data_3AC9 # _entry.id 3AC9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3AC9 pdb_00003ac9 10.2210/pdb3ac9/pdb RCSB RCSB029075 ? ? WWPDB D_1000029075 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3L85 'The same protein in complex with 8-oxo-dGMP' unspecified PDB 3ACA 'The same protein in complex with 8-oxo-dADP and manganese' unspecified # _pdbx_database_status.entry_id 3AC9 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-12-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Arimori, T.' 1 'Yamagata, Y.' 2 # _citation.id primary _citation.title 'Diverse substrate recognition and hydrolysis mechanisms of human NUDT5' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 8972 _citation.page_last 8983 _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21768126 _citation.pdbx_database_id_DOI 10.1093/nar/gkr575 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Arimori, T.' 1 ? primary 'Tamaoki, H.' 2 ? primary 'Nakamura, T.' 3 ? primary 'Kamiya, H.' 4 ? primary 'Ikemizu, S.' 5 ? primary 'Takagi, Y.' 6 ? primary 'Ishibashi, T.' 7 ? primary 'Harashima, H.' 8 ? primary 'Sekiguchi, M.' 9 ? primary 'Yamagata, Y.' 10 ? # _cell.entry_id 3AC9 _cell.length_a 113.240 _cell.length_b 40.442 _cell.length_c 99.418 _cell.angle_alpha 90.00 _cell.angle_beta 121.59 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3AC9 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ADP-sugar pyrophosphatase' 21643.592 2 3.6.1.13 ? 'residues 14-208' ? 2 non-polymer syn ;2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate) ; 443.201 2 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 2 ? ? ? ? 4 water nat water 18.015 167 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NUDT5, Nucleoside diphosphate-linked moiety X motif 5, Nudix motif 5, YSA1H' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KQYIISEELISEGKWVKLEKTTYMDPTGKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIE FPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISL PKNDLLQRLDALVAEEHLTVDARVYSYALALKHAN ; _entity_poly.pdbx_seq_one_letter_code_can ;KQYIISEELISEGKWVKLEKTTYMDPTGKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIE FPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISL PKNDLLQRLDALVAEEHLTVDARVYSYALALKHAN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 GLN n 1 3 TYR n 1 4 ILE n 1 5 ILE n 1 6 SER n 1 7 GLU n 1 8 GLU n 1 9 LEU n 1 10 ILE n 1 11 SER n 1 12 GLU n 1 13 GLY n 1 14 LYS n 1 15 TRP n 1 16 VAL n 1 17 LYS n 1 18 LEU n 1 19 GLU n 1 20 LYS n 1 21 THR n 1 22 THR n 1 23 TYR n 1 24 MET n 1 25 ASP n 1 26 PRO n 1 27 THR n 1 28 GLY n 1 29 LYS n 1 30 THR n 1 31 ARG n 1 32 THR n 1 33 TRP n 1 34 GLU n 1 35 SER n 1 36 VAL n 1 37 LYS n 1 38 ARG n 1 39 THR n 1 40 THR n 1 41 ARG n 1 42 LYS n 1 43 GLU n 1 44 GLN n 1 45 THR n 1 46 ALA n 1 47 ASP n 1 48 GLY n 1 49 VAL n 1 50 ALA n 1 51 VAL n 1 52 ILE n 1 53 PRO n 1 54 VAL n 1 55 LEU n 1 56 GLN n 1 57 ARG n 1 58 THR n 1 59 LEU n 1 60 HIS n 1 61 TYR n 1 62 GLU n 1 63 CYS n 1 64 ILE n 1 65 VAL n 1 66 LEU n 1 67 VAL n 1 68 LYS n 1 69 GLN n 1 70 PHE n 1 71 ARG n 1 72 PRO n 1 73 PRO n 1 74 MET n 1 75 GLY n 1 76 GLY n 1 77 TYR n 1 78 CYS n 1 79 ILE n 1 80 GLU n 1 81 PHE n 1 82 PRO n 1 83 ALA n 1 84 GLY n 1 85 LEU n 1 86 ILE n 1 87 ASP n 1 88 ASP n 1 89 GLY n 1 90 GLU n 1 91 THR n 1 92 PRO n 1 93 GLU n 1 94 ALA n 1 95 ALA n 1 96 ALA n 1 97 LEU n 1 98 ARG n 1 99 GLU n 1 100 LEU n 1 101 GLU n 1 102 GLU n 1 103 GLU n 1 104 THR n 1 105 GLY n 1 106 TYR n 1 107 LYS n 1 108 GLY n 1 109 ASP n 1 110 ILE n 1 111 ALA n 1 112 GLU n 1 113 CYS n 1 114 SER n 1 115 PRO n 1 116 ALA n 1 117 VAL n 1 118 CYS n 1 119 MET n 1 120 ASP n 1 121 PRO n 1 122 GLY n 1 123 LEU n 1 124 SER n 1 125 ASN n 1 126 CYS n 1 127 THR n 1 128 ILE n 1 129 HIS n 1 130 ILE n 1 131 VAL n 1 132 THR n 1 133 VAL n 1 134 THR n 1 135 ILE n 1 136 ASN n 1 137 GLY n 1 138 ASP n 1 139 ASP n 1 140 ALA n 1 141 GLU n 1 142 ASN n 1 143 ALA n 1 144 ARG n 1 145 PRO n 1 146 LYS n 1 147 PRO n 1 148 LYS n 1 149 PRO n 1 150 GLY n 1 151 ASP n 1 152 GLY n 1 153 GLU n 1 154 PHE n 1 155 VAL n 1 156 GLU n 1 157 VAL n 1 158 ILE n 1 159 SER n 1 160 LEU n 1 161 PRO n 1 162 LYS n 1 163 ASN n 1 164 ASP n 1 165 LEU n 1 166 LEU n 1 167 GLN n 1 168 ARG n 1 169 LEU n 1 170 ASP n 1 171 ALA n 1 172 LEU n 1 173 VAL n 1 174 ALA n 1 175 GLU n 1 176 GLU n 1 177 HIS n 1 178 LEU n 1 179 THR n 1 180 VAL n 1 181 ASP n 1 182 ALA n 1 183 ARG n 1 184 VAL n 1 185 TYR n 1 186 SER n 1 187 TYR n 1 188 ALA n 1 189 LEU n 1 190 ALA n 1 191 LEU n 1 192 LYS n 1 193 HIS n 1 194 ALA n 1 195 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NUDT5, HSPC115' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET28b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NUDT5_HUMAN _struct_ref.pdbx_db_accession Q9UKK9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KQYIISEELISEGKWVKLEKTTYMDPTGKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIE FPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISL PKNDLLQRLDALVAEEHLTVDARVYSYALALKHAN ; _struct_ref.pdbx_align_begin 14 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3AC9 A 1 ? 195 ? Q9UKK9 14 ? 208 ? 14 208 2 1 3AC9 B 1 ? 195 ? Q9UKK9 14 ? 208 ? 14 208 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8GD non-polymer . ;2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate) ; "8-oxo-7,8-dihydro-2'-deoxy-guanosine-5'-diphosphate" 'C10 H15 N5 O11 P2' 443.