data_3AAL # _entry.id 3AAL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3AAL RCSB RCSB029018 WWPDB D_1000029018 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3AAM 'the same protein from Thermus thermophilus HB8' unspecified TargetDB gka001002474.1 . unspecified # _pdbx_database_status.entry_id 3AAL _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-11-20 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Asano, R.' 1 'Ishikawa, H.' 2 'Nakane, S.' 3 'Nakagawa, N.' 4 'Kuramitsu, S.' 5 'Masui, R.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 67 _citation.page_first 149 _citation.page_last 155 _citation.year 2011 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21358045 _citation.pdbx_database_id_DOI 10.1107/S0907444910052479 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Asano, R.' 1 primary 'Ishikawa, H.' 2 primary 'Nakane, S.' 3 primary 'Nakagawa, N.' 4 primary 'Kuramitsu, S.' 5 primary 'Masui, R.' 6 # _cell.length_a 85.170 _cell.length_b 85.170 _cell.length_c 140.220 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3AAL _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.entry_id 3AAL _symmetry.Int_Tables_number 178 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable endonuclease 4' 33507.898 1 3.1.21.2 ? ? ? 2 non-polymer syn 'CACODYLATE ION' 136.989 1 ? ? ? ? 3 non-polymer syn 'FE (III) ION' 55.845 2 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 water nat water 18.015 110 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'EndoIV, Endonuclease IV, Endodeoxyribonuclease IV' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GLNHMLKIGSHVSMSGKKMLLAASEEAASYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIEEIVVHAPYIINI GNTTNLDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAGVEAGLRQIIRGLNEVLTREQNVQIALETMAGKGSECGR TFEELAYIIDGVAYNDKLSVCFDTCHTHDAGYDIVNDFDGVLEEFDRIIGLGRLKVLHINDSKNPRGSRKDRHENIGFGH IGFAALNYIVHHPQLEDIPKILETPYVGEDKNNKKPPYKHEIAMLRAQSFDDQLLEKINAGAE ; _entity_poly.pdbx_seq_one_letter_code_can ;GLNHMLKIGSHVSMSGKKMLLAASEEAASYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIEEIVVHAPYIINI GNTTNLDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAGVEAGLRQIIRGLNEVLTREQNVQIALETMAGKGSECGR TFEELAYIIDGVAYNDKLSVCFDTCHTHDAGYDIVNDFDGVLEEFDRIIGLGRLKVLHINDSKNPRGSRKDRHENIGFGH IGFAALNYIVHHPQLEDIPKILETPYVGEDKNNKKPPYKHEIAMLRAQSFDDQLLEKINAGAE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier gka001002474.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 ASN n 1 4 HIS n 1 5 MET n 1 6 LEU n 1 7 LYS n 1 8 ILE n 1 9 GLY n 1 10 SER n 1 11 HIS n 1 12 VAL n 1 13 SER n 1 14 MET n 1 15 SER n 1 16 GLY n 1 17 LYS n 1 18 LYS n 1 19 MET n 1 20 LEU n 1 21 LEU n 1 22 ALA n 1 23 ALA n 1 24 SER n 1 25 GLU n 1 26 GLU n 1 27 ALA n 1 28 ALA n 1 29 SER n 1 30 TYR n 1 31 GLY n 1 32 ALA n 1 33 ASN n 1 34 THR n 1 35 PHE n 1 36 MET n 1 37 ILE n 1 38 TYR n 1 39 THR n 1 40 GLY n 1 41 ALA n 1 42 PRO n 1 43 GLN n 1 44 ASN n 1 45 THR n 1 46 LYS n 1 47 ARG n 1 48 LYS n 1 49 SER n 1 50 ILE n 1 51 GLU n 1 52 GLU n 1 53 LEU n 1 54 ASN n 1 55 ILE n 1 56 GLU n 1 57 ALA n 1 58 GLY n 1 59 ARG n 1 60 GLN n 1 61 HIS n 1 62 MET n 1 63 GLN n 1 64 ALA n 1 65 HIS n 1 66 GLY n 1 67 ILE n 1 68 GLU n 1 69 GLU n 1 70 ILE n 1 71 VAL n 1 72 VAL n 1 73 HIS n 1 74 ALA n 1 75 PRO n 1 76 TYR n 1 77 ILE n 1 78 ILE n 1 79 ASN n 1 80 ILE n 1 81 GLY n 1 82 ASN n 1 83 THR n 1 84 THR n 1 85 ASN n 1 86 LEU n 1 87 ASP n 1 88 THR n 1 89 PHE n 1 90 SER n 1 91 LEU n 1 92 GLY n 1 93 VAL n 1 94 ASP n 1 95 PHE n 1 96 LEU n 1 97 ARG n 1 98 ALA n 1 99 GLU n 1 100 ILE n 1 101 GLU n 1 102 ARG n 1 103 THR n 1 104 GLU n 1 105 ALA n 1 106 ILE n 1 107 GLY n 1 108 ALA n 1 109 LYS n 1 110 GLN n 1 111 LEU n 1 112 VAL n 1 113 LEU n 1 114 HIS n 1 115 PRO n 1 116 GLY n 1 117 ALA n 1 118 HIS n 1 119 VAL n 1 120 GLY n 1 121 ALA n 1 122 GLY n 1 123 VAL n 1 124 GLU n 1 125 ALA n 1 126 GLY n 1 127 LEU n 1 128 ARG n 1 129 GLN n 1 130 ILE n 1 131 ILE n 1 132 ARG n 1 133 GLY n 1 134 LEU n 1 135 ASN n 1 136 GLU n 1 137 VAL n 1 138 LEU n 1 139 THR n 1 140 ARG n 1 141 GLU n 1 142 GLN n 1 143 ASN n 1 144 VAL n 1 145 GLN n 1 146 ILE n 1 147 ALA n 1 148 LEU n 1 149 GLU n 1 150 THR n 1 151 MET n 1 152 ALA n 1 153 GLY n 1 154 LYS n 1 155 GLY n 1 156 SER n 1 157 GLU n 1 158 CYS n 1 159 GLY n 1 160 ARG n 1 161 THR n 1 162 PHE n 1 163 GLU n 1 164 GLU n 1 165 LEU n 1 166 ALA n 1 167 