HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 04-FEB-10 3AE1 TITLE CRYSTAL STRUCTURE OF PORCINE HEART MITOCHONDRIAL COMPLEX II BOUND WITH TITLE 2 N-PHENYL-2-(TRIFLUOROMETHYL)-BENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: FLAVOPROTEIN SUBUNIT OF COMPLEX II, FP; COMPND 6 EC: 1.3.5.1; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, COMPND 9 MITOCHONDRIAL; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: IRON-SULFUR SUBUNIT OF COMPLEX II, IP; COMPND 12 EC: 1.3.5.1; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, COMPND 15 MITOCHONDRIAL; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B LARGE COMPND 18 SUBUNIT, CYBL; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL COMPND 21 SUBUNIT, MITOCHONDRIAL; COMPND 22 CHAIN: D; COMPND 23 FRAGMENT: RESIDUES 57-159; COMPND 24 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B SMALL COMPND 25 SUBUNIT, CYBS, SUCCINATE-UBIQUINONE REDUCTASE MEMBRANE ANCHOR COMPND 26 SUBUNIT, QPS3, CII-4, SUCCINATE DEHYDROGENASE COMPLEX SUBUNIT D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: HEART; SOURCE 6 TISSUE: MUSCLE; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 9 ORGANISM_COMMON: PIG; SOURCE 10 ORGANISM_TAXID: 9823; SOURCE 11 ORGAN: HEART; SOURCE 12 TISSUE: MUSCLE; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 15 ORGANISM_COMMON: PIG; SOURCE 16 ORGANISM_TAXID: 9823; SOURCE 17 ORGAN: HEART; SOURCE 18 TISSUE: MUSCLE; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 21 ORGANISM_COMMON: PIG; SOURCE 22 ORGANISM_TAXID: 9823; SOURCE 23 ORGAN: HEART; SOURCE 24 TISSUE: MUSCLE KEYWDS RESPIRATORY COMPLEX II, INHIBITORS, ELECTRON TRANSPORT, IRON, IRON- KEYWDS 2 SULFUR, METAL-BINDING, MITOCHONDRION, MITOCHONDRION INNER MEMBRANE, KEYWDS 3 OXIDOREDUCTASE, TRANSIT PEPTIDE, TRANSPORT, TRICARBOXYLIC ACID KEYWDS 4 CYCLE, HEME, TRANSMEMBRANE, FAD-BINDING PROTEIN, OXIDOREDUCTASE- KEYWDS 5 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HARADA,T.SASAKI,M.SHINDO,Y.KIDO,D.K.INAOKA,J.OMORI,A.OSANAI, AUTHOR 2 K.SAKAMOTO,J.MAO,S.MATSUOKA,M.INOUE,T.HONMA,A.TANAKA,K.KITA REVDAT 3 01-NOV-23 3AE1 1 REMARK LINK REVDAT 2 11-OCT-17 3AE1 1 REMARK REVDAT 1 09-FEB-11 3AE1 0 JRNL AUTH S.HARADA,T.SASAKI,M.SHINDO,Y.KIDO,D.K.INAOKA,J.OMORI, JRNL AUTH 2 A.OSANAI,K.SAKAMOTO,J.MAO,S.MATSUOKA,M.INOUE,T.HONMA, JRNL AUTH 3 A.TANAKA,K.KITA JRNL TITL CRYSTAL STRUCTURE OF PORCINE HEART MITOCHONDRIAL COMPLEX II JRNL TITL 2 BOUND WITH N-PHENYL-2-(TRIFLUOROMETHYL)-BENZAMIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 30472 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.041 REMARK 3 FREE R VALUE TEST SET COUNT : 1536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1670 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 185 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17400 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : -0.46600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.476 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8869 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12025 ; 0.964 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1088 ; 4.666 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 375 ;33.351 ;23.413 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1469 ;17.