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3AC9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 45.09 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Sodium Citrate, 35% PEG3350, pH 6.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-11-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU # _reflns.entry_id 3AC9 _reflns.B_iso_Wilson_estimate 30.060 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 50 _reflns.number_all 22415 _reflns.number_obs 22415 _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 31.3 _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 87.7 _reflns_shell.Rmerge_I_obs 0.368 _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.number_unique_all 1986 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3AC9 _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 28.269 _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.500 _refine.ls_number_reflns_obs 22394 _refine.ls_number_reflns_all 22415 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.197 _refine.ls_R_factor_R_work 0.195 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.236 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.850 _refine.ls_number_reflns_R_free 1085 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 38.827 _refine.solvent_model_param_bsol 50.779 _refine.solvent_model_param_ksol 0.350 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -8.268 _refine.aniso_B[2][2] 14.652 _refine.aniso_B[3][3] -6.384 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.441 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.690 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3L85 _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.803 _refine.B_iso_max 90.38 _refine.B_iso_min 15.36 _refine.occupancy_max 1.00 _refine.occupancy_min 0.41 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error 26.28 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3034 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 167 _refine_hist.number_atoms_total 3250 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 28.269 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 3143 0.006 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 4281 0.915 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 488 0.060 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 550 0.004 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 1173 16.346 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.100 2.189 8 88.000 2377 . 0.232 0.290 . 110 . 2487 . . 'X-RAY DIFFRACTION' 2.189 2.305 8 95.000 2538 . 0.218 0.284 . 159 . 2697 . . 'X-RAY DIFFRACTION' 2.305 2.449 8 99.000 2673 . 0.219 0.291 . 139 . 2812 . . 'X-RAY DIFFRACTION' 2.449 2.638 8 100.000 2723 . 0.217 0.289 . 128 . 2851 . . 'X-RAY DIFFRACTION' 2.638 2.903 8 100.000 2735 . 0.220 0.271 . 139 . 2874 . . 'X-RAY DIFFRACTION' 2.903 3.323 8 100.000 2720 . 0.206 0.238 . 125 . 2845 . . 'X-RAY DIFFRACTION' 3.323 4.184 8 100.000 2724 . 0.173 0.223 . 145 . 2869 . . 'X-RAY DIFFRACTION' 4.184 28.272 8 99.000 2819 . 0.170 0.180 . 140 . 2959 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3AC9 _struct.title 'Crystal structure of human NUDT5 complexed with 8-oxo-dGDP and manganese' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3AC9 _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'Nudix motif, Magnesium, HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 72 ? GLY A 75 ? PRO A 85 GLY A 88 5 ? 4 HELX_P HELX_P2 2 THR A 91 ? GLY A 105 ? THR A 104 GLY A 118 1 ? 15 HELX_P HELX_P3 3 ASP A 139 ? ALA A 143 ? ASP A 152 ALA A 156 5 ? 5 HELX_P HELX_P4 4 ASP A 164 ? GLU A 175 ? ASP A 177 GLU A 188 1 ? 12 HELX_P HELX_P5 5 ASP A 181 ? ALA A 194 ? ASP A 194 ALA A 207 1 ? 14 HELX_P HELX_P6 6 THR B 91 ? GLY B 105 ? THR B 104 GLY B 118 1 ? 15 HELX_P HELX_P7 7 ASP B 139 ? ALA B 143 ? ASP B 152 ALA B 156 5 ? 5 HELX_P HELX_P8 8 ASP B 164 ? GLU B 176 ? ASP B 177 GLU B 189 1 ? 13 HELX_P HELX_P9 9 ASP B 181 ? ALA B 194 ? ASP B 194 ALA B 207 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 175 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 188 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 GLU _struct_mon_prot_cis.pdbx_label_seq_id_2 176 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLU _struct_mon_prot_cis.pdbx_auth_seq_id_2 189 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.36 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 6 ? D ? 3 ? E ? 3 ? F ? 4 ? G ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? parallel G 3 4 ? anti-parallel G 4 5 ? anti-parallel G 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 3 ? SER A 11 ? TYR A 16 SER A 24 A 2 VAL A 16 ? MET A 24 ? VAL A 29 MET A 37 A 3 THR A 30 ? ARG A 38 ? THR A 43 ARG A 51 B 1 ALA A 83 ? LEU A 85 ? ALA A 96 LEU A 98 B 2 GLY A 48 ? GLN A 56 ? GLY A 61 GLN A 69 B 3 CYS A 63 ? PHE A 70 ? CYS A 76 PHE A 83 B 4 GLU A 156 ? PRO A 161 ? GLU A 169 PRO A 174 C 1 ASP A 109 ? CYS A 118 ? ASP A 122 CYS A 131 C 2 THR A 127 ? ASN A 136 ? THR A 140 ASN A 149 C 3 GLY A 48 ? GLN A 56 ? GLY A 61 GLN A 69 C 4 CYS A 63 ? PHE A 70 ? CYS A 76 PHE A 83 C 5 TYR A 77 ? GLU A 80 ? TYR A 90 GLU A 93 C 6 LEU A 178 ? VAL A 180 ? LEU A 191 VAL A 193 D 1 TYR B 3 ? GLU B 12 ? TYR B 16 GLU B 25 D 2 VAL B 16 ? MET B 24 ? VAL B 29 MET B 37 D 3 THR B 30 ? ARG B 31 ? THR B 43 ARG B 44 E 1 TYR B 3 ? GLU B 12 ? TYR B 16 GLU B 25 E 2 VAL B 16 ? MET B 24 ? VAL B 29 MET B 37 E 3 GLU B 34 ? ARG B 38 ? GLU B 47 ARG B 51 