TYR n 1 168 ILE n 1 169 ILE n 1 170 ASP n 1 171 GLY n 1 172 VAL n 1 173 ALA n 1 174 TYR n 1 175 ASN n 1 176 ASP n 1 177 LYS n 1 178 LEU n 1 179 SER n 1 180 VAL n 1 181 CYS n 1 182 PHE n 1 183 ASP n 1 184 THR n 1 185 CYS n 1 186 HIS n 1 187 THR n 1 188 HIS n 1 189 ASP n 1 190 ALA n 1 191 GLY n 1 192 TYR n 1 193 ASP n 1 194 ILE n 1 195 VAL n 1 196 ASN n 1 197 ASP n 1 198 PHE n 1 199 ASP n 1 200 GLY n 1 201 VAL n 1 202 LEU n 1 203 GLU n 1 204 GLU n 1 205 PHE n 1 206 ASP n 1 207 ARG n 1 208 ILE n 1 209 ILE n 1 210 GLY n 1 211 LEU n 1 212 GLY n 1 213 ARG n 1 214 LEU n 1 215 LYS n 1 216 VAL n 1 217 LEU n 1 218 HIS n 1 219 ILE n 1 220 ASN n 1 221 ASP n 1 222 SER n 1 223 LYS n 1 224 ASN n 1 225 PRO n 1 226 ARG n 1 227 GLY n 1 228 SER n 1 229 ARG n 1 230 LYS n 1 231 ASP n 1 232 ARG n 1 233 HIS n 1 234 GLU n 1 235 ASN n 1 236 ILE n 1 237 GLY n 1 238 PHE n 1 239 GLY n 1 240 HIS n 1 241 ILE n 1 242 GLY n 1 243 PHE n 1 244 ALA n 1 245 ALA n 1 246 LEU n 1 247 ASN n 1 248 TYR n 1 249 ILE n 1 250 VAL n 1 251 HIS n 1 252 HIS n 1 253 PRO n 1 254 GLN n 1 255 LEU n 1 256 GLU n 1 257 ASP n 1 258 ILE n 1 259 PRO n 1 260 LYS n 1 261 ILE n 1 262 LEU n 1 263 GLU n 1 264 THR n 1 265 PRO n 1 266 TYR n 1 267 VAL n 1 268 GLY n 1 269 GLU n 1 270 ASP n 1 271 LYS n 1 272 ASN n 1 273 ASN n 1 274 LYS n 1 275 LYS n 1 276 PRO n 1 277 PRO n 1 278 TYR n 1 279 LYS n 1 280 HIS n 1 281 GLU n 1 282 ILE n 1 283 ALA n 1 284 MET n 1 285 LEU n 1 286 ARG n 1 287 ALA n 1 288 GLN n 1 289 SER n 1 290 PHE n 1 291 ASP n 1 292 ASP n 1 293 GLN n 1 294 LEU n 1 295 LEU n 1 296 GLU n 1 297 LYS n 1 298 ILE n 1 299 ASN n 1 300 ALA n 1 301 GLY n 1 302 ALA n 1 303 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GK2474 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus kaustophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1462 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta2(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code END4_GEOKA _struct_ref.pdbx_db_accession Q5KX27 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLKIGSHVSMSGKKMLLAASEEAASYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIEEIVVHAPYIINIGNTT NLDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAGVEAGLRQIIRGLNEVLTREQNVQIALETMAGKGSECGRTFEE LAYIIDGVAYNDKLSVCFDTCHTHDAGYDIVNDFDGVLEEFDRIIGLGRLKVLHINDSKNPRGSRKDRHENIGFGHIGFA ALNYIVHHPQLEDIPKILETPYVGEDKNNKKPPYKHEIAMLRAQSFDDQLLEKINAGAE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3AAL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 303 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5KX27 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 299 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 299 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3AAL GLY A 1 ? UNP Q5KX27 ? ? 'EXPRESSION TAG' -3 1 1 3AAL LEU A 2 ? UNP Q5KX27 ? ? 'EXPRESSION TAG' -2 2 1 3AAL ASN A 3 ? UNP Q5KX27 ? ? 'EXPRESSION TAG' -1 3 1 3AAL HIS A 4 ? UNP Q5KX27 ? ? 'EXPRESSION TAG' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CAC non-polymer . 'CACODYLATE ION' dimethylarsinate 'C2 H6 As O2 -1' 136.989 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3AAL _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.518 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 43.85 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.1M cacodylate, 30% polyethylene glycol 600, 1M NaCl, 10% glycerol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2007-09-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'transparent diamond double crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_wavelength_list 1.000000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 # _reflns.entry_id 3AAL _reflns.d_resolution_high 1.600 _reflns.d_resolution_low 50.000 _reflns.number_obs 40267 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_netI_over_sigmaI 64.904 _reflns.pdbx_chi_squared 1.315 _reflns.pdbx_redundancy 14.900 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.60 1.66 ? ? ? 0.216 ? ? 0.779 6.60 ? 3860 97.60 1 1 1.66 1.72 ? ? ? 0.180 ? ? 0.806 8.70 ? 3931 100.00 2 1 1.72 1.80 ? ? ? 0.142 ? ? 0.947 12.10 ? 3971 100.00 3 1 1.80 1.90 ? ? ? 0.102 ? ? 0.941 16.60 ? 3965 100.00 4 1 1.90 2.02 ? ? ? 0.074 ? ? 0.974 16.80 ? 3983 100.00 5 1 2.02 2.17 ? ? ? 0.055 ? ? 1.047 16.80 ? 4007 100.00 6 1 2.17 2.39 ? ? ? 0.047 ? ? 1.154 16.90 ? 4022 100.00 7 1 2.39 2.74 ? ? ? 