data_3ACD # _entry.id 3ACD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ACD pdb_00003acd 10.2210/pdb3acd/pdb RCSB RCSB029079 ? ? WWPDB D_1000029079 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2010-02-23 _pdbx_database_PDB_obs_spr.pdb_id 3ACD _pdbx_database_PDB_obs_spr.replace_pdb_id 2YWU _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3ACB . unspecified PDB 3ACC . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ACD _pdbx_database_status.recvd_initial_deposition_date 2009-12-30 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kanagawa, M.' 1 'Baba, S.' 2 'Hirotsu, K.' 3 'Kuramitsu, S.' 4 'Yokoyama, S.' 5 'Kawai, G.' 6 'Sampei, G.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Structures of hypoxanthine-guanine phosphoribosyltransferase (TTHA0220) from Thermus thermophilus HB8.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 66 _citation.page_first 893 _citation.page_last 898 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20693661 _citation.pdbx_database_id_DOI 10.1107/S1744309110023079 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kanagawa, M.' 1 ? primary 'Baba, S.' 2 ? primary 'Ebihara, A.' 3 ? primary 'Shinkai, A.' 4 ? primary 'Hirotsu, K.' 5 ? primary 'Mega, R.' 6 ? primary 'Kim, K.' 7 ? primary 'Kuramitsu, S.' 8 ? primary 'Sampei, G.' 9 ? primary 'Kawai, G.' 10 ? # _cell.entry_id 3ACD _cell.length_a 67.344 _cell.length_b 67.344 _cell.length_c 152.151 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3ACD _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypoxanthine-guanine phosphoribosyltransferase' 20193.264 1 2.4.2.8 ? ? ? 2 non-polymer syn 'INOSINIC ACID' 348.206 1 ? ? ? ? 3 non-polymer syn '1,4-DIETHYLENE DIOXIDE' 88.105 2 ? ? ? ? 4 water nat water 18.015 185 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISSYGNAFKSS GEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYG LDRAQFDRNLPFITSIRPEEE ; _entity_poly.pdbx_seq_one_letter_code_can ;MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISSYGNAFKSS GEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYG LDRAQFDRNLPFITSIRPEEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 GLY n 1 4 MET n 1 5 PHE n 1 6 THR n 1 7 PRO n 1 8 GLY n 1 9 ASN n 1 10 GLY n 1 11 PRO n 1 12 VAL n 1 13 GLN n 1 14 ILE n 1 15 SER n 1 16 ALA n 1 17 GLU n 1 18 ALA n 1 19 ILE n 1 20 LYS n 1 21 LYS n 1 22 ARG n 1 23 VAL n 1 24 GLU n 1 25 GLU n 1 26 LEU n 1 27 GLY n 1 28 GLY n 1 29 GLU n 1 30 ILE n 1 31 ALA n 1 32 ARG n 1 33 ASP n 1 34 TYR n 1 35 GLN n 1 36 GLY n 1 37 LYS n 1 38 THR n 1 39 PRO n 1 40 HIS n 1 41 LEU n 1 42 ILE n 1 43 CYS n 1 44 VAL n 1 45 LEU n 1 46 ASN n 1 47 GLY n 1 48 ALA n 1 49 PHE n 1 50 ILE n 1 51 PHE n 1 52 MET n 1 53 ALA n 1 54 ASP n 1 55 LEU n 1 56 VAL n 1 57 ARG n 1 58 ALA n 1 59 ILE n 1 60 PRO n 1 61 LEU n 1 62 PRO n 1 63 LEU n 1 64 THR n 1 65 MET n 1 66 ASP n 1 67 PHE n 1 68 ILE n 1 69 ALA n 1 70 ILE n 1 71 SER n 1 72 SER n 1 73 TYR n 1 74 GLY n 1 75 ASN n 1 76 ALA n 1 77 PHE n 1 78 LYS n 1 79 SER n 1 80 SER n 1 81 GLY n 1 82 GLU n 1 83 VAL n 1 84 GLU n 1 85 LEU n 1 86 LEU n 1 87 LYS n 1 88 ASP n 1 89 LEU n 1 90 ARG n 1 91 LEU n 1 92 PRO n 1 93 ILE n 1 94 HIS n 1 95 GLY n 1 96 ARG n 1 97 ASP n 1 98 VAL n 1 99 ILE n 1 100 VAL n 1 101 VAL n 1 102 GLU n 1 103 ASP n 1 104 ILE n 1 105 VAL n 1 106 ASP n 1 107 THR n 1 108 GLY n 1 109 LEU n 1 110 THR n 1 111 LEU n 1 112 SER n 1 113 TYR n 1 114 LEU n 1 115 LEU n 1 116 ASP n 1 117 TYR n 1 118 LEU n 1 119 GLU n 1 120 ALA n 1 121 ARG n 1 122 LYS n 1 123 PRO n 1 124 ALA n 1 125 SER n 1 126 VAL n 1 127 ARG n 1 128 VAL n 1 129 ALA n 1 130 ALA n 1 131 LEU n 1 132 LEU n 1 133 SER n 1 134 LYS n 1 135 PRO n 1 136 SER n 1 137 ARG n 1 138 ARG n 1 139 GLN n 1 140 VAL n 1 141 GLU n 1 142 VAL n 1 143 PRO n 1 144 ILE n 1 145 HIS n 1 146 TYR n 1 147 LEU n 1 148 GLY n 1 149 PHE n 1 150 GLU n 1 151 ILE n 1 152 GLU n 1 153 ASP n 1 154 ALA n 1 155 TYR n 1 156 VAL n 1 157 TYR n 1 158 GLY n 1 159 TYR n 1 160 GLY n 1 161 LEU n 1 162 ASP n 1 163 ARG n 1 164 ALA n 1 165 GLN n 1 166 PHE n 1 167 ASP n 1 168 ARG n 1 169 