F 1 ALA B 83 ? LEU B 85 ? ALA B 96 LEU B 98 F 2 GLY B 48 ? GLN B 56 ? GLY B 61 GLN B 69 F 3 CYS B 63 ? PHE B 70 ? CYS B 76 PHE B 83 F 4 GLU B 156 ? PRO B 161 ? GLU B 169 PRO B 174 G 1 ASP B 109 ? CYS B 118 ? ASP B 122 CYS B 131 G 2 THR B 127 ? ASN B 136 ? THR B 140 ASN B 149 G 3 GLY B 48 ? GLN B 56 ? GLY B 61 GLN B 69 G 4 CYS B 63 ? PHE B 70 ? CYS B 76 PHE B 83 G 5 TYR B 77 ? GLU B 80 ? TYR B 90 GLU B 93 G 6 THR B 179 ? VAL B 180 ? THR B 192 VAL B 193 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 5 ? N ILE A 18 O THR A 22 ? O THR A 35 A 2 3 N THR A 21 ? N THR A 34 O TRP A 33 ? O TRP A 46 B 1 2 O GLY A 84 ? O GLY A 97 N VAL A 49 ? N VAL A 62 B 2 3 N LEU A 55 ? N LEU A 68 O CYS A 63 ? O CYS A 76 B 3 4 N ILE A 64 ? N ILE A 77 O LEU A 160 ? O LEU A 173 C 1 2 N VAL A 117 ? N VAL A 130 O ILE A 128 ? O ILE A 141 C 2 3 O VAL A 133 ? O VAL A 146 N VAL A 54 ? N VAL A 67 C 3 4 N LEU A 55 ? N LEU A 68 O CYS A 63 ? O CYS A 76 C 4 5 N VAL A 67 ? N VAL A 80 O GLU A 80 ? O GLU A 93 C 5 6 N ILE A 79 ? N ILE A 92 O THR A 179 ? O THR A 192 D 1 2 N ILE B 5 ? N ILE B 18 O THR B 22 ? O THR B 35 D 2 3 N TYR B 23 ? N TYR B 36 O ARG B 31 ? O ARG B 44 E 1 2 N ILE B 5 ? N ILE B 18 O THR B 22 ? O THR B 35 E 2 3 N LYS B 17 ? N LYS B 30 O LYS B 37 ? O LYS B 50 F 1 2 O GLY B 84 ? O GLY B 97 N VAL B 49 ? N VAL B 62 F 2 3 N LEU B 55 ? N LEU B 68 O CYS B 63 ? O CYS B 76 F 3 4 N LEU B 66 ? N LEU B 79 O ILE B 158 ? O ILE B 171 G 1 2 N VAL B 117 ? N VAL B 130 O ILE B 128 ? O ILE B 141 G 2 3 O ILE B 135 ? O ILE B 148 N GLN B 56 ? N GLN B 69 G 3 4 N LEU B 55 ? N LEU B 68 O CYS B 63 ? O CYS B 76 G 4 5 N VAL B 67 ? N VAL B 80 O GLU B 80 ? O GLU B 93 G 5 6 N ILE B 79 ? N ILE B 92 O THR B 179 ? O THR B 192 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 8GD 2 ? 5 'BINDING SITE FOR RESIDUE 8GD A 2' AC2 Software B 8GD 1 ? 16 'BINDING SITE FOR RESIDUE 8GD B 1' AC3 Software B MN 209 ? 6 'BINDING SITE FOR RESIDUE MN B 209' AC4 Software B MN 2 ? 6 'BINDING SITE FOR RESIDUE MN B 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 TRP A 15 ? TRP A 28 . ? 1_555 ? 2 AC1 5 ARG A 38 ? ARG A 51 . ? 1_555 ? 3 AC1 5 HOH G . ? HOH A 378 . ? 1_555 ? 4 AC1 5 TRP B 33 ? TRP B 46 . ? 1_555 ? 5 AC1 5 GLU B 34 ? GLU B 47 . ? 1_555 ? 6 AC2 16 TRP A 33 ? TRP A 46 . ? 1_555 ? 7 AC2 16 GLU A 34 ? GLU A 47 . ? 1_555 ? 8 AC2 16 MN F . ? MN B 2 . ? 1_555 ? 9 AC2 16 TRP B 15 ? TRP B 28 . ? 1_555 ? 10 AC2 16 VAL B 16 ? VAL B 29 . ? 1_555 ? 11 AC2 16 ARG B 38 ? ARG B 51 . ? 1_555 ? 12 AC2 16 ARG B 71 ? ARG B 84 . ? 1_555 ? 13 AC2 16 ALA B 83 ? ALA B 96 . ? 1_555 ? 14 AC2 16 GLY B 84 ? GLY B 97 . ? 1_555 ? 15 AC2 16 LEU B 85 ? LEU B 98 . ? 1_555 ? 16 AC2 16 GLU B 103 ? GLU B 116 . ? 1_555 ? 17 AC2 16 GLU B 153 ? GLU B 166 . ? 1_555 ? 18 AC2 16 MN E . ? MN B 209 . ? 1_555 ? 19 AC2 16 HOH H . ? HOH B 445 . ? 1_555 ? 20 AC2 16 HOH H . ? HOH B 446 . ? 1_555 ? 21 AC2 16 HOH H . ? HOH B 461 . ? 1_555 ? 22 AC3 6 8GD D . ? 8GD B 1 . ? 1_555 ? 23 AC3 6 MN F . ? MN B 2 . ? 1_555 ? 24 AC3 6 GLU B 99 ? GLU B 112 . ? 1_555 ? 25 AC3 6 GLU B 103 ? GLU B 116 . ? 1_555 ? 26 AC3 6 GLU B 153 ? GLU B 166 . ? 1_555 ? 27 AC3 6 HOH H . ? HOH B 465 . ? 1_555 ? 28 AC4 6 8GD D . ? 8GD B 1 . ? 1_555 ? 29 AC4 6 ALA B 83 ? ALA B 96 . ? 1_555 ? 30 AC4 6 GLU B 103 ? GLU B 116 . ? 1_555 ? 31 AC4 6 MN E . ? MN B 209 . ? 1_555 ? 32 AC4 6 HOH H . ? HOH B 445 . ? 1_555 ? 33 AC4 6 HOH H . ? HOH B 455 . ? 1_555 ? # _atom_sites.entry_id 3AC9 _atom_sites.fract_transf_matrix[1][1] 0.008831 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005431 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024727 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011808 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 14 14 LYS LYS A . n A 1 2 GLN 2 15 15 GLN GLN A . n A 1 3 TYR 3 16 16 TYR TYR A . n A 1 4 ILE 4 17 17 ILE ILE A . n A 1 5 ILE 5 18 18 ILE ILE A . n A 1 6 SER 6 19 19 SER SER A . n A 1 7 GLU 7 20 20 GLU GLU A . n A 1 8 GLU 8 21 21 GLU GLU A . n A 1 9 LEU 9 22 22 LEU LEU A . n A 1 10 ILE 10 23 23 ILE ILE A . n A 1 11 SER 11 24 24 SER SER A . n A 1 12 GLU 12 25 25 GLU GLU A . n A 1 13 GLY 13 26 26 GLY GLY A . n A 1 14 LYS 14 27 27 LYS LYS A . n A 1 15 TRP 15 28 28 TRP TRP A . n A 1 16 VAL 16 29 29 VAL VAL A . n A 1 17 LYS 17 30 30 LYS LYS A . n A 1 18 LEU 18 31 31 LEU LEU A . n A 1 19 GLU 19 32 32 GLU GLU A . n A 1 20 LYS 20 33 33 LYS LYS A . n A 1 21 THR 21 34 34 THR THR A . n A 1 22 THR 22 35 35 THR THR A . n A 1 23 TYR 23 36 36 TYR TYR A . n A 1 24 MET 24 37 37 MET MET A . n A 1 25 ASP 25 38 38 ASP ASP A . n A 1 26 PRO 26 39 39 PRO PRO A . n A 1 27 THR 27 40 40 THR THR A . n A 1 28 GLY 28 41 41 GLY GLY A . n A 1 29 LYS 29 42 42 LYS LYS A . n A 1 30 THR 30 43 43 THR THR A . n A 1 31 ARG 31 44 44 ARG ARG A . n A 1 32 THR 32 45 45 THR THR A . n A 1 33 TRP 33 46 46 TRP TRP A . n A 1 34 GLU 34 47 47 GLU GLU A . n A 1 35 SER 35 48 48 SER SER A . n A 1 36 VAL 36 49 49 VAL VAL A . n A 1 37 LYS 37 50 50 LYS LYS A . n A 1 38 ARG 38 51 51 ARG ARG A . n A 1 39 THR 39 52 52 THR THR A . n A 1 40 THR 40 53 53 THR THR A . n A 1 41 ARG 41 54 54 ARG ARG A . n A 1 42 LYS 42 55 55 LYS LYS A . n A 1 43 GLU 43 56 56 GLU GLU A . n A 1 44 GLN 44 57 57 GLN GLN A . n A 1 45 THR 45 58 58 THR THR A . n A 1 46 ALA 46 59 59 ALA ALA A . n A 1 47 ASP 47 60 60 ASP ASP A . n A 1 48 GLY 48 61 61 GLY GLY A . n A 1 49 VAL 49 62 62 VAL VAL A . n A 1 50 ALA 50 63 63 ALA ALA A . n A 1 51 VAL 51 64 64 VAL VAL A . n A 1 52 ILE 52 65 65 ILE ILE A . n A 1 53 PRO 53 66 66 PRO PRO A . n A 1 54 VAL 54 67 67 VAL VAL A . n A 1 55 LEU 55 68 68 LEU LEU A . n A 1 56 GLN 56 69 69 GLN GLN A . n A 1 57 ARG 57 70 70 ARG ARG A . n A 1 58 THR 58 71 71 THR THR A . n A 1 59 LEU 59 72 72 LEU LEU A . n A 1 60 HIS 60 73 73 HIS HIS A . n A 1 61 TYR 61 74 74 TYR TYR A . n A 1 62 GLU 62 75 75 GLU GLU A . n A 1 63 CYS 63 76 76 CYS CYS A . n A 1 64 ILE 64 77 77 ILE ILE A . n A 1 65 VAL 65 78 78 VAL VAL A . n A 1 66 LEU 66 79 79 LEU LEU A . n A 1 67 VAL 67 80 80 VAL VAL A . n A 1 68 LYS 68 81 81 LYS LYS A . n A 1 69 GLN 69 82 82 GLN GLN A . n A 1 70 PHE 70 83 83 PHE PHE A . n A 1 71 ARG 71 84 84 ARG ARG A . n A 1 72 PRO 72 85 85 PRO PRO A . n A 1 73 PRO 73 86 86 PRO PRO A . n A 1 74 MET 74 87 87 MET MET A . n A 1 75 GLY 75 88 88 GLY GLY A . n A 1 76 GLY 76 89 89 GLY GLY A . n A 1 77 TYR 77 90 90 TYR TYR A . n A 1 78 CYS 78 91 91 CYS CYS A . n A 1 79 ILE 79 92 92 ILE ILE A . n A 1 80 GLU 80 93 93 GLU GLU A . n A 1 81 PHE 81 94 94 PHE PHE A . n A 1 82 PRO 82 95 95 PRO PRO A . n A 1 83 ALA 83 96 96 ALA ALA A . n A 1 84 GLY 84 97 97 GLY GLY A . n A 1 85 LEU 85 98 98 LEU LEU A . n A 1 86 ILE 86 99 99 ILE ILE A . n A 1 87 ASP 87 100 100 ASP ASP A . n A 1 88 ASP 88 101 101 ASP ASP A . n A 1 89 GLY 89 102 102 GLY GLY A . n A 1 90 GLU 90 103 103 GLU GLU A . n A 1 91 THR 91 104 104 THR THR A . n A 1 92 PRO 92 105 105 PRO PRO A . n A 1 93 GLU 93 106 106 GLU GLU A . n A 1 94 ALA 94 107 107 ALA ALA A . n A 1 95 ALA 95 108 108 ALA ALA A . n A 1 96 ALA 96 109 109 ALA ALA A . n A 1 97 LEU 97 110 110 LEU LEU A . n A 1 98 ARG 98 111 111 ARG ARG A . n A 1 99 GLU 99 112 112 GLU GLU A . n A 1 100 LEU 100 113 113 LEU LEU A . n A 1 101 GLU 101 114 114 GLU GLU A . n A 1 102 GLU 102 115 115 GLU GLU A . n A 1 103 GLU 103 116 116 GLU GLU A . n A 1 104 THR 104 117 117 THR THR A . n A 1 105 GLY 105 118 118 GLY GLY A . n A 1 106 TYR 106 119 119 TYR TYR A . n A 1 107 LYS 107 120 120 LYS LYS A . n A 1 108 GLY 108 121 121 GLY GLY A . n A 1 109 ASP 109 122 122 ASP ASP A . n A 1 110 ILE 110 123 123 ILE ILE A . n A 1 111 ALA 111 124 124 ALA ALA A . n A 1 112 GLU 112 125 125 GLU GLU A . n A 1 113 CYS 113 126 126 CYS CYS A . n A 1 114 SER 114 127 127 SER SER A . n A 1 115 PRO 115 128 128 PRO PRO A . n A 1 116 ALA 116 129 129 ALA ALA A . n A 1 117 VAL 117 130 130 VAL VAL A . n A 1 118 CYS 118 131 131 CYS CYS A . n A 1 119 MET 119 132 132 MET MET A . n A 1 120 ASP 120 133 133 ASP ASP A . n A 1 121 PRO 121 134 134 PRO PRO A . n A 1 122 GLY 122 135 135 GLY GLY A . n A 1 123 LEU 123 136 136 LEU LEU A . n A 1 124 SER 124 137 137 SER SER A . n A 1 125 ASN 125 138 138 ASN ASN A . n A 1 126 CYS 126 139 139 CYS CYS A . n A 1 127 THR 127 140 140 THR THR A . n A 1 128 ILE 128 141 141 ILE ILE A . n A 1 129 HIS 129 142 142 HIS HIS A . n A 1 130 ILE 130 143 143 ILE ILE A . n A 1 131 VAL 131 144 144 VAL VAL A . n A 1 132 THR 132 145 145 THR THR A . n A 1 133 VAL 133 146 146 VAL VAL A . n A 1 134 THR 134 147 147 THR THR A . n A 1 135 ILE 135 148 148 ILE ILE A . n A 1 136 ASN 136 149 149 ASN ASN A . n A 1 137 GLY 137 150 150 GLY GLY A . n A 1 138 ASP 138 151 151 ASP ASP A . n A 1 139 ASP 139 152 152 ASP ASP A . n A 1 140 ALA 140 153 153 ALA ALA A . n A 1 141 GLU 141 154 154 GLU GLU A . n A 1 142 ASN 142 155 155 ASN ASN A . n A 1 143 ALA 143 156 156 ALA ALA A . n A 1 144 ARG 144 157 157 ARG ARG A . n A 1 145 PRO 145 158 158 PRO PRO A . n A 1 146 LYS 146 159 159 LYS LYS A . n A 1 147 PRO 147 160 160 PRO PRO A . n A 1 148 LYS 148 161 161 LYS LYS A . n A 1 149 PRO 149 162 162 PRO PRO A . n A 1 150 GLY 150 163 163 GLY GLY A . n A 1 151 ASP 151 164 164 ASP ASP A . n A 1 152 GLY 152 165 165 GLY GLY A . n A 1 153 GLU 153 166 166 GLU GLU A . n A 1 154 PHE 154 167 167 PHE PHE A . n A 1 155 VAL 155 168 168 VAL VAL A . n A 1 156 GLU 156 169 169 GLU GLU A . n A 1 157 VAL 157 170 170 VAL VAL A . n A 1 158 ILE 158 171 171 ILE ILE A . n A 1 159 SER 159 172 172 SER SER A . n A 1 160 LEU 160 173 173 LEU LEU A . n A 1 161 PRO 161 174 174 PRO PRO A . n A 1 162 LYS 162 175 175 LYS LYS A . n A 1 163 ASN 163 176 176 ASN ASN A . n A 1 164 ASP 164 177 177 ASP ASP A . n A 1 165 LEU 165 178 178 LEU LEU A . n A 1 166 LEU 166 179 179 LEU LEU A . n A 1 167 GLN 167 180 180 GLN GLN A . n A 1 168 ARG 168 181 181 ARG ARG A . n A 1 169 LEU 169 182 182 LEU LEU A . n A 1 170 ASP 170 183 183 ASP ASP A . n A 1 171 ALA 171 184 184 ALA ALA A . n A 1 172 LEU 172 185 185 LEU LEU A . n A 1 173 VAL 173 186 186 VAL VAL A . n A 1 174 ALA 174 187 187 ALA ALA A . n A 1 175 GLU 175 188 188 GLU GLU A . n A 1 176 GLU 176 189 189 GLU GLU A . n A 1 177 HIS 177 190 190 HIS HIS A . n A 1 178 LEU 178 191 191 LEU LEU A . n A 1 179 THR 179 192 192 THR THR A . n A 1 180 VAL 180 193 193 VAL VAL A . n A 1 181 ASP 181 194 194 ASP ASP A . n A 1 182 ALA 182 195 195 ALA ALA A . n A 1 183 ARG 183 196 196 ARG ARG A . n A 1 184 VAL 184 197 197 VAL VAL A . n A 1 185 TYR 185 198 198 TYR TYR A . n A 1 186 SER 186 199 199 SER SER A . n A 1 187 TYR 187 200 200 TYR TYR A . n A 1 188 ALA 188 201 201 ALA ALA A . n A 1 189 LEU 189 202 202 LEU LEU A . n A 1 190 ALA 190 203 203 ALA ALA A . n A 1 191 LEU 191 204 204 LEU LEU A . n A 1 192 LYS 192 205 205 LYS LYS A . n A 1 193 HIS 193 206 206 HIS HIS A . n A 1 194 ALA 194 207 207 ALA ALA A . n A 1 195 ASN 195 208 208 ASN ASN A . n B 1 1 LYS 1 14 14 LYS LYS B . n B 1 2 GLN 2 15 15 GLN GLN B . n B 1 3 TYR 3 16 16 