HEADER HYDROLASE 26-NOV-09 3AAV TITLE BOVINE BETA-TRYPSIN BOUND TO META-DIAMIDINO SCHIFF BASE COPPER (II) TITLE 2 CHELATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATIONIC TRYPSIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-TRYPSIN; COMPND 5 EC: 3.4.21.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS ENZYME-INHIBITOR COMPLEX, COORDINATION METAL BASED INHIBITOR, KEYWDS 2 HYDROLASE, CALCIUM, DIGESTION, METAL-BINDING, PROTEASE, SECRETED, KEYWDS 3 SERINE PROTEASE, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR D.IYAGUCHI,S.KAWANO,E.TOYOTA REVDAT 2 01-NOV-23 3AAV 1 REMARK LINK REVDAT 1 07-APR-10 3AAV 0 JRNL AUTH D.IYAGUCHI,S.KAWANO,K.TAKADA,E.TOYOTA JRNL TITL STRUCTURAL BASIS FOR THE DESIGN OF NOVEL SCHIFF BASE METAL JRNL TITL 2 CHELATE INHIBITORS OF TRYPSIN JRNL REF BIOORG.MED.CHEM. V. 18 2076 2010 JRNL REFN ISSN 0968-0896 JRNL PMID 20202854 JRNL DOI 10.1016/J.BMC.2010.02.016 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 39220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3913 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AAV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000029027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.21300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1G3D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.74500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.49000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CU CU A 3001 O HOH A 400 1.16 REMARK 500 OAP A2C A 1001 CU CU A 3001 1.41 REMARK 500 CU CU B 3002 O HOH B 401 1.49 REMARK 500 OAP A2C B 1002 CU CU B 3002 1.55 REMARK 500 OG SER B 177 CAW A2C B 1002 1.55 REMARK 500 OG SER A 177 CAW A2C A 1001 1.61 REMARK 500 CB SER B 177 CAW A2C B 1002 1.68 REMARK 500 CB SER A 177 CAW A2C A 1001 1.70 REMARK 500 OG SER B 177 CAX A2C B 1002 1.83 REMARK 500 OG SER A 177 CAX A2C A 1001 1.85 REMARK 500 OAP A2C B 1002 O HOH B 401 1.85 REMARK 500 O GLY A 196 NAJ A2C A 1001 1.94 REMARK 500 O GLY B 196 NAJ A2C B 1002 1.95 REMARK 500 N SER A 177 CAX A2C A 1001 1.98 REMARK 500 N SER B 177 CAX A2C B 1002 2.00 REMARK 500 OAP A2C A 1001 O HOH A 400 2.06 REMARK 500 O HOH A 400 O HOH A 402 2.13 REMARK 500 OG SER A 177 NAY A2C A 1001 2.14 REMARK 500 N SER A 177 CAW A2C A 1001 2.17 REMARK 500 N SER B 177 CAW A2C B 1002 2.17 REMARK 500 OG SER B 177 NAY A2C B 1002 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NAK A2C B 1002 O HOH A 358 2765 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 132 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 PRO B 132 C - N - CA ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 -81.18 -131.10 REMARK 500 ASP A 133 -40.20 84.77 REMARK 500 ASP B 53 -82.60 -129.40 REMARK 500 ASP B 133 -51.83 77.