ASN n 1 170 LEU n 1 171 PRO n 1 172 PHE n 1 173 ILE n 1 174 THR n 1 175 SER n 1 176 ILE n 1 177 ARG n 1 178 PRO n 1 179 GLU n 1 180 GLU n 1 181 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TTHA0220 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-11A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SLS3_THET8 _struct_ref.pdbx_db_accession Q5SLS3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISSYGNAFKSS GEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYG LDRAQFDRNLPFITSIRPEEE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ACD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 181 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5SLS3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 181 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DIO non-polymer . '1,4-DIETHYLENE DIOXIDE' ? 'C4 H8 O2' 88.105 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMP non-polymer n 'INOSINIC ACID' ? 'C10 H13 N4 O8 P' 348.206 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ACD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_percent_sol 50.12 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '15% Glycerol, 29% Dioxane, 0.01M IMP, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2007-03-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Fixed exit Si double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3ACD _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.89 _reflns.number_obs 17152 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 13.1 _reflns.pdbx_redundancy 10.7 _reflns.pdbx_netI_over_sigmaI ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.89 _reflns_shell.d_res_low 1.96 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.141 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 9.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1583 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3ACD _refine.ls_number_reflns_obs 16907 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 192076.39 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.27 _refine.ls_d_res_high 1.89 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.199 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.235 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 1684 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 23.2 _refine.aniso_B[1][1] 2.03 _refine.aniso_B[2][2] 2.03 _refine.aniso_B[3][3] -4.07 _refine.aniso_B[1][2] 0.64 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.414341 _refine.solvent_model_param_bsol 59.2263 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 3ACB _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3ACD _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs 0.06 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.15 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1295 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 185 _refine_hist.number_atoms_total 1515 _refine_hist.d_res_high 1.89 _refine_hist.d_res_low 38.27 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.9 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.82 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.89 _refine_ls_shell.d_res_low 2.01 _refine_ls_shell.number_reflns_R_work 2391 _refine_ls_shell.R_factor_R_work 0.203 _refine_ls_shell.percent_reflns_obs 96.3 _refine_ls_shell.R_factor_R_free 0.268 _refine_ls_shell.R_factor_R_free_error 0.016 _refine_ls_shell.percent_reflns_R_free 10.3 _refine_ls_shell.number_reflns_R_free 276 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water_rep.top 'X-RAY DIFFRACTION' 3 imp.param imp.top 'X-RAY DIFFRACTION' 4 dio.param dio.top 'X-RAY DIFFRACTION' 5 cis_peptide.param ? # _struct.entry_id 3ACD _struct.title 'Crystal structure of hypoxanthine-guanine phosphoribosyltransferase with IMP from Thermus thermophilus HB8' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ACD _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Rossmann fold, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 15 ? TYR A 34 ? SER A 15 TYR A 34 1 ? 