0.043 ? ? 1.297 17.40 ? 4061 100.00 8 1 2.74 3.45 ? ? ? 0.047 ? ? 1.988 18.70 ? 4115 100.00 9 1 3.45 50.00 ? ? ? 0.043 ? ? 2.250 17.60 ? 4352 99.40 10 1 # _refine.entry_id 3AAL _refine.ls_d_res_high 1.600 _refine.ls_d_res_low 23.420 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF 188228.000 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 97.300 _refine.ls_number_reflns_obs 39270 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.197 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.222 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.100 _refine.ls_number_reflns_R_free 3948 _refine.ls_R_factor_R_free_error 0.004 _refine.B_iso_mean 17.605 _refine.solvent_model_param_bsol 38.531 _refine.solvent_model_param_ksol 0.387 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] -0.490 _refine.aniso_B[2][2] -0.490 _refine.aniso_B[3][3] 0.990 _refine.aniso_B[1][2] -0.270 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1XP3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 58.07 _refine.B_iso_min 7.54 _refine.occupancy_max 1.00 _refine.occupancy_min 0.67 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3AAL _refine_analyze.Luzzati_coordinate_error_obs 0.170 _refine_analyze.Luzzati_sigma_a_obs -0.060 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.200 _refine_analyze.Luzzati_sigma_a_free 0.030 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2316 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 2434 _refine_hist.d_res_high 1.600 _refine_hist.d_res_low 23.420 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.013 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.600 ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? 23.500 ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? 1.520 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 1.150 1.500 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 1.710 2.000 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 2.390 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 3.350 2.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.700 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 92.700 _refine_ls_shell.number_reflns_R_work 5497 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.187 _refine_ls_shell.R_factor_R_free 0.220 _refine_ls_shell.percent_reflns_R_free 9.600 _refine_ls_shell.number_reflns_R_free 587 _refine_ls_shell.R_factor_R_free_error 0.009 _refine_ls_shell.number_reflns_all 6084 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 ion.param ion.top 'X-RAY DIFFRACTION' 3 water.param water.top 'X-RAY DIFFRACTION' 4 cac_xplor.param cac_xplor.top # _struct.entry_id 3AAL _struct.title 'Crystal Structure of endonuclease IV from Geobacillus kaustophilus' _struct.pdbx_descriptor 'Probable endonuclease 4 (E.C.3.1.21.2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3AAL _struct_keywords.text ;EndoIV, DNA repair, base excision repair, TIM barrel, DNA damage, Endonuclease, Hydrolase, Metal-binding, Nuclease, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 19 ? TYR A 30 ? MET A 15 TYR A 26 1 ? 12 HELX_P HELX_P2 2 ILE A 50 ? LEU A 53 ? ILE A 46 LEU A 49 5 ? 4 HELX_P HELX_P3 3 ASN A 54 ? HIS A 65 ? ASN A 50 HIS A 61 1 ? 12 HELX_P HELX_P4 4 ASN A 85 ? GLY A 107 ? ASN A 81 GLY A 103 1 ? 23 HELX_P HELX_P5 5 GLY A 122 ? LEU A 138 ? GLY A 118 LEU A 134 1 ? 17 HELX_P HELX_P6 6 THR A 161 ? VAL A 172 ? THR A 157 VAL A 168 1 ? 12 HELX_P HELX_P7 7 TYR A 174 ? ASP A 176 ? TYR A 170 ASP A 172 5 ? 3 HELX_P HELX_P8 8 THR A 184 ? GLY A 191 ? THR A 180 GLY A 187 1 ? 8 HELX_P HELX_P9 9 ASP A 193 ? ILE A 209 ? ASP A 189 ILE A 205 1 ? 17 HELX_P HELX_P10 10 GLY A 210 ? GLY A 212 ? GLY A 206 GLY A 208 5 ? 3 HELX_P HELX_P11 11 GLY A 242 ? HIS A 251 ? GLY A 238 HIS A 247 1 ? 10 HELX_P HELX_P12 12 PRO A 277 ? GLN A 288 ? PRO A 273 GLN A 284 1 ? 12 HELX_P HELX_P13 13 GLN A 293 ? ASN A 299 ? GLN A 289 ASN A 295 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B CAC . O1 ? ? ? 1_555 E ZN . ZN ? ? A CAC 300 A ZN 303 1_555 ? ? ? ? ? ? ? 1.865 ? metalc2 metalc ? ? A HIS 186 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 182 A ZN 303 1_555 ? ? ? ? ? ? ? 2.037 ? metalc3 metalc ? ? B CAC . O2 ? ? ? 1_555 D FE . FE ? ? A CAC 300 A FE 302 1_555 ? ? ? ? ? ? ? 2.039 ? metalc4 metalc ? ? A HIS 114 NE2 ? ? ? 1_555 C FE . FE ? ? A HIS 110 A FE 301 1_555 ? ? ? ? ? ? ? 