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE1 REMARK 620 2 ASN A 54 O 92.2 REMARK 620 3 VAL A 57 O 166.4 81.6 REMARK 620 4 GLU A 62 OE2 103.6 159.6 85.5 REMARK 620 5 HOH A 227 O 87.5 89.2 104.4 78.8 REMARK 620 6 HOH A 291 O 79.5 102.0 89.9 93.6 163.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A3001 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 177 OG REMARK 620 2 HOH A 402 O 158.0 REMARK 620 3 A2C A1001 OAO 66.9 95.8 REMARK 620 4 A2C A1001 NAV 56.7 103.7 61.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 52 OE1 REMARK 620 2 ASN B 54 O 93.3 REMARK 620 3 VAL B 57 O 165.8 81.2 REMARK 620 4 GLU B 62 OE2 102.8 158.4 86.1 REMARK 620 5 HOH B 224 O 78.5 101.8 89.8 95.5 REMARK 620 6 HOH B 229 O 86.8 91.0 106.2 75.8 161.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B3002 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 177 OG REMARK 620 2 A2C B1002 OAO 73.9 REMARK 620 3 A2C B1002 NAV 65.9 70.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A2C A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A2C B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 3002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AAS RELATED DB: PDB REMARK 900 RELATED ID: 3AAU RELATED DB: PDB DBREF 3AAV A 1 223 UNP P00760 TRY1_BOVIN 24 246 DBREF 3AAV B 1 223 UNP P00760 TRY1_BOVIN 24 246 SEQRES 1 A 223 ILE VAL GLY GLY TYR THR CYS GLY ALA ASN THR VAL PRO SEQRES 2 A 223 TYR GLN VAL SER LEU ASN SER GLY TYR HIS PHE CYS GLY SEQRES 3 A 223 GLY SER LEU ILE ASN SER GLN TRP VAL VAL SER ALA ALA SEQRES 4 A 223 HIS CYS TYR LYS SER GLY ILE GLN VAL ARG LEU GLY GLU SEQRES 5 A 223 ASP ASN ILE ASN VAL VAL GLU GLY ASN GLU GLN PHE ILE SEQRES 6 A 223 SER ALA SER LYS SER ILE VAL HIS PRO SER TYR ASN SER SEQRES 7 A 223 ASN THR LEU ASN ASN ASP ILE MET LEU ILE LYS LEU LYS SEQRES 8 A 223 SER ALA ALA SER LEU ASN SER ARG VAL ALA SER ILE SER SEQRES 9 A 223 LEU PRO THR SER CYS ALA SER ALA GLY THR GLN CYS LEU SEQRES 10 A 223 ILE SER GLY TRP GLY ASN THR LYS SER SER GLY THR SER SEQRES 11 A 223 TYR PRO ASP VAL LEU LYS CYS LEU LYS ALA PRO ILE LEU SEQRES 12 A 223 SER ASP SER SER CYS LYS SER ALA TYR PRO GLY GLN ILE SEQRES 13 A 223 THR SER ASN MET PHE CYS ALA GLY TYR LEU GLU GLY GLY SEQRES 14 A 223 LYS ASP SER CYS GLN GLY ASP SER GLY GLY PRO VAL VAL SEQRES 15 A 223 CYS SER GLY LYS LEU GLN GLY ILE VAL SER TRP GLY SER SEQRES 16 A 223 GLY CYS ALA GLN LYS ASN LYS PRO GLY VAL TYR THR LYS SEQRES 17 A 223 VAL CYS ASN TYR VAL SER TRP ILE LYS GLN THR ILE ALA SEQRES 18 A 223 SER ASN SEQRES 1 B 223 ILE VAL GLY GLY TYR THR CYS GLY ALA ASN THR VAL PRO SEQRES 2 B 223 TYR GLN VAL SER LEU ASN SER