HEADER TRANSFERASE 31-JAN-10 3AE0 TITLE CRYSTAL STRUCTURE OF THE C(30) CAROTENOID DEHYDROSQUALENE SYNTHASE TITLE 2 FROM STAPHYLOCOCCUS AUREUS COMPLEXED WITH GERANYLGERANYL TITLE 3 THIOPYROPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDROSQUALENE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIAPOPHYTOENE SYNTHASE, 4,4'-DIAPOPHYTOENE SYNTHASE, DAP COMPND 5 SYNTHASE; COMPND 6 EC: 2.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: ATCC 27659; SOURCE 5 GENE: CRTM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-32 XA/LIC KEYWDS CRTM, CAROTENOID BIOSYNTHESIS, STAPHYLOXANTHIN BIOSYNTHESIS, KEYWDS 2 TRANSFERASE, HEAD-TO-HEAD CONDENSATION, GERANYLGERANYL KEYWDS 3 THIOPYROPHOSPHATE, GGSPP EXPDTA X-RAY DIFFRACTION AUTHOR C.I.LIU,W.Y.JENG,A.H.J.WANG,E.OLDFIELD REVDAT 4 01-NOV-23 3AE0 1 REMARK REVDAT 3 10-NOV-21 3AE0 1 REMARK SEQADV LINK REVDAT 2 04-SEP-13 3AE0 1 JRNL VERSN REVDAT 1 24-NOV-10 3AE0 0 JRNL AUTH F.Y.LIN,C.I.LIU,Y.L.LIU,Y.ZHANG,K.WANG,W.Y.JENG,T.P.KO, JRNL AUTH 2 R.CAO,A.H.WANG,E.OLDFIELD JRNL TITL MECHANISM OF ACTION AND INHIBITION OF DEHYDROSQUALENE JRNL TITL 2 SYNTHASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 21337 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21098670 JRNL DOI 10.1073/PNAS.1010907107 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.I.LIU,G.Y.LIU,Y.SONG,F.YIN,M.E.HENSLER,W.Y.JENG,V.NIZET, REMARK 1 AUTH 2 A.H.WANG,E.OLDFIELD REMARK 1 TITL A CHOLESTEROL BIOSYNTHESIS INHIBITOR BLOCKS STAPHYLOCOCCUS REMARK 1 TITL 2 AUREUS VIRULENCE. REMARK 1 REF SCIENCE V. 319 1391 2008 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 18276850 REMARK 1 DOI 10.1126/SCIENCE.1153018 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.SONG,C.I.LIU,F.Y.LIN,J.H.NO,M.HENSLER,Y.L.LIU,W.Y.JENG, REMARK 1 AUTH 2 J.LOW,G.Y.LIU,V.NIZET,A.H.J.WANG,E.OLDFIELD REMARK 1 TITL INHIBITION OF STAPHYLOXANTHIN VIRULENCE FACTOR BIOSYNTHESIS REMARK 1 TITL 2 IN STAPHYLOCOCCUS AUREUS: IN VITRO, IN VIVO, AND REMARK 1 TITL 3 CRYSTALLOGRAPHIC RESULTS. REMARK 1 REF J.MED.CHEM. V. 52 3869 2009 REMARK 1 REFN ISSN 0022-2623 REMARK 1 PMID 19456099 REMARK 1 DOI 10.1021/JM9001764 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 26857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1428 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3768 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4772 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.64000 REMARK 3 B22 (A**2) : 1.64000 REMARK 3 B33 (A**2) : -2.46000 REMARK 3 B12 (A**2) : 0.82000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.292 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.225 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.795 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4994 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6732 ; 1.522 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 566 ; 5.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;36.015 ;24.307 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 884 ;19.