TYR TYR B . n B 1 4 ILE 4 17 17 ILE ILE B . n B 1 5 ILE 5 18 18 ILE ILE B . n B 1 6 SER 6 19 19 SER SER B . n B 1 7 GLU 7 20 20 GLU GLU B . n B 1 8 GLU 8 21 21 GLU GLU B . n B 1 9 LEU 9 22 22 LEU LEU B . n B 1 10 ILE 10 23 23 ILE ILE B . n B 1 11 SER 11 24 24 SER SER B . n B 1 12 GLU 12 25 25 GLU GLU B . n B 1 13 GLY 13 26 26 GLY GLY B . n B 1 14 LYS 14 27 27 LYS LYS B . n B 1 15 TRP 15 28 28 TRP TRP B . n B 1 16 VAL 16 29 29 VAL VAL B . n B 1 17 LYS 17 30 30 LYS LYS B . n B 1 18 LEU 18 31 31 LEU LEU B . n B 1 19 GLU 19 32 32 GLU GLU B . n B 1 20 LYS 20 33 33 LYS LYS B . n B 1 21 THR 21 34 34 THR THR B . n B 1 22 THR 22 35 35 THR THR B . n B 1 23 TYR 23 36 36 TYR TYR B . n B 1 24 MET 24 37 37 MET MET B . n B 1 25 ASP 25 38 38 ASP ASP B . n B 1 26 PRO 26 39 39 PRO PRO B . n B 1 27 THR 27 40 40 THR THR B . n B 1 28 GLY 28 41 41 GLY GLY B . n B 1 29 LYS 29 42 42 LYS LYS B . n B 1 30 THR 30 43 43 THR THR B . n B 1 31 ARG 31 44 44 ARG ARG B . n B 1 32 THR 32 45 45 THR THR B . n B 1 33 TRP 33 46 46 TRP TRP B . n B 1 34 GLU 34 47 47 GLU GLU B . n B 1 35 SER 35 48 48 SER SER B . n B 1 36 VAL 36 49 49 VAL VAL B . n B 1 37 LYS 37 50 50 LYS LYS B . n B 1 38 ARG 38 51 51 ARG ARG B . n B 1 39 THR 39 52 52 THR THR B . n B 1 40 THR 40 53 53 THR THR B . n B 1 41 ARG 41 54 54 ARG ARG B . n B 1 42 LYS 42 55 55 LYS LYS B . n B 1 43 GLU 43 56 56 GLU GLU B . n B 1 44 GLN 44 57 57 GLN GLN B . n B 1 45 THR 45 58 58 THR THR B . n B 1 46 ALA 46 59 59 ALA ALA B . n B 1 47 ASP 47 60 60 ASP ASP B . n B 1 48 GLY 48 61 61 GLY GLY B . n B 1 49 VAL 49 62 62 VAL VAL B . n B 1 50 ALA 50 63 63 ALA ALA B . n B 1 51 VAL 51 64 64 VAL VAL B . n B 1 52 ILE 52 65 65 ILE ILE B . n B 1 53 PRO 53 66 66 PRO PRO B . n B 1 54 VAL 54 67 67 VAL VAL B . n B 1 55 LEU 55 68 68 LEU LEU B . n B 1 56 GLN 56 69 69 GLN GLN B . n B 1 57 ARG 57 70 70 ARG ARG B . n B 1 58 THR 58 71 71 THR THR B . n B 1 59 LEU 59 72 72 LEU LEU B . n B 1 60 HIS 60 73 73 HIS HIS B . n B 1 61 TYR 61 74 74 TYR TYR B . n B 1 62 GLU 62 75 75 GLU GLU B . n B 1 63 CYS 63 76 76 CYS CYS B . n B 1 64 ILE 64 77 77 ILE ILE B . n B 1 65 VAL 65 78 78 VAL VAL B . n B 1 66 LEU 66 79 79 LEU LEU B . n B 1 67 VAL 67 80 80 VAL VAL B . n B 1 68 LYS 68 81 81 LYS LYS B . n B 1 69 GLN 69 82 82 GLN GLN B . n B 1 70 PHE 70 83 83 PHE PHE B . n B 1 71 ARG 71 84 84 ARG ARG B . n B 1 72 PRO 72 85 85 PRO PRO B . n B 1 73 PRO 73 86 86 PRO PRO B . n B 1 74 MET 74 87 87 MET MET B . n B 1 75 GLY 75 88 88 GLY GLY B . n B 1 76 GLY 76 89 89 GLY GLY B . n B 1 77 TYR 77 90 90 TYR TYR B . n B 1 78 CYS 78 91 91 CYS CYS B . n B 1 79 ILE 79 92 92 ILE ILE B . n B 1 80 GLU 80 93 93 GLU GLU B . n B 1 81 PHE 81 94 94 PHE PHE B . n B 1 82 PRO 82 95 95 PRO PRO B . n B 1 83 ALA 83 96 96 ALA ALA B . n B 1 84 GLY 84 97 97 GLY GLY B . n B 1 85 LEU 85 98 98 LEU LEU B . n B 1 86 ILE 86 99 99 ILE ILE B . n B 1 87 ASP 87 100 100 ASP ASP B . n B 1 88 ASP 88 101 101 ASP ASP B . n B 1 89 GLY 89 102 102 GLY GLY B . n B 1 90 GLU 90 103 103 GLU GLU B . n B 1 91 THR 91 104 104 THR THR B . n B 1 92 PRO 92 105 105 PRO PRO B . n B 1 93 GLU 93 106 106 GLU GLU B . n B 1 94 ALA 94 107 107 ALA ALA B . n B 1 95 ALA 95 108 108 ALA ALA B . n B 1 96 ALA 96 109 109 ALA ALA B . n B 1 97 LEU 97 110 110 LEU LEU B . n B 1 98 ARG 98 111 111 ARG ARG B . n B 1 99 GLU 99 112 112 GLU GLU B . n B 1 100 LEU 100 113 113 LEU LEU B . n B 1 101 GLU 101 114 114 GLU GLU B . n B 1 102 GLU 102 115 115 GLU GLU B . n B 1 103 GLU 103 116 116 GLU GLU B . n B 1 104 THR 104 117 117 THR THR B . n B 1 105 GLY 105 118 118 GLY GLY B . n B 1 106 TYR 106 119 119 TYR TYR B . n B 1 107 LYS 107 120 120 LYS LYS B . n B 1 108 GLY 108 121 121 GLY GLY B . n B 1 109 ASP 109 122 122 ASP ASP B . n B 1 110 ILE 110 123 123 ILE ILE B . n B 1 111 ALA 111 124 124 ALA ALA B . n B 1 112 GLU 112 125 125 GLU GLU B . n B 1 113 CYS 113 126 126 CYS CYS B . n B 1 114 SER 114 127 127 SER SER B . n B 1 115 PRO 115 128 128 PRO PRO B . n B 1 116 ALA 116 129 129 ALA ALA B . n B 1 117 VAL 117 130 130 VAL VAL B . n B 1 118 CYS 118 131 131 CYS CYS B . n B 1 119 MET 119 132 132 MET MET B . n B 1 120 ASP 120 133 133 ASP ASP B . n B 1 121 PRO 121 134 134 PRO PRO B . n B 1 122 GLY 122 135 135 GLY GLY B . n B 1 123 LEU 123 136 136 LEU LEU B . n B 1 124 SER 124 137 137 SER SER B . n B 1 125 ASN 125 138 138 ASN ASN B . n B 1 126 CYS 126 139 139 CYS CYS B . n B 1 127 THR 127 140 140 THR THR B . n B 1 128 ILE 128 141 141 ILE ILE B . n B 1 129 HIS 129 142 142 HIS HIS B . n B 1 130 ILE 130 143 143 ILE ILE B . n B 1 131 VAL 131 144 144 VAL VAL B . n B 1 132 THR 132 145 145 THR THR B . n B 1 133 VAL 133 146 146 VAL VAL B . n B 1 134 THR 134 147 147 THR THR B . n B 1 135 ILE 135 148 148 ILE ILE B . n B 1 136 ASN 136 149 149 ASN ASN B . n B 1 137 GLY 137 150 150 GLY GLY B . n B 1 138 ASP 138 151 151 ASP ASP B . n B 1 139 ASP 139 152 152 ASP ASP B . n B 1 140 ALA 140 153 153 ALA ALA B . n B 1 141 GLU 141 154 154 GLU GLU B . n B 1 142 ASN 142 155 155 ASN ASN B . n B 1 143 ALA 143 156 156 ALA ALA B . n B 1 144 ARG 144 157 157 ARG ARG B . n B 1 145 PRO 145 158 158 PRO PRO B . n B 1 146 LYS 146 159 159 LYS LYS B . n B 1 147 PRO 147 160 160 PRO PRO B . n B 1 148 LYS 148 161 161 LYS LYS B . n B 1 149 PRO 149 162 162 PRO PRO B . n B 1 150 GLY 150 163 163 GLY GLY B . n B 1 151 ASP 151 164 164 ASP ASP B . n B 1 152 GLY 152 165 165 GLY GLY B . n B 1 153 GLU 153 166 166 GLU GLU B . n B 1 154 PHE 154 167 167 PHE PHE B . n B 1 155 