20 HELX_P HELX_P2 2 ALA A 48 ? ARG A 57 ? ALA A 48 ARG A 57 1 ? 10 HELX_P HELX_P3 3 GLY A 108 ? ALA A 120 ? GLY A 108 ALA A 120 1 ? 13 HELX_P HELX_P4 4 PRO A 135 ? ARG A 138 ? PRO A 135 ARG A 138 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 45 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 45 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASN _struct_mon_prot_cis.pdbx_label_seq_id_2 46 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASN _struct_mon_prot_cis.pdbx_auth_seq_id_2 46 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 64 ? ALA A 69 ? THR A 64 ALA A 69 A 2 HIS A 40 ? LEU A 45 ? HIS A 40 LEU A 45 A 3 ASP A 97 ? VAL A 105 ? ASP A 97 VAL A 105 A 4 SER A 125 ? SER A 133 ? SER A 125 SER A 133 A 5 TYR A 146 ? GLU A 150 ? TYR A 146 GLU A 150 B 1 VAL A 156 ? TYR A 157 ? VAL A 156 TYR A 157 B 2 THR A 174 ? SER A 175 ? THR A 174 SER A 175 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 68 ? O ILE A 68 N LEU A 45 ? N LEU A 45 A 2 3 N ILE A 42 ? N ILE A 42 O VAL A 101 ? O VAL A 101 A 3 4 N VAL A 100 ? N VAL A 100 O ALA A 129 ? O ALA A 129 A 4 5 N ALA A 130 ? N ALA A 130 O TYR A 146 ? O TYR A 146 B 1 2 N TYR A 157 ? N TYR A 157 O THR A 174 ? O THR A 174 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IMP 552 ? 20 'BINDING SITE FOR RESIDUE IMP A 552' AC2 Software A DIO 591 ? 5 'BINDING SITE FOR RESIDUE DIO A 591' AC3 Software A DIO 592 ? 7 'BINDING SITE FOR RESIDUE DIO A 592' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 GLU A 102 ? GLU A 102 . ? 1_555 ? 2 AC1 20 ASP A 103 ? ASP A 103 . ? 1_555 ? 3 AC1 20 ILE A 104 ? ILE A 104 . ? 1_555 ? 4 AC1 20 ASP A 106 ? ASP A 106 . ? 1_555 ? 5 AC1 20 THR A 107 ? THR A 107 . ? 1_555 ? 6 AC1 20 GLY A 108 ? GLY A 108 . ? 1_555 ? 7 AC1 20 LEU A 109 ? LEU A 109 . ? 1_555 ? 8 AC1 20 THR A 110 ? THR A 110 . ? 1_555 ? 9 AC1 20 LYS A 134 ? LYS A 134 . ? 1_555 ? 10 AC1 20 ALA A 154 ? ALA A 154 . ? 1_555 ? 11 AC1 20 TYR A 155 ? TYR A 155 . ? 1_555 ? 12 AC1 20 VAL A 156 ? VAL A 156 . ? 1_555 ? 13 AC1 20 HOH E . ? HOH A 609 . ? 1_555 ? 14 AC1 20 HOH E . ? HOH A 612 . ? 1_555 ? 15 AC1 20 HOH E . ? HOH A 634 . ? 1_555 ? 16 AC1 20 HOH E . ? HOH A 639 . ? 1_555 ? 17 AC1 20 HOH E . ? HOH A 640 . ? 1_555 ? 18 AC1 20 HOH E . ? HOH A 655 . ? 1_555 ? 19 AC1 20 HOH E . ? HOH A 696 . ? 1_555 ? 20 AC1 20 HOH E . ? HOH A 720 . ? 1_555 ? 21 AC2 5 ASP A 33 ? ASP A 33 . ? 1_555 ? 22 AC2 5 TYR A 34 ? TYR A 34 . ? 1_555 ? 23 AC2 5 LYS A 37 ? LYS A 37 . ? 1_555 ? 24 AC2 5 SER A 125 ? SER A 125 . ? 1_555 ? 25 AC2 5 ARG A 127 ? ARG A 127 . ? 1_555 ? 26 AC3 7 MET A 4 ? MET A 4 . ? 10_665 ? 27 AC3 7 PHE A 5 ? PHE A 5 . ? 10_665 ? 28 AC3 7 PRO A 60 ? PRO A 60 . ? 1_555 ? 29 AC3 7 LEU A 61 ? LEU A 61 . ? 1_555 ? 30 AC3 7 PRO A 62 ? PRO A 62 . ? 1_555 ? 31 AC3 7 LEU A 170 ? LEU A 170 . ? 10_665 ? 32 AC3 7 HOH E . ? HOH A 631 . ? 10_665 ? # _database_PDB_matrix.entry_id 3ACD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ACD _atom_sites.fract_transf_matrix[1][1] 0.014849 _atom_sites.fract_transf_matrix[1][2] 0.008573 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017146 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006572 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 LYS 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 MET 4 4 4 MET MET A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 SER 72 72 ? ? ? A . n A 1 73 TYR 73 73 ? ? ? A . n A 1 74 GLY 74 74 ? ? ? A . n A 1 75 ASN 75 75 ? ? ? A . n A 1 76 ALA 76 76 ? ? ? A . n A 1 77 PHE 77 77 ? ? ? A . n A 1 78 LYS 78 78 ? ? ? A . n A 1 79 SER 79 79 ? ? ? A . n A 1 80 SER 80 80 ? ? ? A . n A 1 81 GLY 81 81 ? ? ? A . n A 1 82 GLU 82 82 ? ? ? A . n A 1 83 VAL 83 83 ? ? ? A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 PRO 135 135 135 PRO PRO A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 PRO 143 143 143 PRO PRO A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 HIS 145 145 145 HIS HIS A . n A 1 146 TYR 146 146 146 TYR TYR A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 GLU 152 152 152 GLU GLU A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 