2.042 ? metalc5 metalc ? ? A ASP 231 OD2 ? ? ? 1_555 E ZN . ZN ? ? A ASP 227 A ZN 303 1_555 ? ? ? ? ? ? ? 2.047 ? metalc6 metalc ? ? A HIS 233 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 229 A ZN 303 1_555 ? ? ? ? ? ? ? 2.107 ? metalc7 metalc ? ? A ASP 183 OD1 ? ? ? 1_555 D FE . FE ? ? A ASP 179 A FE 302 1_555 ? ? ? ? ? ? ? 2.144 ? metalc8 metalc ? ? A GLU 149 OE2 ? ? ? 1_555 C FE . FE ? ? A GLU 145 A FE 301 1_555 ? ? ? ? ? ? ? 2.181 ? metalc9 metalc ? ? A GLU 149 OE1 ? ? ? 1_555 D FE . FE ? ? A GLU 145 A FE 302 1_555 ? ? ? ? ? ? ? 2.198 ? metalc10 metalc ? ? A HIS 73 NE2 ? ? ? 1_555 C FE . FE ? ? A HIS 69 A FE 301 1_555 ? ? ? ? ? ? ? 2.203 ? metalc11 metalc ? ? A GLU 263 OE1 ? ? ? 1_555 D FE . FE ? ? A GLU 259 A FE 302 1_555 ? ? ? ? ? ? ? 2.245 ? metalc12 metalc ? ? A HIS 218 ND1 ? ? ? 1_555 D FE . FE ? ? A HIS 214 A FE 302 1_555 ? ? ? ? ? ? ? 2.372 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 8 ? HIS A 11 ? ILE A 4 HIS A 7 A 2 THR A 34 ? TYR A 38 ? THR A 30 TYR A 34 A 3 GLU A 69 ? HIS A 73 ? GLU A 65 HIS A 69 A 4 GLN A 110 ? LEU A 113 ? GLN A 106 LEU A 109 A 5 GLN A 145 ? GLU A 149 ? GLN A 141 GLU A 145 A 6 LEU A 178 ? ASP A 183 ? LEU A 174 ASP A 179 A 7 LEU A 214 ? ILE A 219 ? LEU A 210 ILE A 215 A 8 LYS A 260 ? LEU A 262 ? LYS A 256 LEU A 258 A 9 ILE A 8 ? HIS A 11 ? ILE A 4 HIS A 7 B 1 GLY A 116 ? ALA A 117 ? GLY A 112 ALA A 113 B 2 GLU A 157 ? CYS A 158 ? GLU A 153 CYS A 154 C 1 ASP A 221 ? SER A 222 ? ASP A 217 SER A 218 C 2 HIS A 233 ? GLU A 234 ? HIS A 229 GLU A 230 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 10 ? N SER A 6 O MET A 36 ? O MET A 32 A 2 3 N ILE A 37 ? N ILE A 33 O VAL A 71 ? O VAL A 67 A 3 4 N VAL A 72 ? N VAL A 68 O VAL A 112 ? O VAL A 108 A 4 5 N LEU A 113 ? N LEU A 109 O GLU A 149 ? O GLU A 145 A 5 6 N ILE A 146 ? N ILE A 142 O SER A 179 ? O SER A 175 A 6 7 N PHE A 182 ? N PHE A 178 O HIS A 218 ? O HIS A 214 A 7 8 N LEU A 217 ? N LEU A 213 O ILE A 261 ? O ILE A 257 A 8 9 O LYS A 260 ? O LYS A 256 N GLY A 9 ? N GLY A 5 B 1 2 N GLY A 116 ? N GLY A 112 O CYS A 158 ? O CYS A 154 C 1 2 N ASP A 221 ? N ASP A 217 O GLU A 234 ? O GLU A 230 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE CAC A 300' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE FE A 301' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE FE A 302' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 HIS A 114 ? HIS A 110 . ? 1_555 ? 2 AC1 10 GLU A 149 ? GLU A 145 . ? 1_555 ? 3 AC1 10 ASP A 183 ? ASP A 179 . ? 1_555 ? 4 AC1 10 HIS A 186 ? HIS A 182 . ? 1_555 ? 5 AC1 10 ASP A 231 ? ASP A 227 . ? 1_555 ? 6 AC1 10 HIS A 233 ? HIS A 229 . ? 1_555 ? 7 AC1 10 GLU A 263 ? GLU A 259 . ? 1_555 ? 8 AC1 10 FE C . ? FE A 301 . ? 1_555 ? 9 AC1 10 FE D . ? FE A 302 . ? 1_555 ? 10 AC1 10 ZN E . ? ZN A 303 . ? 1_555 ? 11 AC2 5 HIS A 73 ? HIS A 69 . ? 1_555 ? 12 AC2 5 HIS A 114 ? HIS A 110 . ? 1_555 ? 13 AC2 5 GLU A 149 ? GLU A 145 . ? 1_555 ? 14 AC2 5 CAC B . ? CAC A 300 . ? 1_555 ? 15 AC2 5 FE D . ? FE A 302 . ? 1_555 ? 16 AC3 6 GLU A 149 ? GLU A 145 . ? 1_555 ? 17 AC3 6 ASP A 183 ? ASP A 179 . ? 1_555 ? 18 AC3 6 HIS A 218 ? HIS A 214 . ? 1_555 ? 19 AC3 6 GLU A 263 ? GLU A 259 . ? 1_555 ? 20 AC3 6 CAC B . ? CAC A 300 . ? 1_555 ? 21 AC3 6 FE C . ? FE A 301 . ? 1_555 ? 22 AC4 4 HIS A 186 ? HIS A 182 . ? 1_555 ? 23 AC4 4 ASP A 231 ? ASP A 227 . ? 1_555 ? 24 AC4 4 HIS A 233 ? HIS A 229 . ? 1_555 ? 25 AC4 4 CAC B . ? CAC A 300 . ? 1_555 ? # _database_PDB_matrix.entry_id 3AAL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3AAL _atom_sites.fract_transf_matrix[1][1] 0.011741 _atom_sites.fract_transf_matrix[1][2] 0.006779 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013558 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007132 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol AS C FE N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 LEU 2 -2 ? ? ? A . n A 1 3 ASN 3 -1 ? ? ? A . n A 1 4 HIS 4 0 ? ? ? A . n A 1 5 MET 5 1 ? ? ? A . n A 1 6 LEU 6 2 2 LEU LEU A . n A 1 7 LYS 7 3 3 LYS LYS A . n A 1 8 ILE 8 4 4 ILE ILE A . n A 1 9 GLY 9 5 5 GLY GLY A . n A 1 10 SER 10 6 6 SER SER A . n A 1 11 HIS 11 7 7 HIS HIS A . n A 1 12 VAL 12 8 8 VAL VAL A . n A 1 13 SER 13 9 9 SER SER A . n A 1 14 MET 14 10 10 MET MET A . n A 1 15 SER 15 11 11 SER SER A . n A 1 16 GLY 16 12 12 GLY GLY A . n A 1 17 LYS 17 13 13 LYS LYS A . n A 1 18 