GLY TYR HIS PHE CYS GLY SEQRES 3 B 223 GLY SER LEU ILE ASN SER GLN TRP VAL VAL SER ALA ALA SEQRES 4 B 223 HIS CYS TYR LYS SER GLY ILE GLN VAL ARG LEU GLY GLU SEQRES 5 B 223 ASP ASN ILE ASN VAL VAL GLU GLY ASN GLU GLN PHE ILE SEQRES 6 B 223 SER ALA SER LYS SER ILE VAL HIS PRO SER TYR ASN SER SEQRES 7 B 223 ASN THR LEU ASN ASN ASP ILE MET LEU ILE LYS LEU LYS SEQRES 8 B 223 SER ALA ALA SER LEU ASN SER ARG VAL ALA SER ILE SER SEQRES 9 B 223 LEU PRO THR SER CYS ALA SER ALA GLY THR GLN CYS LEU SEQRES 10 B 223 ILE SER GLY TRP GLY ASN THR LYS SER SER GLY THR SER SEQRES 11 B 223 TYR PRO ASP VAL LEU LYS CYS LEU LYS ALA PRO ILE LEU SEQRES 12 B 223 SER ASP SER SER CYS LYS SER ALA TYR PRO GLY GLN ILE SEQRES 13 B 223 THR SER ASN MET PHE CYS ALA GLY TYR LEU GLU GLY GLY SEQRES 14 B 223 LYS ASP SER CYS GLN GLY ASP SER GLY GLY PRO VAL VAL SEQRES 15 B 223 CYS SER GLY LYS LEU GLN GLY ILE VAL SER TRP GLY SER SEQRES 16 B 223 GLY CYS ALA GLN LYS ASN LYS PRO GLY VAL TYR THR LYS SEQRES 17 B 223 VAL CYS ASN TYR VAL SER TRP ILE LYS GLN THR ILE ALA SEQRES 18 B 223 SER ASN HET A2C A1001 26 HET CA A2001 1 HET CU A3001 1 HET A2C B1002 26 HET CA B2002 1 HET CU B3002 1 HETNAM A2C 3,3'-[ETHANE-1,2-DIYLBIS(NITRILOMETHYLYLIDENE)]BIS(4- HETNAM 2 A2C HYDROXYBENZENECARBOXIMIDAMIDE) HETNAM CA CALCIUM ION HETNAM CU COPPER (II) ION FORMUL 3 A2C 2(C18 H20 N6 O2) FORMUL 4 CA 2(CA 2+) FORMUL 5 CU 2(CU 2+) FORMUL 9 HOH *402(H2 O) HELIX 1 1 ALA A 38 TYR A 42 5 5 HELIX 2 2 SER A 144 TYR A 152 1 9 HELIX 3 3 TYR A 212 SER A 222 1 11 HELIX 4 4 ALA B 38 TYR B 42 5 5 HELIX 5 5 SER B 144 TYR B 152 1 9 HELIX 6 6 TYR B 212 SER B 222 1 11 SHEET 1 A 7 TYR A 5 THR A 6 0 SHEET 2 A 7 LYS A 136 PRO A 141 -1 O CYS A 137 N TYR A 5 SHEET 3 A 7 GLN A 115 GLY A 120 -1 N ILE A 118 O LEU A 138 SHEET 4 A 7 PRO A 180 CYS A 183 -1 O VAL A 182 N LEU A 117 SHEET 5 A 7 LYS A 186 TRP A 193 -1 O LYS A 186 N CYS A 183 SHEET 6 A 7 GLY A 204 LYS A 208 -1 O VAL A 205 N TRP A 193 SHEET 7 A 7 MET A 160 ALA A 163 -1 N PHE A 161 O TYR A 206 SHEET 1 B 7 GLN A 15 ASN A 19 0 SHEET 2 B 7 HIS A 23 ASN A 31 -1 O CYS A 25 N LEU A 18 SHEET 3 B 7 TRP A 34 SER A 37 -1 O VAL A 36 N SER A 28 SHEET 4 B 7 MET A 86 LEU A 90 -1 O MET A 86 N SER A 37 SHEET 5 B 7 GLN A 63 VAL A 72 -1 N ILE A 71 O LEU A 87 SHEET 6 B 7 GLN A 47 LEU A 50 -1 N VAL A 48 O ILE A 65 SHEET 7 B 7 GLN A 15 ASN A 19 -1 N ASN A 19 O GLN A 47 SHEET 1 C 7 TYR B 5 THR B 6 0 SHEET 2 C 7 LYS B 136 PRO B 141 -1 O CYS B 137 N TYR B 5 SHEET 3 C 7 GLN B 115 GLY B 120 -1 N ILE B 118 O LEU B 138 SHEET 4 C 7 PRO B 180 CYS B 183 -1 O VAL B 182 N LEU B 117 SHEET 5 C 7 LYS B 186 TRP B 193 -1 O LYS B 186 N CYS B 183 SHEET 6 C 7 GLY B 204 LYS B 208 -1 O VAL