TYR 155 155 155 TYR TYR A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 TYR 159 159 159 TYR TYR A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 ARG 163 163 163 ARG ARG A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 GLN 165 165 165 GLN GLN A . n A 1 166 PHE 166 166 166 PHE PHE A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 PRO 171 171 171 PRO PRO A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 GLU 180 180 ? ? ? A . n A 1 181 GLU 181 181 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP 1 552 552 IMP IMP A . C 3 DIO 1 591 591 DIO DIO A . D 3 DIO 1 592 592 DIO DIO A . E 4 HOH 1 593 593 HOH HOH A . E 4 HOH 2 594 594 HOH HOH A . E 4 HOH 3 595 595 HOH HOH A . E 4 HOH 4 596 596 HOH HOH A . E 4 HOH 5 597 597 HOH HOH A . E 4 HOH 6 598 598 HOH HOH A . E 4 HOH 7 599 599 HOH HOH A . E 4 HOH 8 600 600 HOH HOH A . E 4 HOH 9 601 601 HOH HOH A . E 4 HOH 10 602 602 HOH HOH A . E 4 HOH 11 603 603 HOH HOH A . E 4 HOH 12 604 604 HOH HOH A . E 4 HOH 13 605 605 HOH HOH A . E 4 HOH 14 606 606 HOH HOH A . E 4 HOH 15 607 607 HOH HOH A . E 4 HOH 16 608 608 HOH HOH A . E 4 HOH 17 609 609 HOH HOH A . E 4 HOH 18 610 610 HOH HOH A . E 4 HOH 19 611 611 HOH HOH A . E 4 HOH 20 612 612 HOH HOH A . E 4 HOH 21 613 613 HOH HOH A . E 4 HOH 22 614 614 HOH HOH A . E 4 HOH 23 615 615 HOH HOH A . E 4 HOH 24 616 616 HOH HOH A . E 4 HOH 25 617 617 HOH HOH A . E 4 HOH 26 618 618 HOH HOH A . E 4 HOH 27 619 619 HOH HOH A . E 4 HOH 28 620 620 HOH HOH A . E 4 HOH 29 621 621 HOH HOH A . E 4 HOH 30 622 622 HOH HOH A . E 4 HOH 31 623 623 HOH HOH A . E 4 HOH 32 624 624 HOH HOH A . E 4 HOH 33 625 625 HOH HOH A . E 4 HOH 34 626 626 HOH HOH A . E 4 HOH 35 627 627 HOH HOH A . E 4 HOH 36 628 628 HOH HOH A . E 4 HOH 37 629 629 HOH HOH A . E 4 HOH 38 630 630 HOH HOH A . E 4 HOH 39 631 631 HOH HOH A . E 4 HOH 40 632 632 HOH HOH A . E 4 HOH 41 633 633 HOH HOH A . E 4 HOH 42 634 634 HOH HOH A . E 4 HOH 43 635 635 HOH HOH A . E 4 HOH 44 636 636 HOH HOH A . E 4 HOH 45 637 637 HOH HOH A . E 4 HOH 46 638 638 HOH HOH A . E 4 HOH 47 639 639 HOH HOH A . E 4 HOH 48 640 640 HOH HOH A . E 4 HOH 49 641 641 HOH HOH A . E 4 HOH 50 642 642 HOH HOH A . E 4 HOH 51 643 643 HOH HOH A . E 4 HOH 52 644 644 HOH HOH A . E 4 HOH 53 645 645 HOH HOH A . E 4 HOH 54 646 646 HOH HOH A . E 4 HOH 55 647 647 HOH HOH A . E 4 HOH 56 648 648 HOH HOH A . E 4 HOH 57 649 649 HOH HOH A . E 4 HOH 58 650 650 HOH HOH A . E 4 HOH 59 651 651 HOH HOH A . E 4 HOH 60 652 652 HOH HOH A . E 4 HOH 61 653 653 HOH HOH A . E 4 HOH 62 654 654 HOH HOH A . E 4 HOH 63 655 655 HOH HOH A . E 4 HOH 64 656 656 HOH HOH A . E 4 HOH 65 657 657 HOH HOH A . E 4 HOH 66 658 658 HOH HOH A . E 4 HOH 67 659 659 HOH HOH A . E 4 HOH 68 660 660 HOH HOH A . E 4 HOH 69 661 661 HOH HOH A . E 4 HOH 70 662 662 HOH HOH A . E 4 HOH 71 663 663 HOH HOH A . E 4 HOH 72 664 664 HOH HOH A . E 4 HOH 73 665 665 HOH HOH A . E 4 HOH 74 666 666 HOH HOH A . E 4 HOH 75 667 667 HOH HOH A . E 4 HOH 76 668 668 HOH HOH A . E 4 HOH 77 669 669 HOH HOH A . E 4 HOH 78 670 670 HOH HOH A . E 4 HOH 79 671 671 HOH HOH A . E 4 HOH 80 672 672 HOH HOH A . E 4 HOH 81 673 673 HOH HOH A . E 4 HOH 82 674 674 HOH HOH A . E 4 HOH 83 675 675 HOH HOH A . E 4 HOH 84 676 676 HOH HOH A . E 4 HOH 85 677 677 HOH HOH A . E 4 HOH 86 678 678 HOH HOH A . E 4 HOH 87 679 679 HOH HOH A . E 4 HOH 88 680 680 HOH HOH A . E 4 HOH 89 681 681 HOH HOH A . E 4 HOH 90 682 682 HOH HOH A . E 4 HOH 91 683 683 HOH HOH A . E 4 HOH 92 684 684 HOH HOH A . E 4 HOH 93 685 685 HOH HOH A . E 4 HOH 94 686 686 HOH HOH A . E 4 HOH 95 687 687 HOH HOH A . E 4 HOH 96 688 688 HOH HOH A . E 4 HOH 97 689 689 HOH HOH A . E 4 HOH 98 690 690 HOH HOH A . E 4 HOH 99 691 691 HOH HOH A . E 4 HOH 100 692 692 HOH HOH A . E 4 HOH 101 693 693 HOH HOH A . E 4 HOH 102 694 694 HOH HOH A . E 4 HOH 103 695 695 HOH HOH A . E 4 HOH 104 696 696 HOH HOH A . E 4 HOH 105 697 697 HOH HOH A . E 4 HOH 106 698 698 HOH HOH A . E 4 HOH 107 700 700 HOH HOH A . E 4 HOH 108 701 701 HOH HOH A . E 4 HOH 109 702 702 HOH HOH A . E 4 HOH 110 703 703 HOH HOH