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;14.831 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 694 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3878 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2830 ; 1.262 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4580 ; 2.180 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2164 ; 3.108 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2152 ; 4.715 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4994 ; 2.122 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 76 ; 9.735 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4888 ; 3.154 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3867 12.5945 23.8557 REMARK 3 T TENSOR REMARK 3 T11: 0.1693 T22: 0.0312 REMARK 3 T33: 0.0939 T12: 0.0332 REMARK 3 T13: -0.0308 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 3.0016 L22: 2.4017 REMARK 3 L33: 3.6316 L12: 0.6377 REMARK 3 L13: -1.2134 L23: -0.5112 REMARK 3 S TENSOR REMARK 3 S11: -0.2012 S12: -0.0088 S13: -0.1628 REMARK 3 S21: -0.0876 S22: 0.0070 S23: 0.0481 REMARK 3 S31: 0.3146 S32: -0.2015 S33: 0.1942 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 284 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0307 -12.7804 6.6949 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.0132 REMARK 3 T33: 0.0869 T12: -0.0245 REMARK 3 T13: 0.0190 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 2.3933 L22: 2.8528 REMARK 3 L33: 5.0283 L12: -0.6978 REMARK 3 L13: 1.0622 L23: -1.5053 REMARK 3 S TENSOR REMARK 3 S11: -0.2115 S12: -0.0383 S13: 0.1334 REMARK 3 S21: 0.3389 S22: -0.0167 S23: 0.0660 REMARK 3 S31: -0.6337 S32: -0.0540 S33: 0.2281 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AE0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000029134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28335 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2ZCP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-21% PEG 4000, 0.3-0.4M MGCL2, 0.1M REMARK 280 TRIS, 0.5MM GGSPP, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.20567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.41133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 122.41133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.20567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -5 REMARK 465 ALA A -4 REMARK 465 ALA A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 HIS A 285 REMARK 465 ARG A 286 REMARK 465 ILE A 287 REMARK 465 ALA B -5 REMARK 465 ALA B -4 REMARK 465 ALA B -3 REMARK 465 ALA B -2 REMARK 465 ALA B -1 REMARK 465 ALA B 0 REMARK 465 HIS B 285 REMARK 465 ARG B 286 REMARK 465 ILE B 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1A GGS A 1002 MG MG A 1005 1.61 REMARK 500 O1A GGS B 1004 MG MG B 1008 1.63 REMARK 500 O2B GGS A 1001 MG MG A 1006 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 82 -87.85 -92.99 REMARK 500 ASP A 114 26.95 -79.96 REMARK 500 GLN A 115 -61.23 -108.32 REMARK 500 HIS A 116 46.35 -69.93 REMARK 500 ALA A 134 -37.12 -138.01 REMARK 500 GLU A 180 34.62 71.82 REMARK 500 ASP B 56 98.97 -164.19 REMARK 500 SER B 82 -88.09 -94.17 REMARK 500 ASP B 114 23.13 -75.07 REMARK 500 GLN B 115 -67.04 -107.45 REMARK 500 HIS B 116 50.78 -67.97 REMARK 500 ALA B 134 -36.49 -135.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1007 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 48 OD2 REMARK 620 2 ASP A 52 OD2 141.7 REMARK 620 3 HOH A 535 O 99.5 68.1 REMARK 620 4 GGS A1002 O3B 70.7 122.8 59.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 168 OD1 REMARK 620 2 ASP A 172 OD1 85.4 REMARK 620 3 HOH A 501 O 79.6 161.7 REMARK 620 4 HOH A 529 O 168.2 93.6 98.9 REMARK 620 5 HOH A 565 O 75.3 103.1 63.0 93.