LYS 18 14 14 LYS LYS A . n A 1 19 MET 19 15 15 MET MET A . n A 1 20 LEU 20 16 16 LEU LEU A . n A 1 21 LEU 21 17 17 LEU LEU A . n A 1 22 ALA 22 18 18 ALA ALA A . n A 1 23 ALA 23 19 19 ALA ALA A . n A 1 24 SER 24 20 20 SER SER A . n A 1 25 GLU 25 21 21 GLU GLU A . n A 1 26 GLU 26 22 22 GLU GLU A . n A 1 27 ALA 27 23 23 ALA ALA A . n A 1 28 ALA 28 24 24 ALA ALA A . n A 1 29 SER 29 25 25 SER SER A . n A 1 30 TYR 30 26 26 TYR TYR A . n A 1 31 GLY 31 27 27 GLY GLY A . n A 1 32 ALA 32 28 28 ALA ALA A . n A 1 33 ASN 33 29 29 ASN ASN A . n A 1 34 THR 34 30 30 THR THR A . n A 1 35 PHE 35 31 31 PHE PHE A . n A 1 36 MET 36 32 32 MET MET A . n A 1 37 ILE 37 33 33 ILE ILE A . n A 1 38 TYR 38 34 34 TYR TYR A . n A 1 39 THR 39 35 35 THR THR A . n A 1 40 GLY 40 36 36 GLY GLY A . n A 1 41 ALA 41 37 37 ALA ALA A . n A 1 42 PRO 42 38 38 PRO PRO A . n A 1 43 GLN 43 39 39 GLN GLN A . n A 1 44 ASN 44 40 40 ASN ASN A . n A 1 45 THR 45 41 41 THR THR A . n A 1 46 LYS 46 42 42 LYS LYS A . n A 1 47 ARG 47 43 43 ARG ARG A . n A 1 48 LYS 48 44 44 LYS LYS A . n A 1 49 SER 49 45 45 SER SER A . n A 1 50 ILE 50 46 46 ILE ILE A . n A 1 51 GLU 51 47 47 GLU GLU A . n A 1 52 GLU 52 48 48 GLU GLU A . n A 1 53 LEU 53 49 49 LEU LEU A . n A 1 54 ASN 54 50 50 ASN ASN A . n A 1 55 ILE 55 51 51 ILE ILE A . n A 1 56 GLU 56 52 52 GLU GLU A . n A 1 57 ALA 57 53 53 ALA ALA A . n A 1 58 GLY 58 54 54 GLY GLY A . n A 1 59 ARG 59 55 55 ARG ARG A . n A 1 60 GLN 60 56 56 GLN GLN A . n A 1 61 HIS 61 57 57 HIS HIS A . n A 1 62 MET 62 58 58 MET MET A . n A 1 63 GLN 63 59 59 GLN GLN A . n A 1 64 ALA 64 60 60 ALA ALA A . n A 1 65 HIS 65 61 61 HIS HIS A . n A 1 66 GLY 66 62 62 GLY GLY A . n A 1 67 ILE 67 63 63 ILE ILE A . n A 1 68 GLU 68 64 64 GLU GLU A . n A 1 69 GLU 69 65 65 GLU GLU A . n A 1 70 ILE 70 66 66 ILE ILE A . n A 1 71 VAL 71 67 67 VAL VAL A . n A 1 72 VAL 72 68 68 VAL VAL A . n A 1 73 HIS 73 69 69 HIS HIS A . n A 1 74 ALA 74 70 70 ALA ALA A . n A 1 75 PRO 75 71 71 PRO PRO A . n A 1 76 TYR 76 72 72 TYR TYR A . n A 1 77 ILE 77 73 73 ILE ILE A . n A 1 78 ILE 78 74 74 ILE ILE A . n A 1 79 ASN 79 75 75 ASN ASN A . n A 1 80 ILE 80 76 76 ILE ILE A . n A 1 81 GLY 81 77 77 GLY GLY A . n A 1 82 ASN 82 78 78 ASN ASN A . n A 1 83 THR 83 79 79 THR THR A . n A 1 84 THR 84 80 80 THR THR A . n A 1 85 ASN 85 81 81 ASN ASN A . n A 1 86 LEU 86 82 82 LEU LEU A . n A 1 87 ASP 87 83 83 ASP ASP A . n A 1 88 THR 88 84 84 THR THR A . n A 1 89 PHE 89 85 85 PHE PHE A . n A 1 90 SER 90 86 86 SER SER A . n A 1 91 LEU 91 87 87 LEU LEU A . n A 1 92 GLY 92 88 88 GLY GLY A . n A 1 93 VAL 93 89 89 VAL VAL A . n A 1 94 ASP 94 90 90 ASP ASP A . n A 1 95 PHE 95 91 91 PHE PHE A . n A 1 96 LEU 96 92 92 LEU LEU A . n A 1 97 ARG 97 93 93 ARG ARG A . n A 1 98 ALA 98 94 94 ALA ALA A . n A 1 99 GLU 99 95 95 GLU GLU A . n A 1 100 ILE 100 96 96 ILE ILE A . n A 1 101 GLU 101 97 97 GLU GLU A . n A 1 102 ARG 102 98 98 ARG ARG A . n A 1 103 THR 103 99 99 THR THR A . n A 1 104 GLU 104 100 100 GLU GLU A . n A 1 105 ALA 105 101 101 ALA ALA A . n A 1 106 ILE 106 102 102 ILE ILE A . n A 1 107 GLY 107 103 103 GLY GLY A . n A 1 108 ALA 108 104 104 ALA ALA A . n A 1 109 LYS 109 105 105 LYS LYS A . n A 1 110 GLN 110 106 106 GLN GLN A . n A 1 111 LEU 111 107 107 LEU LEU A . n A 1 112 VAL 112 108 108 VAL VAL A . n A 1 113 LEU 113 109 109 LEU LEU A . n A 1 114 HIS 114 110 110 HIS HIS A . n A 1 115 PRO 115 111 111 PRO PRO A . n A 1 116 GLY 116 112 112 GLY GLY A . n A 1 117 ALA 117 113 113 ALA ALA A . n A 1 118 HIS 118 114 114 HIS HIS A . n A 1 119 VAL 119 115 115 VAL VAL A . n A 1 120 GLY 120 116 116 GLY GLY A . n A 1 121 ALA 121 117 117 ALA ALA A . n A 1 122 GLY 122 118 118 GLY GLY A . n A 1 123 VAL 123 119 119 VAL VAL A . n A 1 124 GLU 124 120 120 GLU GLU A . n A 1 125 ALA 125 121 121 ALA ALA A . n A 1 126 GLY 126 122 122 GLY GLY A . n A 1 127 LEU 127 123 123 LEU LEU A . n A 1 128 ARG 128 124 124 ARG ARG A . n A 1 129 GLN 129 125 125 GLN GLN A . n A 1 130 ILE 130 126 126 ILE ILE A . n A 1 131 ILE 131 127 127 ILE ILE A . n A 1 132 ARG 132 128 128 ARG ARG A . n A 1 133 GLY 133 129 129 GLY GLY A . n A 1 134 LEU 134 130 130 LEU LEU A . n A 1 135 ASN 135 131 131 ASN ASN A . n A 1 136 GLU 136 132 132 GLU GLU A . n A 1 137 VAL 137 133 133 VAL VAL A . n A 1 138 LEU 138 134 134 LEU LEU A . n A 1 139 THR 139 135 135 THR THR A . n A 1 140 ARG 140 136 136 ARG ARG A . n A 