A . E 4 HOH 111 704 704 HOH HOH A . E 4 HOH 112 705 705 HOH HOH A . E 4 HOH 113 706 706 HOH HOH A . E 4 HOH 114 707 707 HOH HOH A . E 4 HOH 115 708 708 HOH HOH A . E 4 HOH 116 709 709 HOH HOH A . E 4 HOH 117 710 710 HOH HOH A . E 4 HOH 118 711 711 HOH HOH A . E 4 HOH 119 712 712 HOH HOH A . E 4 HOH 120 713 713 HOH HOH A . E 4 HOH 121 714 714 HOH HOH A . E 4 HOH 122 715 715 HOH HOH A . E 4 HOH 123 716 716 HOH HOH A . E 4 HOH 124 717 717 HOH HOH A . E 4 HOH 125 718 718 HOH HOH A . E 4 HOH 126 719 719 HOH HOH A . E 4 HOH 127 720 720 HOH HOH A . E 4 HOH 128 721 721 HOH HOH A . E 4 HOH 129 722 722 HOH HOH A . E 4 HOH 130 723 723 HOH HOH A . E 4 HOH 131 724 724 HOH HOH A . E 4 HOH 132 725 725 HOH HOH A . E 4 HOH 133 726 726 HOH HOH A . E 4 HOH 134 727 727 HOH HOH A . E 4 HOH 135 728 728 HOH HOH A . E 4 HOH 136 729 729 HOH HOH A . E 4 HOH 137 730 730 HOH HOH A . E 4 HOH 138 731 731 HOH HOH A . E 4 HOH 139 732 732 HOH HOH A . E 4 HOH 140 733 733 HOH HOH A . E 4 HOH 141 734 734 HOH HOH A . E 4 HOH 142 735 735 HOH HOH A . E 4 HOH 143 736 736 HOH HOH A . E 4 HOH 144 737 737 HOH HOH A . E 4 HOH 145 738 738 HOH HOH A . E 4 HOH 146 739 739 HOH HOH A . E 4 HOH 147 740 740 HOH HOH A . E 4 HOH 148 741 741 HOH HOH A . E 4 HOH 149 742 742 HOH HOH A . E 4 HOH 150 743 743 HOH HOH A . E 4 HOH 151 744 744 HOH HOH A . E 4 HOH 152 745 745 HOH HOH A . E 4 HOH 153 746 746 HOH HOH A . E 4 HOH 154 747 747 HOH HOH A . E 4 HOH 155 748 748 HOH HOH A . E 4 HOH 156 749 749 HOH HOH A . E 4 HOH 157 750 750 HOH HOH A . E 4 HOH 158 751 751 HOH HOH A . E 4 HOH 159 752 752 HOH HOH A . E 4 HOH 160 753 753 HOH HOH A . E 4 HOH 161 754 754 HOH HOH A . E 4 HOH 162 755 755 HOH HOH A . E 4 HOH 163 756 756 HOH HOH A . E 4 HOH 164 757 757 HOH HOH A . E 4 HOH 165 758 758 HOH HOH A . E 4 HOH 166 759 759 HOH HOH A . E 4 HOH 167 760 760 HOH HOH A . E 4 HOH 168 761 761 HOH HOH A . E 4 HOH 169 762 762 HOH HOH A . E 4 HOH 170 763 763 HOH HOH A . E 4 HOH 171 764 764 HOH HOH A . E 4 HOH 172 765 765 HOH HOH A . E 4 HOH 173 766 766 HOH HOH A . E 4 HOH 174 767 767 HOH HOH A . E 4 HOH 175 768 768 HOH HOH A . E 4 HOH 176 769 769 HOH HOH A . E 4 HOH 177 770 770 HOH HOH A . E 4 HOH 178 771 771 HOH HOH A . E 4 HOH 179 772 772 HOH HOH A . E 4 HOH 180 773 773 HOH HOH A . E 4 HOH 181 774 774 HOH HOH A . E 4 HOH 182 775 775 HOH HOH A . E 4 HOH 183 776 776 HOH HOH A . E 4 HOH 184 777 777 HOH HOH A . E 4 HOH 185 778 778 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3030 ? 1 MORE -23 ? 1 'SSA (A^2)' 14240 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 33.6720000000 -0.8660254038 -0.5000000000 0.0000000000 58.3216147925 0.0000000000 0.0000000000 -1.0000000000 25.3585000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 106 ? ? -102.42 -94.84 2 1 LYS A 134 ? ? -115.87 76.19 3 1 GLN A 165 ? ? 77.00 -14.36 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A LYS 2 ? A LYS 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A SER 72 ? A SER 72 5 1 Y 1 A TYR 73 ? A TYR 73 6 1 Y 1 A GLY 74 ? A GLY 74 7 1 Y 1 A ASN 75 ? A ASN 75 8 1 Y 1 A ALA 76 ? A ALA 76 9 1 Y 1 A PHE 77 ? A PHE 77 10 1 Y 1 A LYS 78 ? A LYS 78 11 1 Y 1 A SER 79 ? A SER 79 12 1 Y 1 A SER 80 ? A SER 80 13 1 Y 1 A GLY 81 ? A GLY 81 14 1 Y 1 A GLU 82 ? A GLU 82 15 1 Y 1 A VAL 83 ? A VAL 83 16 1 Y 1 A GLU 180 ? A GLU 180 17 1 Y 1 A GLU 181 ? A GLU 181 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DIO C1 C N N 88 DIO C2 C N N 89 DIO "C1'" C N N 90 DIO "C2'" C N N 91 DIO O1 O N N 92 DIO "O1'" O N N 93 DIO H11 H N N 94 DIO H12 H N N 95 DIO H21 H N N 96 DIO H22 H N N 97 DIO "H1'1" H N N 98 DIO "H1'2" H N N 99 DIO "H2'1" H N N 100 DIO "H2'2" H N N 101 GLN N N N N 102 GLN CA C N S 103 GLN C C N N 104 GLN O O N N 105 GLN CB C N N 106 GLN CG C N N 107 GLN CD C N N 108 GLN OE1 O N N 109 GLN NE2 N N N 110 GLN OXT O N N 111 GLN H H N N 112 GLN H2 H N N 113 GLN HA H N N 114 GLN HB2 H N N 115 GLN HB3 H N N 116 GLN HG2 H N N 117 GLN HG3 H N N 118 GLN HE21 H N N 119 GLN HE22 H N N 120 GLN HXT H N N 121 GLU N N N N 122 GLU CA C N S 123 GLU C C N N 124 GLU O O N N 125 