VAL 155 168 168 VAL VAL B . n B 1 156 GLU 156 169 169 GLU GLU B . n B 1 157 VAL 157 170 170 VAL VAL B . n B 1 158 ILE 158 171 171 ILE ILE B . n B 1 159 SER 159 172 172 SER SER B . n B 1 160 LEU 160 173 173 LEU LEU B . n B 1 161 PRO 161 174 174 PRO PRO B . n B 1 162 LYS 162 175 175 LYS LYS B . n B 1 163 ASN 163 176 176 ASN ASN B . n B 1 164 ASP 164 177 177 ASP ASP B . n B 1 165 LEU 165 178 178 LEU LEU B . n B 1 166 LEU 166 179 179 LEU LEU B . n B 1 167 GLN 167 180 180 GLN GLN B . n B 1 168 ARG 168 181 181 ARG ARG B . n B 1 169 LEU 169 182 182 LEU LEU B . n B 1 170 ASP 170 183 183 ASP ASP B . n B 1 171 ALA 171 184 184 ALA ALA B . n B 1 172 LEU 172 185 185 LEU LEU B . n B 1 173 VAL 173 186 186 VAL VAL B . n B 1 174 ALA 174 187 187 ALA ALA B . n B 1 175 GLU 175 188 188 GLU GLU B . n B 1 176 GLU 176 189 189 GLU GLU B . n B 1 177 HIS 177 190 190 HIS HIS B . n B 1 178 LEU 178 191 191 LEU LEU B . n B 1 179 THR 179 192 192 THR THR B . n B 1 180 VAL 180 193 193 VAL VAL B . n B 1 181 ASP 181 194 194 ASP ASP B . n B 1 182 ALA 182 195 195 ALA ALA B . n B 1 183 ARG 183 196 196 ARG ARG B . n B 1 184 VAL 184 197 197 VAL VAL B . n B 1 185 TYR 185 198 198 TYR TYR B . n B 1 186 SER 186 199 199 SER SER B . n B 1 187 TYR 187 200 200 TYR TYR B . n B 1 188 ALA 188 201 201 ALA ALA B . n B 1 189 LEU 189 202 202 LEU LEU B . n B 1 190 ALA 190 203 203 ALA ALA B . n B 1 191 LEU 191 204 204 LEU LEU B . n B 1 192 LYS 192 205 205 LYS LYS B . n B 1 193 HIS 193 206 206 HIS HIS B . n B 1 194 ALA 194 207 207 ALA ALA B . n B 1 195 ASN 195 208 208 ASN ASN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8GD 1 2 2 8GD 8GD A . D 2 8GD 1 1 1 8GD 8GD B . E 3 MN 1 209 209 MN MN B . F 3 MN 1 2 2 MN MN B . G 4 HOH 1 300 300 HOH HOH A . G 4 HOH 2 301 301 HOH HOH A . G 4 HOH 3 302 302 HOH HOH A . G 4 HOH 4 303 303 HOH HOH A . G 4 HOH 5 304 304 HOH HOH A . G 4 HOH 6 305 305 HOH HOH A . G 4 HOH 7 306 306 HOH HOH A . G 4 HOH 8 307 307 HOH HOH A . G 4 HOH 9 308 308 HOH HOH A . G 4 HOH 10 309 309 HOH HOH A . G 4 HOH 11 310 310 HOH HOH A . G 4 HOH 12 311 311 HOH HOH A . G 4 HOH 13 312 312 HOH HOH A . G 4 HOH 14 313 313 HOH HOH A . G 4 HOH 15 314 314 HOH HOH A . G 4 HOH 16 315 315 HOH HOH A . G 4 HOH 17 316 316 HOH HOH A . G 4 HOH 18 317 317 HOH HOH A . G 4 HOH 19 318 318 HOH HOH A . G 4 HOH 20 319 319 HOH HOH A . G 4 HOH 21 320 320 HOH HOH A . G 4 HOH 22 321 321 HOH HOH A . G 4 HOH 23 322 322 HOH HOH A . G 4 HOH 24 323 323 HOH HOH A . G 4 HOH 25 324 324 HOH HOH A . G 4 HOH 26 325 325 HOH HOH A . G 4 HOH 27 326 326 HOH HOH A . G 4 HOH 28 327 327 HOH HOH A . G 4 HOH 29 328 328 HOH HOH A . G 4 HOH 30 329 329 HOH HOH A . G 4 HOH 31 330 330 HOH HOH A . G 4 HOH 32 331 331 HOH HOH A . G 4 HOH 33 332 332 HOH HOH A . G 4 HOH 34 333 333 HOH HOH A . G 4 HOH 35 334 334 HOH HOH A . G 4 HOH 36 335 335 HOH HOH A . G 4 HOH 37 336 336 HOH HOH A . G 4 HOH 38 337 337 HOH HOH A . G 4 HOH 39 338 338 HOH HOH A . G 4 HOH 40 339 339 HOH HOH A . G 4 HOH 41 340 340 HOH HOH A . G 4 HOH 42 341 341 HOH HOH A . G 4 HOH 43 342 342 HOH HOH A . G 4 HOH 44 343 343 HOH HOH A . G 4 HOH 45 344 344 HOH HOH A . G 4 HOH 46 345 345 HOH HOH A . G 4 HOH 47 346 346 HOH HOH A . G 4 HOH 48 347 347 HOH HOH A . G 4 HOH 49 348 348 HOH HOH A . G 4 HOH 50 349 349 HOH HOH A . G 4 HOH 51 350 350 HOH HOH A . G 4 HOH 52 351 351 HOH HOH A . G 4 HOH 53 352 352 HOH HOH A . G 4 HOH 54 353 353 HOH HOH A . G 4 HOH 55 354 354 HOH HOH A . G 4 HOH 56 355 355 HOH HOH A . G 4 HOH 57 356 356 HOH HOH A . G 4 HOH 58 357 357 HOH HOH A . G 4 HOH 59 358 358 HOH HOH A . G 4 HOH 60 359 359 HOH HOH A . G 4 HOH 61 360 360 HOH HOH A . G 4 HOH 62 361 361 HOH HOH A . G 4 HOH 63 362 362 HOH HOH A . G 4 HOH 64 363 363 HOH HOH A . G 4 HOH 65 364 364 HOH HOH A . G 4 HOH 66 365 365 HOH HOH A . G 4 HOH 67 366 366 HOH HOH A . G 4 HOH 68 367 367 HOH HOH A . G 4 HOH 69 368 368 HOH HOH A . G 4 HOH 70 369 369 HOH HOH A . G 4 HOH 71 370 370 HOH HOH A . G 4 HOH 72 371 371 HOH HOH A . G 4 HOH 73 372 372 HOH HOH A . G 4 HOH 74 373 373 HOH HOH A . G 4 HOH 75 374 374 HOH HOH A . G 4 HOH 76 375 375 HOH HOH A . G 4 HOH 77 376 376 HOH HOH A . G 4 HOH 78 377 377 HOH HOH A . G 4 HOH 79 378 378 HOH HOH A . G 4 HOH 80 379 379 HOH HOH A . H 4 HOH 1 380 380 HOH HOH B . H 4 HOH 2 381 381 HOH HOH B . H 4 HOH 3 382 382 HOH HOH B . H 4 HOH 4 383 383 HOH HOH B . H 4 HOH 5 384 384 HOH HOH B . H 4 HOH 6 385 385 HOH HOH B . H 4 HOH 7 386 386 HOH HOH B . H 4 HOH 8 387 387 HOH HOH B . H 4 HOH 9 388 388 HOH HOH B . H 4 HOH 10 389 389 HOH HOH B . H 4 HOH 11 390 390 HOH HOH B . H 4 HOH 12 391 391 HOH HOH B . H 4 HOH 13 392 392 HOH HOH B . H 4 HOH 14 393 393 HOH HOH B . H 4 HOH 15 394 394 HOH HOH B . H 4 HOH 16 395 395 HOH HOH B . H 4 HOH 17 396 396 HOH HOH B . H 4 HOH 18 397 397 HOH HOH B . H 4 HOH 19 398 398 HOH HOH B . H 4 HOH 20 399 399 HOH HOH B . H 4 HOH 21 400 400 HOH HOH B . H 4 HOH 22 401 401 HOH HOH B . H 4 HOH 23 402 402 HOH HOH B . H 4 HOH 24 403 403 HOH HOH B . H 4 HOH 25 404 404 HOH HOH B . H 4 HOH 26 405 405 HOH HOH B . H 4 HOH 27 406 406 HOH HOH B . H 4 HOH 28 407 407 HOH HOH B . H 4 HOH 29 408 408 HOH HOH B . H 4 HOH 30 409 409 HOH HOH B . H 4 HOH 31 410 410 HOH HOH B . H 4 HOH 32 411 411 HOH HOH B . H 4 HOH 33 412 412 HOH HOH B . H 4 HOH 34 413 413 HOH HOH B . H 4 HOH 35 414 414 HOH HOH B . H 4 HOH 36 415 415 HOH HOH B . H 4 HOH 37 416 416 HOH HOH B . H 4 HOH 38 417 417 HOH HOH B . H 4 HOH 39 418 418 HOH HOH B . H 4 HOH 40 419 419 HOH