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1006 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 560 O REMARK 620 2 GGS A1001 O2A 153.2 REMARK 620 3 GGS A1002 O2A 76.2 81.1 REMARK 620 4 GGS A1002 O1B 84.3 75.8 73.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1010 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 48 OD1 REMARK 620 2 ASP B 52 OD1 117.6 REMARK 620 3 GGS B1004 O3B 108.6 133.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1008 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 168 OD1 REMARK 620 2 ASP B 172 OD2 82.2 REMARK 620 3 HOH B 504 O 86.8 164.8 REMARK 620 4 HOH B 566 O 171.9 92.4 97.4 REMARK 620 5 HOH B 567 O 86.6 112.7 55.9 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1009 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GGS B1003 O2B REMARK 620 2 GGS B1003 O2A 72.7 REMARK 620 3 GGS B1004 O1B 155.5 86.1 REMARK 620 4 GGS B1004 O2A 71.4 90.3 97.2 REMARK 620 5 GGS B1004 O3A 123.9 112.6 53.3 53.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GGS A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GGS A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GGS B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GGS B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1010 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZCO RELATED DB: PDB REMARK 900 THE APO-ENZYME. REMARK 900 RELATED ID: 2ZCP RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH FARNESYL THIOPYROPHOSPHATE. REMARK 900 RELATED ID: 2ZCQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH BPH-652. REMARK 900 RELATED ID: 2ZCR RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH BPH-698. REMARK 900 RELATED ID: 2ZCS RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH BPH-700. REMARK 900 RELATED ID: 2ZY1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH BPH-830. REMARK 900 RELATED ID: 3ADZ RELATED DB: PDB DBREF 3AE0 A 1 287 UNP A9JQL9 CRTM_STAAU 1 287 DBREF 3AE0 B 1 287 UNP A9JQL9 CRTM_STAAU 1 287 SEQADV 3AE0 ALA A -5 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA A -4 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA A -3 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA A -2 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA A -1 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA A 0 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA A 26 UNP A9JQL9 PHE 26 ENGINEERED MUTATION SEQADV 3AE0 ALA B -5 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA B -4 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA B -3 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA B -2 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA B -1 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA B 0 UNP A9JQL9 EXPRESSION TAG SEQADV 3AE0 ALA B 26 UNP A9JQL9 PHE 26 ENGINEERED MUTATION SEQRES 1 A 293 ALA ALA ALA ALA ALA ALA MET THR MET MET ASP MET ASN SEQRES 2 A 293 PHE LYS TYR CYS HIS LYS ILE MET LYS LYS HIS SER LYS SEQRES 3 A 293 SER PHE SER TYR ALA ALA ASP LEU LEU PRO GLU ASP GLN SEQRES 4 A 293 ARG LYS ALA VAL TRP ALA ILE TYR ALA VAL CYS ARG LYS SEQRES 5 A 293 ILE ASP ASP SER ILE ASP VAL TYR GLY ASP ILE GLN PHE SEQRES 6 A 293 LEU ASN GLN ILE LYS GLU ASP ILE GLN SER ILE GLU LYS SEQRES 7 A 293 TYR PRO TYR GLU TYR HIS HIS PHE GLN SER ASP ARG ARG SEQRES 8 A 293 ILE MET MET ALA LEU GLN HIS VAL ALA GLN HIS LYS ASN SEQRES 9 A 293 ILE