GLU CB C N N 126 GLU CG C N N 127 GLU CD C N N 128 GLU OE1 O N N 129 GLU OE2 O N N 130 GLU OXT O N N 131 GLU H H N N 132 GLU H2 H N N 133 GLU HA H N N 134 GLU HB2 H N N 135 GLU HB3 H N N 136 GLU HG2 H N N 137 GLU HG3 H N N 138 GLU HE2 H N N 139 GLU HXT H N N 140 GLY N N N N 141 GLY CA C N N 142 GLY C C N N 143 GLY O O N N 144 GLY OXT O N N 145 GLY H H N N 146 GLY H2 H N N 147 GLY HA2 H N N 148 GLY HA3 H N N 149 GLY HXT H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 IMP P P N N 197 IMP O1P O N N 198 IMP O2P O N N 199 IMP O3P O N N 200 IMP "O5'" O N N 201 IMP "C5'" C N N 202 IMP "C4'" C N R 203 IMP "O4'" O N N 204 IMP "C3'" C N S 205 IMP "O3'" O N N 206 IMP "C2'" C N R 207 IMP "O2'" O N N 208 IMP "C1'" C N R 209 IMP N9 N Y N 210 IMP C8 C Y N 211 IMP N7 N Y N 212 IMP C5 C Y N 213 IMP C6 C N N 214 IMP O6 O N N 215 IMP N1 N N N 216 IMP C2 C N N 217 IMP N3 N N N 218 IMP C4 C Y N 219 IMP HOP2 H N N 220 IMP HOP3 H N N 221 IMP "H5'1" H N N 222 IMP "H5'2" H N N 223 IMP "H4'" H N N 224 IMP "H3'" H N N 225 IMP "HO3'" H N N 226 IMP "H2'" H N N 227 IMP "HO2'" H N N 228 IMP "H1'" H N N 229 IMP H8 H N N 230 IMP HN1 H N N 231 IMP H2 H N N 232 LEU N N N N 233 LEU CA C N S 234 LEU C C N N 235 LEU O O N N 236 LEU CB C N N 237 LEU CG C N N 238 LEU CD1 C N N 239 LEU CD2 C N N 240 LEU OXT O N N 241 LEU H H N N 242 LEU H2 H N N 243 LEU HA H N N 244 LEU HB2 H N N 245 LEU HB3 H N N 246 LEU HG H N N 247 LEU HD11 H N N 248 LEU HD12 H N N 249 LEU HD13 H N N 250 LEU HD21 H N N 251 LEU HD22 H N N 252 LEU HD23 H N N 253 LEU HXT H N N 254 LYS N N N N 255 LYS CA C N S 256 LYS C C N N 257 LYS O O N N 258 LYS CB C N N 259 LYS CG C N N 260 LYS CD C N N 261 LYS CE C N N 262 LYS NZ N N N 263 LYS OXT O N N 264 LYS H H N N 265 LYS H2 H N N 266 LYS HA H N N 267 LYS HB2 H N N 268 LYS HB3 H N N 269 LYS HG2 H N N 270 LYS HG3 H N N 271 LYS HD2 H N N 272 LYS HD3 H N N 273 LYS HE2 H N N 274 LYS HE3 H N N 275 LYS HZ1 H N N 276 LYS HZ2 H N N 277 LYS HZ3 H N N 278 LYS HXT H N N 279 MET N N N N 280 MET CA C N S 281 MET C C N N 282 MET O O N N 283 MET CB C N N 284 MET CG C N N 285 MET SD S N N 286 MET CE C N N 287 MET OXT O N N 288 MET H H N N 289 MET H2 H N N 290 MET HA H N N 291 MET HB2 H N N 292 MET HB3 H N N 293 MET HG2 H N N 294 MET HG3 H N N 295 MET HE1 H N N 296 MET HE2 H N N 297 MET HE3 H N N 298 MET HXT H N N 299 PHE N N N N 300 PHE CA C N S 301 PHE C C N N 302 PHE O O N N 303 PHE CB C N N 304 PHE CG C Y N 305 PHE CD1 C Y N 306 PHE CD2 C Y N 307 PHE CE1 C Y N 308 PHE CE2 C Y N 309 PHE CZ C Y N 310 PHE OXT O N N 311 PHE H H N N 312 PHE H2 H N N 313 PHE HA H N N 314 PHE HB2 H N N 315 PHE HB3 H N N 316 PHE HD1 H N N 317 PHE HD2 H N N 318 PHE HE1 H N N 319 PHE HE2 H N N 320 PHE HZ H N N 321 PHE HXT H N N 322 PRO N N N N 323 PRO CA C N S 324 PRO C C N N 325 PRO O O N N 326 PRO CB C N N 327 PRO CG C N N 328 PRO CD C N N 329 PRO OXT O N N 330 PRO H H N N 331 PRO HA H N N 332 PRO HB2 H N N 333 PRO HB3 H N N 334 PRO HG2 H N N 335 PRO HG3 H N N 336 PRO HD2 H N N 337 PRO HD3 H N N 338 PRO HXT H N N 339 SER N N N N 340 SER CA C N S 341 SER C C N N 342 SER O O N N 343 SER CB C N N 344 SER OG O N N 345 SER OXT O N N 346 SER H H N N 347 SER H2 H N N 348 SER HA H N N 349 SER HB2 H N N 350 SER HB3 H N N 351 SER HG H N N 352 SER HXT H N N 353 THR N N N N 354 THR CA C N S 355 THR C C N N 356 THR O O N N 357 THR CB C N R 358 THR OG1 O N N 359 THR CG2 C N N 360 THR OXT O N N 361 THR H H N N 362 THR H2 H N N 363 THR HA H N N 364 THR HB H N N 365 THR HG1 H N N 366 THR HG21 H N N 367 THR HG22 H N N 368 THR HG23 H N N 369 THR HXT H N N 370 TYR N N N N 371 TYR CA C N S 372 TYR C C N N 373 TYR O O N N 374 TYR CB C N N 375 TYR CG C Y N 376 TYR CD1 C Y N 377 TYR CD2 C Y N 378 TYR CE1 C Y N 379 TYR CE2 C Y N 380 TYR CZ C Y N 381 TYR OH O N N 382 TYR OXT O N N 383 TYR H H N N 384 TYR H2 H N N 385 TYR HA H N N 386 TYR HB2 H N N 387 TYR HB3 H N N 388 TYR HD1 H N N 389 TYR HD2 H N N 390 TYR HE1 H N N 391 TYR HE2 H N N 392 TYR HH H N N 393 TYR HXT H N N 394 VAL N N N N 395 VAL CA C N S 396 VAL C C N N 397 VAL O O N N 398 VAL CB C