HOH B . H 4 HOH 41 420 420 HOH HOH B . H 4 HOH 42 421 421 HOH HOH B . H 4 HOH 43 422 422 HOH HOH B . H 4 HOH 44 423 423 HOH HOH B . H 4 HOH 45 424 424 HOH HOH B . H 4 HOH 46 425 425 HOH HOH B . H 4 HOH 47 426 426 HOH HOH B . H 4 HOH 48 427 427 HOH HOH B . H 4 HOH 49 428 428 HOH HOH B . H 4 HOH 50 429 429 HOH HOH B . H 4 HOH 51 430 430 HOH HOH B . H 4 HOH 52 431 431 HOH HOH B . H 4 HOH 53 432 432 HOH HOH B . H 4 HOH 54 433 433 HOH HOH B . H 4 HOH 55 434 434 HOH HOH B . H 4 HOH 56 435 435 HOH HOH B . H 4 HOH 57 436 436 HOH HOH B . H 4 HOH 58 437 437 HOH HOH B . H 4 HOH 59 438 438 HOH HOH B . H 4 HOH 60 439 439 HOH HOH B . H 4 HOH 61 440 440 HOH HOH B . H 4 HOH 62 441 441 HOH HOH B . H 4 HOH 63 442 442 HOH HOH B . H 4 HOH 64 443 443 HOH HOH B . H 4 HOH 65 444 444 HOH HOH B . H 4 HOH 66 445 445 HOH HOH B . H 4 HOH 67 446 446 HOH HOH B . H 4 HOH 68 447 447 HOH HOH B . H 4 HOH 69 448 448 HOH HOH B . H 4 HOH 70 449 449 HOH HOH B . H 4 HOH 71 450 450 HOH HOH B . H 4 HOH 72 451 451 HOH HOH B . H 4 HOH 73 452 452 HOH HOH B . H 4 HOH 74 453 453 HOH HOH B . H 4 HOH 75 454 454 HOH HOH B . H 4 HOH 76 455 455 HOH HOH B . H 4 HOH 77 456 456 HOH HOH B . H 4 HOH 78 457 457 HOH HOH B . H 4 HOH 79 458 458 HOH HOH B . H 4 HOH 80 459 459 HOH HOH B . H 4 HOH 81 460 460 HOH HOH B . H 4 HOH 82 461 461 HOH HOH B . H 4 HOH 83 462 462 HOH HOH B . H 4 HOH 84 463 463 HOH HOH B . H 4 HOH 85 464 464 HOH HOH B . H 4 HOH 86 465 465 HOH HOH B . H 4 HOH 87 466 466 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6100 ? 1 MORE -45 ? 1 'SSA (A^2)' 16900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-11-09 4 'Structure model' 1 3 2013-06-05 5 'Structure model' 1 4 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Structure summary' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 CNS . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 55 ? ? -143.42 -73.84 2 1 GLN A 57 ? ? -41.64 155.74 3 1 ASP A 133 ? ? -163.54 79.15 4 1 ARG A 157 ? ? -113.03 58.74 5 1 GLU A 166 ? ? -138.60 -152.83 6 1 ASP A 177 ? ? -153.95 20.70 7 1 GLU A 189 ? ? -165.18 -64.48 8 1 SER B 24 ? ? -179.35 132.76 9 1 ASP B 133 ? ? -170.47 80.96 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 8GD 2 ? PA ? C 8GD 1 PA 2 1 N 1 A 8GD 2 ? PB ? C 8GD 1 PB 3 1 N 1 A 8GD 2 ? O1A ? C 8GD 1 O1A 4 1 N 1 A 8GD 2 ? O1B ? C 8GD 1 O1B 5 1 N 1 A 8GD 2 ? O2A ? C 8GD 1 O2A 6 1 N 1 A 8GD 2 ? O2B ? C 8GD 1 O2B 7 1 N 1 A 8GD 2 ? O3A ? C 8GD 1 O3A 8 1 N 1 A 8GD 2 ? O3B ? C 8GD 1 O3B 9 1 N 1 A 8GD 2 ? "O5'" ? C 8GD 1 "O5'" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8GD N1 N N N 1 8GD C2 C N N 2 8GD N2 N N N 3 8GD N3 N N N 4 8GD C4 C N N 5 8GD C5 C N N 6 8GD C6 C N N 7 8GD O6 O N N 8 8GD N7 N N N 9 8GD C8 C N N 10 8GD O8 O N N 11 8GD N9 N N N 12 8GD PA P N N 13 8GD PB P N N 14 8GD "C1'" C N R 15 8GD O1A O N N 16 8GD O1B O N N 17 8GD "C2'" C N N 18 8GD O2A O N N 19 8GD O2B O N N 20 8GD "C3'" C N S 21 8GD "O3'" O N N 22 8GD O3A O N N 23 8GD O3B O N N 24 8GD "C4'" C N R 25 8GD "O4'" O N N 26 8GD "C5'" C N N 27 8GD "O5'" O N N 28 8GD HN1 H N N 29 8GD HN2 H N N 30 8GD HN2A H N N 31 8GD HN7 H N N 32 8GD "H1'" H N N 33 8GD HO1B H N N 34 8GD "H2'" H N N 35 8GD "H2'A" H N N 36 8GD HO2A H N N 37 8GD "H3'" H N N 38 8GD "HO3'" H N N 39 8GD HO3B H N N 40 8GD "H4'" H N N 41 8GD "H5'" H N N 42 8GD "H5'A" H N N 43 ALA N N N N 44 ALA CA C N S 45 ALA C C N N 46 ALA O O N N 47 ALA CB C N N 48 ALA OXT O N N 49 ALA H H N N 50 ALA H2 H N N 51 ALA HA H N N 52 ALA HB1 H N N 53 ALA HB2 H N N 54 ALA HB3 H N N 55 ALA HXT H N N 56 ARG N N N N 57 ARG CA C N S 58 ARG C C N N 59 ARG O O N N 60 ARG CB C N N 61 ARG CG C N N 62 ARG CD C N N 63 ARG NE N N N 64 ARG CZ C N N 65 ARG NH1 N N N 66 ARG NH2 N N N 67 ARG OXT O N N 68 ARG H H N N 69 ARG H2 H N N 70 ARG HA H N N 71 ARG HB2 H N N 72 ARG HB3 H N N 73 ARG HG2 H N N 74 ARG HG3 H N N 75 ARG HD2 H N N 76 ARG HD3 H N N 77 ARG HE H N N 78 ARG HH11 H N N 79 ARG HH12 H N N 80 ARG HH21 H N N 81 ARG HH22 H N N 82 ARG HXT H N N 83 ASN N N N N 84 ASN CA C N S 85 ASN C C N N 86 ASN O O N N 87 ASN CB C N N 88 ASN CG C N N 89 ASN OD1 O N N 90 ASN ND2 N N N 91 ASN OXT O N N 92 ASN H H N N 93 ASN H2 H N N 94 ASN HA H N N 95 ASN HB2 H N N 96 ASN HB3 H N N 97 ASN HD21 H N N 98 ASN HD22 H N N 99 ASN HXT H N N 100 ASP N N N N 101 ASP CA C N S 102 ASP C C N N 103 ASP O O N N 104 ASP CB C N N 105 ASP CG C N N 106 ASP OD1 O N N 107 ASP OD2 O N N 108 ASP OXT O N N 109 ASP H H N N 110 ASP H2 H N N 111 ASP HA H N N 112 ASP HB2 H N N 113 ASP HB3 H N N 114 ASP HD2 H N N 115 ASP HXT H N N 116 CYS N N N N 117 CYS CA C N R 118 CYS C C N N 119 CYS O O N N 120 CYS CB C N N 121 CYS SG S N N 122 CYS OXT O N N 123 CYS H H N N 124 CYS H2 H N N 125 CYS HA H N N 126 CYS HB2 H N N 127 CYS HB3 H N N 128 CYS HG H N N 129 CYS HXT H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 MN MN MN N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TRP N N N N 365 TRP CA C N S 366 TRP C C N N 367 TRP O O N N 368 TRP CB C N N 369 TRP CG C Y N 370 TRP CD1 C Y N 371 TRP CD2 C Y N 372 TRP NE1 N Y N 373 TRP CE2 C Y N 374 TRP CE3 C Y N 375 TRP CZ2 C Y N 376 TRP CZ3 C Y N 377 TRP CH2 C Y N 378 TRP OXT O N N 379 TRP H H N N 380 TRP H2 H N N 381 TRP HA H N N 382 TRP HB2 H N N 383 TRP HB3 H N N 384 TRP HD1 H N N 385 TRP HE1 H N N 386 TRP HE3 H N N 387 TRP HZ2 H N N 388 TRP HZ3 H N N 389 TRP HH2 H N N 390 TRP HXT H N N 391 TYR N N N N 392 TYR CA C N S 393 TYR C C N N 394 TYR O O N N 395 