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;15.052 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1305 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6659 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4292 ; 0.176 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 6005 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 254 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.118 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5412 ; 0.130 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8677 ; 0.245 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3457 ; 0.283 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3331 ; 0.495 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2130 18.2570 -17.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.2009 T22: 0.1815 REMARK 3 T33: 0.3315 T12: 0.0681 REMARK 3 T13: -0.0342 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.2612 L22: 1.2744 REMARK 3 L33: 3.0724 L12: 0.3183 REMARK 3 L13: 0.1794 L23: -0.2379 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: 0.1324 S13: 0.0050 REMARK 3 S21: 0.0034 S22: -0.0091 S23: 0.0302 REMARK 3 S31: 0.0755 S32: 0.1378 S33: 0.0575 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 254 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): -15.7370 -1.1970 -20.7170 REMARK 3 T TENSOR REMARK 3 T11: 0.5798 T22: 0.1068 REMARK 3 T33: 0.6071 T12: 0.0928 REMARK 3 T13: -0.0077 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 2.0554 L22: 1.4147 REMARK 3 L33: 1.2517 L12: 0.5422 REMARK 3 L13: 0.7790 L23: -1.1433 REMARK 3 S TENSOR REMARK 3 S11: 0.2219 S12: 0.0829 S13: -0.5154 REMARK 3 S21: -0.2682 S22: -0.0912 S23: 0.1362 REMARK 3 S31: 0.8457 S32: 0.1760 S33: -0.1307 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 403 A 622 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8740 10.8610 -11.4930 REMARK 3 T TENSOR REMARK 3 T11: 0.1797 T22: 0.2921 REMARK 3 T33: 0.3913 T12: 0.1571 REMARK 3 T13: -0.0680 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 1.8920 L22: 0.9012 REMARK 3 L33: 2.6306 L12: 0.3521 REMARK 3 L13: 0.1580 L23: 0.2838 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: 0.0458 S13: -0.2576 REMARK 3 S21: 0.1382 S22: -0.0746 S23: -0.1901 REMARK 3 S31: 0.2917 S32: 0.6746 S33: 0.0654 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 41 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4700 13.6660 -48.9170 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 1.0141 REMARK 3 T33: 0.2393 T12: 0.1624 REMARK 3 T13: 0.0727 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.7876 L22: 6.9934 REMARK 3 L33: 4.5690 L12: -0.5566 REMARK 3 L13: 0.2216 L23: 0.9914 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.6489 S13: -0.0592 REMARK 3 S21: -0.3795 S22: 0.2609 S23: -0.9106 REMARK 3 S31: 0.5536 S32: 1.3262 S33: -0.2381 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7980 12.1960 -44.6560 REMARK 3 T TENSOR REMARK 3 T11: 0.3081 T22: 0.5560 REMARK 3 T33: 0.4043 T12: 0.2277 REMARK 3 T13: 0.0234 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.9624 L22: 4.2160 REMARK 3 L33: 2.1302 L12: 0.1726 REMARK 3 L13: 0.4487 L23: 1.4558 REMARK 3 S TENSOR REMARK 3 S11: 0.2688 S12: 0.5666 S13: -0.5483 REMARK 3 S21: -0.2106 S22: -0.2649 S23: -0.3375 REMARK 3 S31: 0.4429 S32: 0.7586 S33: -0.0039 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 109 B 168 REMARK 3 ORIGIN FOR THE GROUP (A): -27.6890 22.4010 -33.4640 REMARK 3 T TENSOR REMARK 3 T11: 0.3496 T22: 0.2313 REMARK 3 T33: 0.3878 T12: 0.0041 REMARK 3 T13: -0.0164 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 2.8902 L22: 0.2128 REMARK 3 L33: 6.2126 L12: 0.4729 REMARK 3 L13: -0.2334 L23: -1.4301 REMARK 3 S TENSOR REMARK 3 S11: 0.2644 S12: -0.3964 S13: -0.0245 REMARK 