N N 399 VAL CG1 C N N 400 VAL CG2 C N N 401 VAL OXT O N N 402 VAL H H N N 403 VAL H2 H N N 404 VAL HA H N N 405 VAL HB H N N 406 VAL HG11 H N N 407 VAL HG12 H N N 408 VAL HG13 H N N 409 VAL HG21 H N N 410 VAL HG22 H N N 411 VAL HG23 H N N 412 VAL HXT H N N 413 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DIO C1 "C1'" sing N N 83 DIO C1 O1 sing N N 84 DIO C1 H11 sing N N 85 DIO C1 H12 sing N N 86 DIO C2 "C2'" sing N N 87 DIO C2 O1 sing N N 88 DIO C2 H21 sing N N 89 DIO C2 H22 sing N N 90 DIO "C1'" "O1'" sing N N 91 DIO "C1'" "H1'1" sing N N 92 DIO "C1'" "H1'2" sing N N 93 DIO "C2'" "O1'" sing N N 94 DIO "C2'" "H2'1" sing N N 95 DIO "C2'" "H2'2" sing N N 96 GLN N CA sing N N 97 GLN N H sing N N 98 GLN N H2 sing N N 99 GLN CA C sing N N 100 GLN CA CB sing N N 101 GLN CA HA sing N N 102 GLN C O doub N N 103 GLN C OXT sing N N 104 GLN CB CG sing N N 105 GLN CB HB2 sing N N 106 GLN CB HB3 sing N N 107 GLN CG CD sing N N 108 GLN CG HG2 sing N N 109 GLN CG HG3 sing N N 110 GLN CD OE1 doub N N 111 GLN CD NE2 sing N N 112 GLN NE2 HE21 sing N N 113 GLN NE2 HE22 sing N N 114 GLN OXT HXT sing N N 115 GLU N CA sing N N 116 GLU N H sing N N 117 GLU N H2 sing N N 118 GLU CA C sing N N 119 GLU CA CB sing N N 120 GLU CA HA sing N N 121 GLU C O doub N N 122 GLU C OXT sing N N 123 GLU CB CG sing N N 124 GLU CB HB2 sing N N 125 GLU CB HB3 sing N N 126 GLU CG CD sing N N 127 GLU CG HG2 sing N N 128 GLU CG HG3 sing N N 129 GLU CD OE1 doub N N 130 GLU CD OE2 sing N N 131 GLU OE2 HE2 sing N N 132 GLU OXT HXT sing N N 133 GLY N CA sing N N 134 GLY N H sing N N 135 GLY N H2 sing N N 136 GLY CA C sing N N 137 GLY CA HA2 sing N N 138 GLY CA HA3 sing N N 139 GLY C O doub N N 140 GLY C OXT sing N N 141 GLY OXT HXT sing N N 142 HIS N CA sing N N 143 HIS N H sing N N 144 HIS N H2 sing N N 145 HIS CA C sing N N 146 HIS CA CB sing N N 147 HIS CA HA sing N N 148 HIS C O doub N N 149 HIS C OXT sing N N 150 HIS CB CG sing N N 151 HIS CB HB2 sing N N 152 HIS CB HB3 sing N N 153 HIS CG ND1 sing Y N 154 HIS CG CD2 doub Y N 155 HIS ND1 CE1 doub Y N 156 HIS ND1 HD1 sing N N 157 HIS CD2 NE2 sing Y N 158 HIS CD2 HD2 sing N N 159 HIS CE1 NE2 sing Y N 160 HIS CE1 HE1 sing N N 161 HIS NE2 HE2 sing N N 162 HIS OXT HXT sing N N 163 HOH O H1 sing N N 164 HOH O H2 sing N N 165 ILE N CA sing N N 166 ILE N H sing N N 167 ILE N H2 sing N N 168 ILE CA C sing N N 169 ILE CA CB sing N N 170 ILE CA HA sing N N 171 ILE C O doub N N 172 ILE C OXT sing N N 173 ILE CB CG1 sing N N 174 ILE CB CG2 sing N N 175 ILE CB HB sing N N 176 ILE CG1 CD1 sing N N 177 ILE CG1 HG12 sing N N 178 ILE CG1 HG13 sing N N 179 ILE CG2 HG21 sing N N 180 ILE CG2 HG22 sing N N 181 ILE CG2 HG23 sing N N 182 ILE CD1 HD11 sing N N 183 ILE CD1 HD12 sing N N 184 ILE CD1 HD13 sing N N 185 ILE OXT HXT sing N N 186 IMP P O1P doub N N 187 IMP P O2P sing N N 188 IMP P O3P sing N N 189 IMP P "O5'" sing N N 190 IMP O2P HOP2 sing N N 191 IMP O3P HOP3 sing N N 192 IMP "O5'" "C5'" sing N N 193 IMP "C5'" "C4'" sing N N 194 IMP "C5'" "H5'1" sing N N 195 IMP "C5'" "H5'2" sing N N 196 IMP "C4'" "O4'" sing N N 197 IMP "C4'" "C3'" sing N N 198 IMP "C4'" "H4'" sing N N 199 IMP "O4'" "C1'" sing N N 200 IMP "C3'" "O3'" sing N N 201 IMP "C3'" "C2'" sing N N 202 IMP "C3'" "H3'" sing N N 203 IMP "O3'" "HO3'" sing N N 204 IMP "C2'" "O2'" sing N N 205 IMP "C2'" "C1'" sing N N 206 IMP "C2'" "H2'" sing N N 207 IMP "O2'" "HO2'" sing N N 208 IMP "C1'" N9 sing N N 209 IMP "C1'" "H1'" sing N N 210 IMP N9 C8 sing Y N 211 IMP N9 C4 sing Y N 212 IMP C8 N7 doub Y N 213 IMP C8 H8 sing N N 214 IMP N7 C5 sing Y N 215 IMP C5 C6 sing N N 216 IMP C5 C4 doub Y N 217 IMP C6 O6 doub N N 218 IMP C6 N1 sing N N 219 IMP N1 C2 sing N N 220 IMP N1 HN1 sing N N 221 IMP C2 N3 doub N N 222 IMP C2 H2 sing N N 223 IMP N3 C4 sing N N 224 LEU N CA sing N N 225 LEU N H sing N N 226 LEU N H2 sing N N 227 LEU CA C sing N N 228 LEU CA CB sing N N 229 LEU CA HA sing N N 230 LEU C O doub N N 231 LEU C OXT sing N N 232 LEU CB CG sing N N 233 LEU CB HB2 sing N N 234 LEU CB HB3 sing N N 235 LEU CG CD1 sing