TYR CB C N N 396 TYR CG C Y N 397 TYR CD1 C Y N 398 TYR CD2 C Y N 399 TYR CE1 C Y N 400 TYR CE2 C Y N 401 TYR CZ C Y N 402 TYR OH O N N 403 TYR OXT O N N 404 TYR H H N N 405 TYR H2 H N N 406 TYR HA H N N 407 TYR HB2 H N N 408 TYR HB3 H N N 409 TYR HD1 H N N 410 TYR HD2 H N N 411 TYR HE1 H N N 412 TYR HE2 H N N 413 TYR HH H N N 414 TYR HXT H N N 415 VAL N N N N 416 VAL CA C N S 417 VAL C C N N 418 VAL O O N N 419 VAL CB C N N 420 VAL CG1 C N N 421 VAL CG2 C N N 422 VAL OXT O N N 423 VAL H H N N 424 VAL H2 H N N 425 VAL HA H N N 426 VAL HB H N N 427 VAL HG11 H N N 428 VAL HG12 H N N 429 VAL HG13 H N N 430 VAL HG21 H N N 431 VAL HG22 H N N 432 VAL HG23 H N N 433 VAL HXT H N N 434 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8GD N1 C2 sing N N 1 8GD N1 C6 sing N N 2 8GD C2 N2 sing N N 3 8GD C2 N3 doub N N 4 8GD N3 C4 sing N N 5 8GD C4 C5 doub N N 6 8GD C4 N9 sing N N 7 8GD C5 C6 sing N N 8 8GD C5 N7 sing N N 9 8GD C6 O6 doub N N 10 8GD N7 C8 sing N N 11 8GD C8 O8 doub N N 12 8GD C8 N9 sing N N 13 8GD N9 "C1'" sing N N 14 8GD PA O1A doub N N 15 8GD PA O2A sing N N 16 8GD PA O3A sing N N 17 8GD PA "O5'" sing N N 18 8GD PB O1B sing N N 19 8GD PB O2B doub N N 20 8GD PB O3A sing N N 21 8GD PB O3B sing N N 22 8GD "C1'" "C2'" sing N N 23 8GD "C1'" "O4'" sing N N 24 8GD "C2'" "C3'" sing N N 25 8GD "C3'" "O3'" sing N N 26 8GD "C3'" "C4'" sing N N 27 8GD "C4'" "O4'" sing N N 28 8GD "C4'" "C5'" sing N N 29 8GD "C5'" "O5'" sing N N 30 8GD N1 HN1 sing N N 31 8GD N2 HN2 sing N N 32 8GD N2 HN2A sing N N 33 8GD N7 HN7 sing N N 34 8GD "C1'" "H1'" sing N N 35 8GD O1B HO1B sing N N 36 8GD "C2'" "H2'" sing N N 37 8GD "C2'" "H2'A" sing N N 38 8GD O2A HO2A sing N N 39 8GD "C3'" "H3'" sing N N 40 8GD "O3'" "HO3'" sing N N 41 8GD O3B HO3B sing N N 42 8GD "C4'" "H4'" sing N N 43 8GD "C5'" "H5'" sing N N 44 8GD "C5'" "H5'A" sing N N 45 ALA N CA sing N N 46 ALA N H sing N N 47 ALA N H2 sing N N 48 ALA CA C sing N N 49 ALA CA CB sing N N 50 ALA CA HA sing N N 51 ALA C O doub N N 52 ALA C OXT sing N N 53 ALA CB HB1 sing N N 54 ALA CB HB2 sing N N 55 ALA CB HB3 sing N N 56 ALA OXT HXT sing N N 57 ARG N CA sing N N 58 ARG N H sing N N 59 ARG N H2 sing N N 60 ARG CA C sing N N 61 ARG CA CB sing N N 62 ARG CA HA sing N N 63 ARG C O doub N N 64 ARG C OXT sing N N 65 ARG CB CG sing N N 66 ARG CB HB2 sing N N 67 ARG CB HB3 sing N N 68 ARG CG CD sing N N 69 ARG CG HG2 sing N N 70 ARG CG HG3 sing N N 71 ARG CD NE sing N N 72 ARG CD HD2 sing N N 73 ARG CD HD3 sing N N 74 ARG NE CZ sing N N 75 ARG NE HE sing N N 76 ARG CZ NH1 sing N N 77 ARG CZ NH2 doub N N 78 ARG NH1 HH11 sing N N 79 ARG NH1 HH12 sing N N 80 ARG NH2 HH21 sing N N 81 ARG NH2 HH22 sing N N 82 ARG OXT HXT sing N N 83 ASN N CA sing N N 84 ASN N H sing N N 85 ASN N H2 sing N N 86 ASN CA C sing N N 87 ASN CA CB sing N N 88 ASN CA HA sing N N 89 ASN C O doub N N 90 ASN C OXT sing N N 91 ASN CB CG sing N N 92 ASN CB HB2 sing N N 93 ASN CB HB3 sing N N 94 ASN CG OD1 doub N N 95 ASN CG ND2 sing N N 96 ASN ND2 HD21 sing N N 97 ASN ND2 HD22 sing N N 98 ASN OXT HXT sing N N 99 ASP N CA sing N N 100 ASP N H sing N N 101 ASP N H2 sing N N 102 ASP CA C sing N N 103 ASP CA CB sing N N 104 ASP CA HA sing N N 105 ASP C O doub N N 106 ASP C OXT sing N N 107 ASP CB CG sing N N 108 ASP CB HB2 sing N N 109 ASP CB HB3 sing N N 110 ASP CG OD1 doub N N 111 ASP CG OD2 sing N N 112 ASP OD2 HD2 sing N N 113 ASP OXT HXT sing N N 114 CYS N CA sing N N 115 CYS N H sing N N 116 CYS N H2 sing N N 117 CYS CA C sing N N 118 CYS CA CB sing N N 119 CYS CA HA sing N N 120 CYS C O doub N N 121 CYS C OXT sing N N 122 CYS CB SG sing N N 123 CYS CB HB2 sing N N 124 CYS CB HB3 sing N N 125 CYS SG HG sing N N 126 CYS OXT HXT sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MET N CA sing N N 263 MET N H sing N N 264 MET N H2 sing N N 265 MET CA C sing N N 266 MET CA CB sing N N 267 MET CA HA sing N N 268 MET C O doub N N 269 MET C OXT sing N N 270 MET CB CG sing N N 271 MET CB HB2 sing N N 272 MET CB HB3 sing N N 273 MET CG SD sing N N 274 MET CG HG2 sing N N 275 MET CG HG3 sing N N 276 MET SD CE sing N N 277 MET CE HE1 sing N N 278 MET CE HE2 sing N N 279 MET CE HE3 sing N N 280 MET OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TYR N CA sing N N 379 TYR N H sing N N 380 TYR N H2 sing N N 381 TYR CA C sing N N 382 TYR CA CB sing N N 383 TYR CA HA sing N N 384 TYR C O doub N N 385 TYR C OXT sing N N 386 TYR CB CG sing N N 387 TYR CB HB2 sing N N 388 TYR CB HB3 sing N N 389 TYR CG CD1 doub Y N 390 TYR CG CD2 sing Y N 391 TYR CD1 CE1 sing Y N 392 TYR CD1 HD1 sing N N 393 TYR CD2 CE2 doub Y N 394 TYR CD2 HD2 sing N N 395 TYR CE1 CZ doub Y N 396 TYR CE1 HE1 sing N N 397 TYR CE2 CZ sing Y N 398 TYR CE2 HE2 sing N N 399 TYR CZ OH sing N N 400 TYR OH HH sing N N 401 TYR OXT HXT sing N N 402 VAL N CA sing N N 403 VAL N H sing N N 404 VAL N H2 sing N N 405 VAL CA C sing N N 406 VAL CA CB sing N N 407 VAL CA HA sing N N 408 VAL C O doub N N 409 VAL C OXT sing N N 410 VAL CB CG1 sing N N 411 VAL CB CG2 sing N N 412 VAL CB HB sing N N 413 VAL CG1 HG11 sing N N 414 VAL CG1 HG12 sing N N 415 VAL CG1 HG13 sing N N 416 VAL CG2 HG21 sing N N 417 VAL CG2 HG22 sing N N 418 VAL CG2 HG23 sing N N 419 VAL OXT HXT sing N N 420 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate) ; 8GD 3 'MANGANESE (II) ION' MN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3L85 _pdbx_initial_refinement_model.details ? #