ALA PHE GLN SER PHE TYR ASN LEU ILE ASP THR VAL SEQRES 10 A 293 TYR LYS ASP GLN HIS PHE THR MET PHE GLU THR ASP ALA SEQRES 11 A 293 GLU LEU PHE GLY TYR CYS TYR GLY VAL ALA GLY THR VAL SEQRES 12 A 293 GLY GLU VAL LEU THR PRO ILE LEU SER ASP HIS GLU THR SEQRES 13 A 293 HIS GLN THR TYR ASP VAL ALA ARG ARG LEU GLY GLU SER SEQRES 14 A 293 LEU GLN LEU ILE ASN ILE LEU ARG ASP VAL GLY GLU ASP SEQRES 15 A 293 PHE GLU ASN GLU ARG ILE TYR PHE SER LYS GLN ARG LEU SEQRES 16 A 293 LYS GLN TYR GLU VAL ASP ILE ALA GLU VAL TYR GLN ASN SEQRES 17 A 293 GLY VAL ASN ASN HIS TYR ILE ASP LEU TRP GLU TYR TYR SEQRES 18 A 293 ALA ALA ILE ALA GLU LYS ASP PHE ARG ASP VAL MET ASP SEQRES 19 A 293 GLN ILE LYS VAL PHE SER ILE GLU ALA GLN PRO ILE ILE SEQRES 20 A 293 GLU LEU ALA ALA ARG ILE TYR ILE GLU ILE LEU ASP GLU SEQRES 21 A 293 VAL ARG GLN ALA ASN TYR THR LEU HIS GLU ARG VAL PHE SEQRES 22 A 293 VAL GLU LYS ARG LYS LYS ALA LYS LEU PHE HIS GLU ILE SEQRES 23 A 293 ASN SER LYS TYR HIS ARG ILE SEQRES 1 B 293 ALA ALA ALA ALA ALA ALA MET THR MET MET ASP MET ASN SEQRES 2 B 293 PHE LYS TYR CYS HIS LYS ILE MET LYS LYS HIS SER LYS SEQRES 3 B 293 SER PHE SER TYR ALA ALA ASP LEU LEU PRO GLU ASP GLN SEQRES 4 B 293 ARG LYS ALA VAL TRP ALA ILE TYR ALA VAL CYS ARG LYS SEQRES 5 B 293 ILE ASP ASP SER ILE ASP VAL TYR GLY ASP ILE GLN PHE SEQRES 6 B 293 LEU ASN GLN ILE LYS GLU ASP ILE GLN SER ILE GLU LYS SEQRES 7 B 293 TYR PRO TYR GLU TYR HIS HIS PHE GLN SER ASP ARG ARG SEQRES 8 B 293 ILE MET MET ALA LEU GLN HIS VAL ALA GLN HIS LYS ASN SEQRES 9 B 293 ILE ALA PHE GLN SER PHE TYR ASN LEU ILE ASP THR VAL SEQRES 10 B 293 TYR LYS ASP GLN HIS PHE THR MET PHE GLU THR ASP ALA SEQRES 11 B 293 GLU LEU PHE GLY TYR CYS TYR GLY VAL ALA GLY THR VAL SEQRES 12 B 293 GLY GLU VAL LEU THR PRO ILE LEU SER ASP HIS GLU THR SEQRES 13 B 293 HIS GLN THR TYR ASP VAL ALA ARG ARG LEU GLY GLU SER SEQRES 14 B 293 LEU GLN LEU ILE ASN ILE LEU ARG ASP VAL GLY GLU ASP SEQRES 15 B 293 PHE GLU ASN GLU ARG ILE TYR PHE SER LYS GLN ARG LEU SEQRES 16 B 293 LYS GLN TYR GLU VAL ASP ILE ALA GLU VAL TYR GLN ASN SEQRES 17 B 293 GLY VAL ASN ASN HIS TYR ILE ASP LEU TRP GLU TYR TYR SEQRES 18 B 293 ALA ALA ILE ALA GLU LYS ASP PHE ARG ASP VAL MET ASP SEQRES 19 B 293 GLN ILE LYS VAL PHE SER ILE GLU ALA GLN PRO ILE ILE SEQRES 20 B 293 GLU LEU ALA ALA ARG ILE TYR ILE GLU ILE LEU ASP GLU SEQRES 21 B 293 VAL ARG GLN ALA ASN TYR THR LEU HIS GLU ARG VAL PHE SEQRES 22 B 293 VAL GLU LYS ARG LYS LYS ALA LYS LEU PHE HIS GLU ILE SEQRES 23 B 293 ASN SER LYS TYR HIS ARG ILE HET GGS A1001 29 HET GGS A1002 29 HET MG A1005 1 HET MG A1006 1 HET MG A1007 1 HET GGS B1003 29 HET GGS B1004 29 HET MG B1008 1 HET MG B1009 1 HET MG B1010 1 HETNAM GGS PHOSPHONOOXY-[(10E)-3,7,11,15-TETRAMETHYLHEXADECA-2,6, HETNAM 2 GGS 10,14-TETRAENYL]SULFANYL-PHOSPHINIC ACID HETNAM MG MAGNESIUM ION FORMUL 3 GGS 4(C20 H36 O6 P2 S) FORMUL 5 MG 6(MG 2+) FORMUL 13 HOH *70(H2 O) HELIX 1 1 THR A 2 SER A 19 1 18 HELIX 2 2 PHE A 22 ASP A 27 1 6 HELIX 3 3 PRO A 30 VAL A 53 1 24 HELIX 4 4 ASP A 56 TYR A 73 1 18 HELIX 5 5 ASP A 83 GLN A 95 1 13 HELIX 6 6 ALA A 100 ASP A 114 1 15 HELIX 7 7 THR A 122 ALA A 134 1 13 HELIX 8 8 ALA A 134 SER A 146 1 13 HELIX 9 9 THR A 150 ASN A 179 1 30 HELIX 10 10 SER A 185 TYR A 192 1 8 HELIX 11 11 ASP A 195 GLY A 203 1 9 HELIX 12 12 ASN A 205 GLN A 229 1 25 HELIX 13 13 ILE A 230 PHE A 233 5 4 HELIX 14 14 GLU A 