B 205 N TRP B 193 SHEET 7 C 7 MET B 160 ALA B 163 -1 N PHE B 161 O TYR B 206 SHEET 1 D 7 GLN B 15 ASN B 19 0 SHEET 2 D 7 HIS B 23 ASN B 31 -1 O CYS B 25 N LEU B 18 SHEET 3 D 7 TRP B 34 SER B 37 -1 O VAL B 36 N SER B 28 SHEET 4 D 7 MET B 86 LEU B 90 -1 O MET B 86 N SER B 37 SHEET 5 D 7 GLN B 63 VAL B 72 -1 N ILE B 71 O LEU B 87 SHEET 6 D 7 GLN B 47 LEU B 50 -1 N VAL B 48 O ILE B 65 SHEET 7 D 7 GLN B 15 ASN B 19 -1 N ASN B 19 O GLN B 47 SSBOND 1 CYS A 7 CYS A 137 1555 1555 2.03 SSBOND 2 CYS A 25 CYS A 41 1555 1555 2.03 SSBOND 3 CYS A 109 CYS A 210 1555 1555 2.03 SSBOND 4 CYS A 116 CYS A 183 1555 1555 2.03 SSBOND 5 CYS A 148 CYS A 162 1555 1555 2.03 SSBOND 6 CYS A 173 CYS A 197 1555 1555 2.03 SSBOND 7 CYS B 7 CYS B 137 1555 1555 2.03 SSBOND 8 CYS B 25 CYS B 41 1555 1555 2.03 SSBOND 9 CYS B 109 CYS B 210 1555 1555 2.03 SSBOND 10 CYS B 116 CYS B 183 1555 1555 2.03 SSBOND 11 CYS B 148 CYS B 162 1555 1555 2.03 SSBOND 12 CYS B 173 CYS B 197 1555 1555 2.03 LINK OE1 GLU A 52 CA CA A2001 1555 1555 2.22 LINK O ASN A 54 CA CA A2001 1555 1555 2.36 LINK O VAL A 57 CA CA A2001 1555 1555 2.26 LINK OE2 GLU A 62 CA CA A2001 1555 1555 2.32 LINK OG SER A 177 CU CU A3001 1555 1555 2.55 LINK O HOH A 227 CA CA A2001 1555 1555 2.35 LINK O HOH A 291 CA CA A2001 1555 1555 2.42 LINK O HOH A 402 CU CU A3001 1555 1555 2.36 LINK OAO A2C A1001 CU CU A3001 1555 1555 2.21 LINK NAV A2C A1001 CU CU A3001 1555 1555 2.64 LINK OE1 GLU B 52 CA CA B2002 1555 1555 2.22 LINK O ASN B 54 CA CA B2002 1555 1555 2.34 LINK O VAL B 57 CA CA B2002 1555 1555 2.25 LINK OE2 GLU B 62 CA CA B2002 1555 1555 2.33 LINK OG SER B 177 CU CU B3002 1555 1555 2.21 LINK O HOH B 224 CA CA B2002 1555 1555 2.44 LINK O HOH B 229 CA CA B2002 1555 1555 2.41 LINK OAO A2C B1002 CU CU B3002 1555 1555 2.12 LINK NAV A2C B1002 CU CU B3002 1555 1555 2.20 SITE 1 AC1 13 PHE A 24 HIS A 40 ASP A 171 SER A 172 SITE 2 AC1 13 CYS A 173 GLY A 175 ASP A 176 SER A 177 SITE 3 AC1 13 VAL A 191 GLY A 196 HOH A 326 HOH A 400 SITE 4 AC1 13 CU A3001 SITE 1 AC2 6 GLU A 52 ASN A 54 VAL A 57 GLU A 62 SITE 2 AC2 6 HOH A 227 HOH A 291 SITE 1 AC3 4 SER A 177 HOH A 400 HOH A 402 A2C A1001 SITE 1 AC4 15 HOH A 232 HOH A 358 PHE B 24 HIS B 40 SITE 2 AC4 15 ASP B 171 SER B 172 CYS B 173 GLY B 175 SITE 3 AC4 15 ASP B 176 SER B 177 VAL B 191 GLY B 196 SITE 4 AC4 15 HOH B 354 HOH B 401 CU B3002 SITE 1 AC5 6 GLU B 52 ASN B 54 VAL B 57 GLU B 62 SITE 2 AC5 6 HOH B 224 HOH B 229 SITE 1 AC6 3 SER B 177 HOH B 401 A2C B1002 CRYST1 54.568 54.568 107.235 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018326 0.010580 0.000000 0.00000 SCALE2 0.000000 0.021161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009325 0.00000