3 S21: 0.0195 S22: -0.1360 S23: 0.1611 REMARK 3 S31: -0.3986 S32: -0.2433 S33: -0.1284 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 169 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): -31.2870 25.6310 -44.9410 REMARK 3 T TENSOR REMARK 3 T11: 0.4317 T22: 0.1008 REMARK 3 T33: 0.4672 T12: 0.0453 REMARK 3 T13: -0.0826 T23: -0.0597 REMARK 3 L TENSOR REMARK 3 L11: 1.6547 L22: 1.6535 REMARK 3 L33: 6.0009 L12: 0.2141 REMARK 3 L13: 1.7510 L23: -1.1595 REMARK 3 S TENSOR REMARK 3 S11: -0.0933 S12: 0.0284 S13: -0.0028 REMARK 3 S21: -0.0428 S22: -0.0706 S23: 0.2736 REMARK 3 S31: -0.2271 S32: -0.3392 S33: 0.1639 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 107 REMARK 3 ORIGIN FOR THE GROUP (A): -25.5890 27.7390 -69.6650 REMARK 3 T TENSOR REMARK 3 T11: 0.7530 T22: 0.1884 REMARK 3 T33: 0.4538 T12: 0.0230 REMARK 3 T13: -0.0742 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 1.9074 L22: 0.4481 REMARK 3 L33: 2.9263 L12: -0.3628 REMARK 3 L13: 0.7734 L23: -0.9869 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.5245 S13: 0.0504 REMARK 3 S21: -0.5296 S22: -0.1652 S23: 0.0235 REMARK 3 S31: 0.0565 S32: 0.7094 S33: 0.1736 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 108 C 143 REMARK 3 ORIGIN FOR THE GROUP (A): -34.8820 12.9880 -65.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.6630 T22: 0.3037 REMARK 3 T33: 0.5114 T12: -0.0498 REMARK 3 T13: -0.1824 T23: -0.0477 REMARK 3 L TENSOR REMARK 3 L11: -0.8133 L22: 5.6771 REMARK 3 L33: 14.9186 L12: -0.5648 REMARK 3 L13: 1.8758 L23: 3.0297 REMARK 3 S TENSOR REMARK 3 S11: 0.4795 S12: -0.0050 S13: -0.0858 REMARK 3 S21: -0.5832 S22: 0.0012 S23: 0.2608 REMARK 3 S31: 1.2979 S32: -0.9334 S33: -0.4807 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 35 D 66 REMARK 3 ORIGIN FOR THE GROUP (A): -44.6180 28.9230 -64.9180 REMARK 3 T TENSOR REMARK 3 T11: 0.4497 T22: 0.4299 REMARK 3 T33: 0.6912 T12: -0.0573 REMARK 3 T13: -0.1745 T23: 0.0513 REMARK 3 L TENSOR REMARK 3 L11: 1.3785 L22: 4.4313 REMARK 3 L33: 16.5890 L12: -1.3633 REMARK 3 L13: 4.5860 L23: 1.5497 REMARK 3 S TENSOR REMARK 3 S11: 0.1470 S12: -0.2556 S13: 0.4249 REMARK 3 S21: 0.1432 S22: -0.0579 S23: 0.2615 REMARK 3 S31: 1.1448 S32: -1.4060 S33: -0.0890 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 67 D 96 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6670 35.6710 -66.4230 REMARK 3 T TENSOR REMARK 3 T11: 0.5683 T22: 0.0960 REMARK 3 T33: 0.3143 T12: 0.0200 REMARK 3 T13: -0.1699 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 8.2159 L22: 3.1452 REMARK 3 L33: 9.8270 L12: -0.7139 REMARK 3 L13: 4.5901 L23: -0.7918 REMARK 3 S TENSOR REMARK 3 S11: -0.1661 S12: 0.1042 S13: 0.1950 REMARK 3 S21: 0.1619 S22: -0.0551 S23: 0.1503 REMARK 3 S31: -0.2017 S32: -0.0170 S33: 0.2212 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 97 D 136 REMARK 3 ORIGIN FOR THE GROUP (A): -38.6880 37.5720 -78.8160 REMARK 3 T TENSOR REMARK 3 T11: 0.6070 T22: 0.1579 REMARK 3 T33: 0.3618 T12: 0.0010 REMARK 3 T13: -0.0969 T23: 0.1231 REMARK 3 L TENSOR REMARK 3 L11: 5.0360 L22: 5.1695 REMARK 3 L33: 5.2441 L12: -1.0007 REMARK 3 L13: 2.9642 L23: 0.0354 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.4552 S13: 0.4853 REMARK 3 S21: -0.2664 S22: -0.3690 S23: 0.2700 REMARK 3 S31: -0.0096 S32: -0.1552 S33: 0.3251 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000029135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98871 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30528 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4780 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM HEPES-NAOH, 7% PEG 4000, 200MM REMARK 280 SUCROSE, 100MM NACL, 10MM CACL2, 0.5MM EDTA, 3% 1,6-HAXANEDIOL, REMARK 280 0.5% N-DECYL-BETA-D-MALTOSIDE, PH 7.