1 141 GLU 141 137 137 GLU GLU A . n A 1 142 GLN 142 138 138 GLN GLN A . n A 1 143 ASN 143 139 139 ASN ASN A . n A 1 144 VAL 144 140 140 VAL VAL A . n A 1 145 GLN 145 141 141 GLN GLN A . n A 1 146 ILE 146 142 142 ILE ILE A . n A 1 147 ALA 147 143 143 ALA ALA A . n A 1 148 LEU 148 144 144 LEU LEU A . n A 1 149 GLU 149 145 145 GLU GLU A . n A 1 150 THR 150 146 146 THR THR A . n A 1 151 MET 151 147 147 MET MET A . n A 1 152 ALA 152 148 148 ALA ALA A . n A 1 153 GLY 153 149 149 GLY GLY A . n A 1 154 LYS 154 150 150 LYS LYS A . n A 1 155 GLY 155 151 151 GLY GLY A . n A 1 156 SER 156 152 152 SER SER A . n A 1 157 GLU 157 153 153 GLU GLU A . n A 1 158 CYS 158 154 154 CYS CYS A . n A 1 159 GLY 159 155 155 GLY GLY A . n A 1 160 ARG 160 156 156 ARG ARG A . n A 1 161 THR 161 157 157 THR THR A . n A 1 162 PHE 162 158 158 PHE PHE A . n A 1 163 GLU 163 159 159 GLU GLU A . n A 1 164 GLU 164 160 160 GLU GLU A . n A 1 165 LEU 165 161 161 LEU LEU A . n A 1 166 ALA 166 162 162 ALA ALA A . n A 1 167 TYR 167 163 163 TYR TYR A . n A 1 168 ILE 168 164 164 ILE ILE A . n A 1 169 ILE 169 165 165 ILE ILE A . n A 1 170 ASP 170 166 166 ASP ASP A . n A 1 171 GLY 171 167 167 GLY GLY A . n A 1 172 VAL 172 168 168 VAL VAL A . n A 1 173 ALA 173 169 169 ALA ALA A . n A 1 174 TYR 174 170 170 TYR TYR A . n A 1 175 ASN 175 171 171 ASN ASN A . n A 1 176 ASP 176 172 172 ASP ASP A . n A 1 177 LYS 177 173 173 LYS LYS A . n A 1 178 LEU 178 174 174 LEU LEU A . n A 1 179 SER 179 175 175 SER SER A . n A 1 180 VAL 180 176 176 VAL VAL A . n A 1 181 CYS 181 177 177 CYS CYS A . n A 1 182 PHE 182 178 178 PHE PHE A . n A 1 183 ASP 183 179 179 ASP ASP A . n A 1 184 THR 184 180 180 THR THR A . n A 1 185 CYS 185 181 181 CYS CYS A . n A 1 186 HIS 186 182 182 HIS HIS A . n A 1 187 THR 187 183 183 THR THR A . n A 1 188 HIS 188 184 184 HIS HIS A . n A 1 189 ASP 189 185 185 ASP ASP A . n A 1 190 ALA 190 186 186 ALA ALA A . n A 1 191 GLY 191 187 187 GLY GLY A . n A 1 192 TYR 192 188 188 TYR TYR A . n A 1 193 ASP 193 189 189 ASP ASP A . n A 1 194 ILE 194 190 190 ILE ILE A . n A 1 195 VAL 195 191 191 VAL VAL A . n A 1 196 ASN 196 192 192 ASN ASN A . n A 1 197 ASP 197 193 193 ASP ASP A . n A 1 198 PHE 198 194 194 PHE PHE A . n A 1 199 ASP 199 195 195 ASP ASP A . n A 1 200 GLY 200 196 196 GLY GLY A . n A 1 201 VAL 201 197 197 VAL VAL A . n A 1 202 LEU 202 198 198 LEU LEU A . n A 1 203 GLU 203 199 199 GLU GLU A . n A 1 204 GLU 204 200 200 GLU GLU A . n A 1 205 PHE 205 201 201 PHE PHE A . n A 1 206 ASP 206 202 202 ASP ASP A . n A 1 207 ARG 207 203 203 ARG ARG A . n A 1 208 ILE 208 204 204 ILE ILE A . n A 1 209 ILE 209 205 205 ILE ILE A . n A 1 210 GLY 210 206 206 GLY GLY A . n A 1 211 LEU 211 207 207 LEU LEU A . n A 1 212 GLY 212 208 208 GLY GLY A . n A 1 213 ARG 213 209 209 ARG ARG A . n A 1 214 LEU 214 210 210 LEU LEU A . n A 1 215 LYS 215 211 211 LYS LYS A . n A 1 216 VAL 216 212 212 VAL VAL A . n A 1 217 LEU 217 213 213 LEU LEU A . n A 1 218 HIS 218 214 214 HIS HIS A . n A 1 219 ILE 219 215 215 ILE ILE A . n A 1 220 ASN 220 216 216 ASN ASN A . n A 1 221 ASP 221 217 217 ASP ASP A . n A 1 222 SER 222 218 218 SER SER A . n A 1 223 LYS 223 219 219 LYS LYS A . n A 1 224 ASN 224 220 220 ASN ASN A . n A 1 225 PRO 225 221 221 PRO PRO A . n A 1 226 ARG 226 222 222 ARG ARG A . n A 1 227 GLY 227 223 223 GLY GLY A . n A 1 228 SER 228 224 224 SER SER A . n A 1 229 ARG 229 225 225 ARG ARG A . n A 1 230 LYS 230 226 226 LYS LYS A . n A 1 231 ASP 231 227 227 ASP ASP A . n A 1 232 ARG 232 228 228 ARG ARG A . n A 1 233 HIS 233 229 229 HIS HIS A . n A 1 234 GLU 234 230 230 GLU GLU A . n A 1 235 ASN 235 231 231 ASN ASN A . n A 1 236 ILE 236 232 232 ILE ILE A . n A 1 237 GLY 237 233 233 GLY GLY A . n A 1 238 PHE 238 234 234 PHE PHE A . n A 1 239 GLY 239 235 235 GLY GLY A . n A 1 240 HIS 240 236 236 HIS HIS A . n A 1 241 ILE 241 237 237 ILE ILE A . n A 1 242 GLY 242 238 238 GLY GLY A . n A 1 243 PHE 243 239 239 PHE PHE A . n A 1 244 ALA 244 240 240 ALA ALA A . n A 1 245 ALA 245 241 241 ALA ALA A . n A 1 246 LEU 246 242 242 LEU LEU A . n A 1 247 ASN 247 243 243 ASN ASN A . n A 1 248 TYR 248 244 244 TYR TYR A . n A 1 249 ILE 249 245 245 ILE ILE A . n A 1 250 VAL 250 246 246 VAL VAL A . n A 1 251 HIS 251 247 247 HIS HIS A . n A 1 252 HIS 252 248 248 HIS HIS A . n A 1 253 PRO 253 249 249 PRO PRO A . n A 1 254 GLN 254 250 250 GLN GLN A . n A 