236 ALA A 258 1 23 HELIX 15 15 GLU A 269 TYR A 284 1 16 HELIX 16 16 THR B 2 SER B 19 1 18 HELIX 17 17 PHE B 22 ASP B 27 1 6 HELIX 18 18 PRO B 30 SER B 50 1 21 HELIX 19 19 ASP B 56 TYR B 73 1 18 HELIX 20 20 ASP B 83 GLN B 95 1 13 HELIX 21 21 ALA B 100 ASP B 114 1 15 HELIX 22 22 THR B 122 ALA B 134 1 13 HELIX 23 23 ALA B 134 SER B 146 1 13 HELIX 24 24 THR B 150 ASP B 172 1 23 HELIX 25 25 ASP B 172 ASN B 179 1 8 HELIX 26 26 SER B 185 GLU B 193 1 9 HELIX 27 27 ASP B 195 GLY B 203 1 9 HELIX 28 28 ASN B 205 GLN B 229 1 25 HELIX 29 29 ILE B 230 PHE B 233 5 4 HELIX 30 30 ALA B 237 ALA B 258 1 22 HELIX 31 31 GLU B 269 SER B 282 1 14 LINK OD2 ASP A 48 MG MG A1007 1555 1555 2.17 LINK OD2 ASP A 52 MG MG A1007 1555 1555 2.71 LINK OD1 ASN A 168 MG MG A1005 1555 1555 2.34 LINK OD1 ASP A 172 MG MG A1005 1555 1555 2.16 LINK O HOH A 501 MG MG A1005 1555 1555 2.31 LINK O HOH A 529 MG MG A1005 1555 1555 1.78 LINK O HOH A 535 MG MG A1007 1555 1555 1.92 LINK O HOH A 560 MG MG A1006 1555 1555 2.28 LINK O HOH A 565 MG MG A1005 1555 1555 2.26 LINK O2A GGS A1001 MG MG A1006 1555 1555 1.97 LINK O2A GGS A1002 MG MG A1006 1555 1555 2.30 LINK O1B GGS A1002 MG MG A1006 1555 1555 2.33 LINK O3B GGS A1002 MG MG A1007 1555 1555 2.74 LINK OD1 ASP B 48 MG MG B1010 1555 1555 2.15 LINK OD1 ASP B 52 MG MG B1010 1555 1555 2.45 LINK OD1 ASN B 168 MG MG B1008 1555 1555 2.20 LINK OD2 ASP B 172 MG MG B1008 1555 1555 2.14 LINK O HOH B 504 MG MG B1008 1555 1555 2.33 LINK O HOH B 566 MG MG B1008 1555 1555 2.02 LINK O HOH B 567 MG MG B1008 1555 1555 2.44 LINK O2B GGS B1003 MG MG B1009 1555 1555 1.95 LINK O2A GGS B1003 MG MG B1009 1555 1555 2.15 LINK O1B GGS B1004 MG MG B1009 1555 1555 2.32 LINK O2A GGS B1004 MG MG B1009 1555 1555 2.38 LINK O3A GGS B1004 MG MG B1009 1555 1555 2.99 LINK O3B GGS B1004 MG MG B1010 1555 1555 1.99 SITE 1 AC1 20 HIS A 18 SER A 19 LYS A 20 SER A 21 SITE 2 AC1 20 PHE A 22 TYR A 41 ARG A 45 LEU A 141 SITE 3 AC1 20 LEU A 145 LEU A 160 GLY A 161 LEU A 164 SITE 4 AC1 20 GLN A 165 ASN A 168 ARG A 171 ILE A 241 SITE 5 AC1 20 TYR A 248 ARG A 265 GGS A1002 MG A1006 SITE 1 AC2 16 MET A 15 TYR A 41 ARG A 45 ASP A 48 SITE 2 AC2 16 GLN A 165 ASN A 168 ARG A 171 ASP A 172 SITE 3 AC2 16 HOH A 501 HOH A 529 HOH A 535 HOH A 560 SITE 4 AC2 16 GGS A1001 MG A1005 MG A1006 MG A1007 SITE 1 AC3 6 ASN A 168 ASP A 172 HOH A 501 HOH A 529 SITE 2 AC3 6 HOH A 565 GGS A1002 SITE 1 AC4 4 ARG A 265 HOH A 560 GGS A1001 GGS A1002 SITE 1 AC5 5 ASP A 48 ASP A 49 ASP A 52 HOH A 535 SITE 2 AC5 5 GGS A1002 SITE 1 AC6 19 HIS B 18 SER B 19 LYS B 20 SER B 21 SITE 2 AC6 19 PHE B 22 TYR B 41 ARG B 45 ALA B 157 SITE 3 AC6 19 LEU B 160 GLY B 161 LEU B 164 GLN B 165 SITE 4 AC6 19 ASN B 168 ARG B 171 ILE B 241 TYR B 248 SITE 5 AC6 19 ARG B 265 GGS B1004 MG B1009 SITE 1 AC7 17 MET B 15 TYR B 41 ARG B 45 ASP B 48 SITE 2 AC7 17 LEU B 141 GLN B 165 ASN B 168 ARG B 171 SITE 3 AC7 17 ASP B 172 ARG B 265 HOH B 504 HOH B 508 SITE 4 AC7 17 HOH B 566 GGS B1003 MG B1008 MG B1009 SITE 5 AC7 17 MG B1010 SITE 1 AC8 6 ASN B 168 ASP B 172 HOH B 504 HOH B 566 SITE 2 AC8 6 HOH B 567 GGS B1004 SITE 1 AC9 3 ARG B 265 GGS B1003 GGS B1004 SITE 1 BC1 3 ASP B 48 ASP B 52 GGS B1004 CRYST1 80.118 80.118 183.617 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012482 0.007206 0.000000 0.00000 SCALE2 0.000000 0.014412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005446 0.00000