ARG ARG TYR ASP THR ASP GLN ASP GLY TRP SEQRES 13 A 172 ILE GLN VAL SER TYR GLU GLN TYR LEU SER MET VAL PHE SEQRES 14 A 172 SER ILE VAL HET ZN A 991 1 HET ZN A 992 1 HET ZN A 993 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) FORMUL 5 HOH *16(H2 O) HELIX 1 1 GLN A 25 ASP A 36 1 12 HELIX 2 2 ASP A 45 ALA A 51 1 7 HELIX 3 3 ASN A 61 MET A 71 1 11 HELIX 4 4 ASN A 81 TYR A 102 1 22 HELIX 5 5 LYS A 112 ALA A 122 1 11 HELIX 6 6 SER A 127 ASP A 139 1 13 HELIX 7 7 ALA A 147 ASP A 169 1 23 HELIX 8 8 SER A 179 SER A 189 1 11 SHEET 1 A 2 ILE A 43 SER A 44 0 SHEET 2 A 2 GLY A 79 VAL A 80 -1 O VAL A 80 N ILE A 43 SHEET 1 B 2 ILE A 110 ASP A 111 0 SHEET 2 B 2 GLN A 145 ILE A 146 -1 O ILE A 146 N ILE A 110 LINK O HOH A 12 ZN ZN A 992 1555 1555 2.50 LINK O HOH A 14 ZN ZN A 991 1555 1555 2.16 LINK O HOH A 16 ZN ZN A 993 1555 1555 2.61 LINK OD1 ASP A 36 ZN ZN A 991 1555 1555 1.96 LINK OD2 ASP A 38 ZN ZN A 991 1555 1555 2.13 LINK O VAL A 42 ZN ZN A 991 1555 1555 2.15 LINK OE1 GLU A 47 ZN ZN A 991 1555 1555 2.58 LINK OD1 ASP A 103 ZN ZN A 992 1555 1555 1.96 LINK OD2 ASP A 105 ZN ZN A 992 1555 1555 2.12 LINK OG SER A 107 ZN ZN A 992 1555 1555 2.03 LINK OE1 GLU A 114 ZN ZN A 992 1555 1555 2.49 LINK OD2 ASP A 171 ZN ZN A 993 1555 1555 1.94 LINK OD2 ASP A 173 ZN ZN A 993 1555 1555 1.94 SITE 1 AC1 6 HOH A 14 ASP A 36 ASP A 38 SER A 40 SITE 2 AC1 6 VAL A 42 GLU A 47 SITE 1 AC2 6 HOH A 12 ASP A 103 ASP A 105 SER A 107 SITE 2 AC2 6 MET A 109 GLU A 114 SITE 1 AC3 5 HOH A 15 HOH A 16 ASP A 128 ASP A 171 SITE 2 AC3 5 ASP A 173 CRYST1 71.266 170.209 46.911 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014032 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021317 0.00000