1 255 LEU 255 251 251 LEU LEU A . n A 1 256 GLU 256 252 252 GLU GLU A . n A 1 257 ASP 257 253 253 ASP ASP A . n A 1 258 ILE 258 254 254 ILE ILE A . n A 1 259 PRO 259 255 255 PRO PRO A . n A 1 260 LYS 260 256 256 LYS LYS A . n A 1 261 ILE 261 257 257 ILE ILE A . n A 1 262 LEU 262 258 258 LEU LEU A . n A 1 263 GLU 263 259 259 GLU GLU A . n A 1 264 THR 264 260 260 THR THR A . n A 1 265 PRO 265 261 261 PRO PRO A . n A 1 266 TYR 266 262 262 TYR TYR A . n A 1 267 VAL 267 263 263 VAL VAL A . n A 1 268 GLY 268 264 264 GLY GLY A . n A 1 269 GLU 269 265 265 GLU GLU A . n A 1 270 ASP 270 266 266 ASP ASP A . n A 1 271 LYS 271 267 267 LYS LYS A . n A 1 272 ASN 272 268 268 ASN ASN A . n A 1 273 ASN 273 269 269 ASN ASN A . n A 1 274 LYS 274 270 270 LYS LYS A . n A 1 275 LYS 275 271 271 LYS LYS A . n A 1 276 PRO 276 272 272 PRO PRO A . n A 1 277 PRO 277 273 273 PRO PRO A . n A 1 278 TYR 278 274 274 TYR TYR A . n A 1 279 LYS 279 275 275 LYS LYS A . n A 1 280 HIS 280 276 276 HIS HIS A . n A 1 281 GLU 281 277 277 GLU GLU A . n A 1 282 ILE 282 278 278 ILE ILE A . n A 1 283 ALA 283 279 279 ALA ALA A . n A 1 284 MET 284 280 280 MET MET A . n A 1 285 LEU 285 281 281 LEU LEU A . n A 1 286 ARG 286 282 282 ARG ARG A . n A 1 287 ALA 287 283 283 ALA ALA A . n A 1 288 GLN 288 284 284 GLN GLN A . n A 1 289 SER 289 285 285 SER SER A . n A 1 290 PHE 290 286 286 PHE PHE A . n A 1 291 ASP 291 287 287 ASP ASP A . n A 1 292 ASP 292 288 288 ASP ASP A . n A 1 293 GLN 293 289 289 GLN GLN A . n A 1 294 LEU 294 290 290 LEU LEU A . n A 1 295 LEU 295 291 291 LEU LEU A . n A 1 296 GLU 296 292 292 GLU GLU A . n A 1 297 LYS 297 293 293 LYS LYS A . n A 1 298 ILE 298 294 294 ILE ILE A . n A 1 299 ASN 299 295 295 ASN ASN A . n A 1 300 ALA 300 296 296 ALA ALA A . n A 1 301 GLY 301 297 297 GLY GLY A . n A 1 302 ALA 302 298 298 ALA ALA A . n A 1 303 GLU 303 299 299 GLU GLU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CAC 1 300 300 CAC CAC A . C 3 FE 1 301 301 FE FE A . D 3 FE 1 302 302 FE FE A . E 4 ZN 1 303 303 ZN ZN A . F 5 HOH 1 304 1 HOH HOH A . F 5 HOH 2 305 2 HOH HOH A . F 5 HOH 3 306 3 HOH HOH A . F 5 HOH 4 307 4 HOH HOH A . F 5 HOH 5 308 5 HOH HOH A . F 5 HOH 6 309 6 HOH HOH A . F 5 HOH 7 310 7 HOH HOH A . F 5 HOH 8 311 8 HOH HOH A . F 5 HOH 9 312 9 HOH HOH A . F 5 HOH 10 313 10 HOH HOH A . F 5 HOH 11 314 11 HOH HOH A . F 5 HOH 12 315 12 HOH HOH A . F 5 HOH 13 316 13 HOH HOH A . F 5 HOH 14 317 14 HOH HOH A . F 5 HOH 15 318 15 HOH HOH A . F 5 HOH 16 319 16 HOH HOH A . F 5 HOH 17 320 17 HOH HOH A . F 5 HOH 18 321 18 HOH HOH A . F 5 HOH 19 322 19 HOH HOH A . F 5 HOH 20 323 20 HOH HOH A . F 5 HOH 21 324 21 HOH HOH A . F 5 HOH 22 325 22 HOH HOH A . F 5 HOH 23 326 23 HOH HOH A . F 5 HOH 24 327 24 HOH HOH A . F 5 HOH 25 328 25 HOH HOH A . F 5 HOH 26 329 26 HOH HOH A . F 5 HOH 27 330 27 HOH HOH A . F 5 HOH 28 331 28 HOH HOH A . F 5 HOH 29 332 29 HOH HOH A . F 5 HOH 30 333 30 HOH HOH A . F 5 HOH 31 334 31 HOH HOH A . F 5 HOH 32 335 32 HOH HOH A . F 5 HOH 33 336 33 HOH HOH A . F 5 HOH 34 337 34 HOH HOH A . F 5 HOH 35 338 35 HOH HOH A . F 5 HOH 36 339 36 HOH HOH A . F 5 HOH 37 340 37 HOH HOH A . F 5 HOH 38 341 38 HOH HOH A . F 5 HOH 39 342 39 HOH HOH A . F 5 HOH 40 343 40 HOH HOH A . F 5 HOH 41 344 41 HOH HOH A . F 5 HOH 42 345 43 HOH HOH A . F 5 HOH 43 346 44 HOH HOH A . F 5 HOH 44 347 45 HOH HOH A . F 5 HOH 45 348 46 HOH HOH A . F 5 HOH 46 349 47 HOH HOH A . F 5 HOH 47 350 48 HOH HOH A . F 5 HOH 48 351 49 HOH HOH A . F 5 HOH 49 352 50 HOH HOH A . F 5 HOH 50 353 51 HOH HOH A . F 5 HOH 51 354 52 HOH HOH A . F 5 HOH 52 355 53 HOH HOH A . F 5 HOH 53 356 54 HOH HOH A . F 5 HOH 54 357 56 HOH HOH A . F 5 HOH 55 358 57 HOH HOH A . F 5 HOH 56 359 58 HOH HOH A . F 5 HOH 57 360 59 HOH HOH A . F 5 HOH 58 361 60 HOH HOH A . F 5 HOH 59 362 61 HOH HOH A . F 5 HOH 60 363 62 HOH HOH A . F 5 HOH 61 364 63 HOH HOH A . F 5 HOH 62 365 64 HOH HOH A . F 5 HOH 63 366 65 HOH HOH A . F 5 HOH 64 367 66 HOH HOH A . F 5 HOH 65 368 67 HOH HOH A . F 5 HOH 66 369 68 HOH HOH A . F 5 HOH 67 370 69 HOH HOH A . F 5 HOH 68 371 70 HOH HOH A . F 5 HOH 69 372 71 HOH HOH A . F 5 HOH 70 373 72 HOH HOH A . F 5 HOH 71 374 73 HOH HOH A . F 5 HOH 72 375 75 HOH HOH A . F 5 HOH 73 376 76 HOH HOH A . F 5 HOH 74 377 77 HOH HOH A . F 5 HOH 75 378 78 HOH HOH A . F 5 HOH 76 379 79 HOH HOH A . F 5 HOH 77 380 80 HOH HOH A . F 5 HOH 78 381 81 HOH HOH A . F 5 HOH 79 382 82 HOH HOH A . F 5 HOH 80 383 83 HOH HOH A . F 5 HOH 81 384 84 HOH HOH A . F 5 HOH 82 385 85 HOH HOH A . F 5 HOH 83 386 86 HOH HOH A . F 5 HOH 84 387 87 HOH HOH A . F 5 HOH 85 388 88 HOH HOH A . F 5 HOH 86 389 89 HOH HOH A . F 5 HOH 87 390 90 HOH HOH A . F 5 HOH 88 391 91 HOH HOH A . F 5 HOH 89 392 92 HOH HOH A . F 5 HOH 90 393 93 HOH HOH A . F 5 HOH 91 394 94 HOH HOH A . F 5 HOH 92 395 95 HOH HOH A . F 5 HOH 93 396 96 HOH HOH A . F 5 HOH 94 397 97 HOH HOH A . F 5 HOH 95 398 98 HOH HOH A . F 5 HOH 96 399 99 HOH HOH A . F 5 HOH 97 400 100 HOH HOH A . F 5 HOH 98 401 101 HOH HOH A . F 5 HOH 99 402 102 HOH HOH A . F 5 HOH 100 403 104 HOH HOH A . F 5 HOH 101 404 105 HOH HOH A . F 5 HOH 102 405 106 HOH HOH A . F 5 HOH 103 406 107 HOH HOH A . F 5 HOH 104 407 108 HOH HOH A . F 5 HOH 105 408 110 HOH HOH A . F 5 HOH 106 409 111 HOH HOH A . F 5 HOH 107 410 112 HOH HOH A . F 5 HOH 108 411 114 HOH HOH A . F 5 HOH 109 412 115 HOH HOH A . F 5 HOH 110 413 116 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? B CAC . ? A CAC 300 ? 1_555 ZN ? E ZN . ? A ZN 303 ? 1_555 NE2 ? A HIS 186 ? A HIS 182 ? 1_555 116.4 ? 2 O1 ? B CAC . ? A CAC 300 ? 1_555 ZN ? E ZN . ? A ZN 303 ? 1_555 OD2 ? A ASP 231 ? A ASP 227 ? 1_555 118.3 ? 3 NE2 ? A HIS 186 ? A HIS 182 ? 1_555 ZN ? E ZN . ? A ZN 303 ? 1_555 OD2 ? A ASP 231 ? A ASP 227 ? 1_555 96.5 ? 4 O1 ? B CAC . ? A CAC 300 ? 1_555 ZN ? E ZN . ? A ZN 303 ? 1_555 NE2 ? A HIS 233 ? A HIS 229 ? 1_555 103.9 ? 5 NE2 ? A HIS 186 ? A HIS 182 ? 1_555 ZN ? E ZN . ? A ZN 303 ? 1_555 NE2 ? A HIS 233 ? A HIS 229 ? 1_555 123.6 ? 6 OD2 ? A ASP 231 ? A ASP 227 ? 1_555 ZN ? E ZN . ? A ZN 303 ? 1_555 NE2 ? A HIS 233 ? A HIS 229 ? 1_555 97.3 ? 7 O2 ? B CAC . ? A CAC 300 ? 1_555 FE ? D FE . ? A FE 302 ? 1_555 OD1 ? A ASP 183 ? A ASP 179 ? 1_555 84.3 ? 8 O2 ? B CAC . ? A CAC 300 ? 1_555 FE ? D FE . ? A FE 302 ? 1_555 OE1 ? A GLU 149 ? A GLU 145 ? 1_555 109.6 ? 9 OD1 ? A ASP 183 ? A ASP 179 ? 1_555 FE ? D FE . ? A FE 302 ? 1_555 OE1 ? A GLU 149 ? A GLU 145 ? 1_555 90.6 ? 10 O2 ? B CAC . ? A CAC 300 ? 1_555 FE ? D FE . ? A FE 302 ? 1_555 OE1 ? A GLU 263 ? A GLU 259 ? 1_555 82.6 ? 11 OD1 ? A ASP 183 ? A ASP 179 ? 1_555 FE ? D FE . ? A FE 302 ? 1_555 OE1 ? A GLU 263 ? A GLU 259 ? 1_555 86.2 ? 12 OE1 ? A GLU 149 ? A GLU 145 ? 1_555 FE ? D FE . ? A FE 302 ? 1_555 OE1 ? A GLU 263 ? A GLU 259 ? 1_555 167.0 ? 13 O2 ? B CAC . ? A CAC 300 ? 1_555 FE ? D FE . ? A FE 302 ? 1_555 ND1 ? A HIS 218 ? A HIS 214 ? 1_555 161.7 ? 14 OD1 ? A ASP 183 ? A ASP 179 ? 1_555 FE ? D FE . ? A FE 302 ? 1_555 ND1 ? A HIS 218 ? A HIS 214 ? 1_555 102.8 ? 15 OE1 ? A GLU 149 ? A GLU 145 ? 1_555 FE ? D FE . ? A FE 302 ? 1_555 ND1 ? A HIS 218 ? A HIS 214 ? 1_555 87.3 ? 16 OE1 ? A GLU 263 ? A GLU 259 ? 1_555 FE ? D FE . ? A FE 302 ? 1_555 ND1 ? A HIS 218 ? A HIS 214 ? 1_555 81.2 ? 17 NE2 ? A HIS 114 ? A HIS 110 ? 1_555 FE ? C FE . ? A FE 301 ? 1_555 OE2 ? A GLU 149 ? A GLU 145 ? 1_555 89.5 ? 18 NE2 ? A HIS 114 ? A HIS 110 ? 1_555 FE ? C FE . ? A FE 301 ? 1_555 NE2 ? A HIS 73 ? A HIS 69 ? 1_555 98.5 ? 19 OE2 ? A GLU 149 ? A GLU 145 ? 1_555 FE ? C FE . ? A FE 301 ? 1_555 NE2 ? A HIS 73 ? A HIS 69 ? 1_555 95.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-05-02 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 CNS 1.1 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 BSS . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 C1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CAC _pdbx_validate_close_contact.auth_seq_id_1 300 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 FE _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 FE _pdbx_validate_close_contact.auth_seq_id_2 301 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.09 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 98 ? ? CZ A ARG 98 ? ? NH1 A ARG 98 ? ? 123.69 120.30 3.39 0.50 N 2 1 NE A ARG 98 ? ? CZ A ARG 98 ? ? NH2 A ARG 98 ? ? 116.23 120.30 -4.07 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 15 ? ? 45.91 -115.58 2 1 ASP A 193 ? ? -151.74 59.37 3 1 ASP A 227 ? ? 60.69 60.81 4 1 ALA A 296 ? ? -149.70 -22.95 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A LEU -2 ? A LEU 2 3 1 Y 1 A ASN -1 ? A ASN 3 4 1 Y 1 A HIS 0 ? A HIS 4 5 1 Y 1 A MET 1 ? A MET 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CACODYLATE ION' CAC 3 'FE (III) ION' FE 4 'ZINC ION' ZN 5 water HOH #