N N 236 LEU CG CD2 sing N N 237 LEU CG HG sing N N 238 LEU CD1 HD11 sing N N 239 LEU CD1 HD12 sing N N 240 LEU CD1 HD13 sing N N 241 LEU CD2 HD21 sing N N 242 LEU CD2 HD22 sing N N 243 LEU CD2 HD23 sing N N 244 LEU OXT HXT sing N N 245 LYS N CA sing N N 246 LYS N H sing N N 247 LYS N H2 sing N N 248 LYS CA C sing N N 249 LYS CA CB sing N N 250 LYS CA HA sing N N 251 LYS C O doub N N 252 LYS C OXT sing N N 253 LYS CB CG sing N N 254 LYS CB HB2 sing N N 255 LYS CB HB3 sing N N 256 LYS CG CD sing N N 257 LYS CG HG2 sing N N 258 LYS CG HG3 sing N N 259 LYS CD CE sing N N 260 LYS CD HD2 sing N N 261 LYS CD HD3 sing N N 262 LYS CE NZ sing N N 263 LYS CE HE2 sing N N 264 LYS CE HE3 sing N N 265 LYS NZ HZ1 sing N N 266 LYS NZ HZ2 sing N N 267 LYS NZ HZ3 sing N N 268 LYS OXT HXT sing N N 269 MET N CA sing N N 270 MET N H sing N N 271 MET N H2 sing N N 272 MET CA C sing N N 273 MET CA CB sing N N 274 MET CA HA sing N N 275 MET C O doub N N 276 MET C OXT sing N N 277 MET CB CG sing N N 278 MET CB HB2 sing N N 279 MET CB HB3 sing N N 280 MET CG SD sing N N 281 MET CG HG2 sing N N 282 MET CG HG3 sing N N 283 MET SD CE sing N N 284 MET CE HE1 sing N N 285 MET CE HE2 sing N N 286 MET CE HE3 sing N N 287 MET OXT HXT sing N N 288 PHE N CA sing N N 289 PHE N H sing N N 290 PHE N H2 sing N N 291 PHE CA C sing N N 292 PHE CA CB sing N N 293 PHE CA HA sing N N 294 PHE C O doub N N 295 PHE C OXT sing N N 296 PHE CB CG sing N N 297 PHE CB HB2 sing N N 298 PHE CB HB3 sing N N 299 PHE CG CD1 doub Y N 300 PHE CG CD2 sing Y N 301 PHE CD1 CE1 sing Y N 302 PHE CD1 HD1 sing N N 303 PHE CD2 CE2 doub Y N 304 PHE CD2 HD2 sing N N 305 PHE CE1 CZ doub Y N 306 PHE CE1 HE1 sing N N 307 PHE CE2 CZ sing Y N 308 PHE CE2 HE2 sing N N 309 PHE CZ HZ sing N N 310 PHE OXT HXT sing N N 311 PRO N CA sing N N 312 PRO N CD sing N N 313 PRO N H sing N N 314 PRO CA C sing N N 315 PRO CA CB sing N N 316 PRO CA HA sing N N 317 PRO C O doub N N 318 PRO C OXT sing N N 319 PRO CB CG sing N N 320 PRO CB HB2 sing N N 321 PRO CB HB3 sing N N 322 PRO CG CD sing N N 323 PRO CG HG2 sing N N 324 PRO CG HG3 sing N N 325 PRO CD HD2 sing N N 326 PRO CD HD3 sing N N 327 PRO OXT HXT sing N N 328 SER N CA sing N N 329 SER N H sing N N 330 SER N H2 sing N N 331 SER CA C sing N N 332 SER CA CB sing N N 333 SER CA HA sing N N 334 SER C O doub N N 335 SER C OXT sing N N 336 SER CB OG sing N N 337 SER CB HB2 sing N N 338 SER CB HB3 sing N N 339 SER OG HG sing N N 340 SER OXT HXT sing N N 341 THR N CA sing N N 342 THR N H sing N N 343 THR N H2 sing N N 344 THR CA C sing N N 345 THR CA CB sing N N 346 THR CA HA sing N N 347 THR C O doub N N 348 THR C OXT sing N N 349 THR CB OG1 sing N N 350 THR CB CG2 sing N N 351 THR CB HB sing N N 352 THR OG1 HG1 sing N N 353 THR CG2 HG21 sing N N 354 THR CG2 HG22 sing N N 355 THR CG2 HG23 sing N N 356 THR OXT HXT sing N N 357 TYR N CA sing N N 358 TYR N H sing N N 359 TYR N H2 sing N N 360 TYR CA C sing N N 361 TYR CA CB sing N N 362 TYR CA HA sing N N 363 TYR C O doub N N 364 TYR C OXT sing N N 365 TYR CB CG sing N N 366 TYR CB HB2 sing N N 367 TYR CB HB3 sing N N 368 TYR CG CD1 doub Y N 369 TYR CG CD2 sing Y N 370 TYR CD1 CE1 sing Y N 371 TYR CD1 HD1 sing N N 372 TYR CD2 CE2 doub Y N 373 TYR CD2 HD2 sing N N 374 TYR CE1 CZ doub Y N 375 TYR CE1 HE1 sing N N 376 TYR CE2 CZ sing Y N 377 TYR CE2 HE2 sing N N 378 TYR CZ OH sing N N 379 TYR OH HH sing N N 380 TYR OXT HXT sing N N 381 VAL N CA sing N N 382 VAL N H sing N N 383 VAL N H2 sing N N 384 VAL CA C sing N N 385 VAL CA CB sing N N 386 VAL CA HA sing N N 387 VAL C O doub N N 388 VAL C OXT sing N N 389 VAL CB CG1 sing N N 390 VAL CB CG2 sing N N 391 VAL CB HB sing N N 392 VAL CG1 HG11 sing N N 393 VAL CG1 HG12 sing N N 394 VAL CG1 HG13 sing N N 395 VAL CG2 HG21 sing N N 396 VAL CG2 HG22 sing N N 397 VAL CG2 HG23 sing N N 398 VAL OXT HXT sing N N 399 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'INOSINIC ACID' IMP 3 '1,4-DIETHYLENE DIOXIDE' DIO 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ACB _pdbx_initial_refinement_model.details ? #