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.73250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 147.31100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.03250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 147.31100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.73250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.03250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THESE COMPLEX FORMS MITOCHONDRIAL RESPIRATORY COMPLEX II. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 ALA B 8 REMARK 465 LYS B 248 REMARK 465 LYS B 249 REMARK 465 ALA B 250 REMARK 465 SER B 251 REMARK 465 ALA B 252 REMARK 465 LEU C 4 REMARK 465 GLY C 5 REMARK 465 ALA D 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 150.43 -49.72 REMARK 500 GLN A 62 -24.39 -141.77 REMARK 500 ALA A 151 -127.08 61.46 REMARK 500 ASP A 170 40.45 -95.98 REMARK 500 THR A 256 76.25 -112.18 REMARK 500 ARG A 283 94.82 -66.91 REMARK 500 LYS A 293 -137.57 57.81 REMARK 500 CYS A 315 -61.66 -143.07 REMARK 500 HIS A 365 -66.97 -130.66 REMARK 500 CYS A 401 84.12 -153.90 REMARK 500 ASN A 408 117.44 -161.26 REMARK 500 ALA A 460 93.37 -61.02 REMARK 500 ALA A 482 -154.27 -94.91 REMARK 500 LYS A 544 62.41 -106.23 REMARK 500 GLN A 569 -80.34 -155.70 REMARK 500 ARG B 10 98.15 -162.16 REMARK 500 ILE B 55 -66.22 -106.55 REMARK 500 SER B 64 -71.07 -157.94 REMARK 500 ILE B 69 -81.62 -100.47 REMARK 500 CYS B 70 -51.48 -20.93 REMARK 500 ASN B 78 19.65 52.81 REMARK 500 ASP B 110 -125.38 44.94 REMARK 500 GLU B 126 74.36 63.44 REMARK 500 GLU B 134 37.61 -87.34 REMARK 500 LYS B 139 -28.63 -144.37 REMARK 500 HIS C 29 -79.90 -123.67 REMARK 500 CYS C 81 118.40 -32.01 REMARK 500 LYS D 37 36.99 -96.48 REMARK 500 LYS D 135 46.28 -81.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPH D 1306 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 FES B 302 S1 127.8 REMARK 620 3 FES B 302 S2 118.2 90.9 REMARK 620 4 CYS B 70 SG 109.4 98.5 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 73 SG REMARK 620 2 FES B 302 S1 115.7 REMARK 620 3 FES B 302 S2 138.0 91.1 REMARK 620 4 CYS B 85 SG 102.8 110.9 96.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 158 SG REMARK 620 2 SF4 B 303 S1 126.3 REMARK 620 3 SF4 B 303 S2 98.1 105.4 REMARK 620 4 SF4 B 303 S3 114.5 104.6 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 SF4 B 303 S1 126.1 REMARK 620 3 SF4 B 303 S2 114.4 105.6 REMARK 620 4 SF4 B 303 S4 99.4 103.2 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 164 SG REMARK 620 2 SF4 B 303 S2 120.8 REMARK 620 3 SF4 B 303 S3 113.7 105.8 REMARK 620 4 SF4 B 303 S4 104.9 105.1 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 168 SG REMARK 620 2 F3S B 304 S2 93.9 REMARK 620 3 F3S B 304 S3 93.6 98.9 REMARK 620 4 F3S B 304 S4 87.3 160.3 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 215 SG REMARK 620 2 F3S B 304 S1 100.0 REMARK 620 3 F3S B 304 S3 134.3 98.5 REMARK 620 4 F3S B 304 S4 103.2 124.7 99.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 221 SG REMARK 620 2 F3S B 304 S1 109.0 REMARK 620 3 F3S B 304 S2 111.2 125.9 REMARK 620 4 F3S B 304 S3 112.1 98.8 98.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 225 SG REMARK 620 2 SF4 B 303 S1 105.6 REMARK 620 3 SF4 B 303 S3 128.4 105.1 REMARK 620 4 SF4 B 303 S4 106.4 103.2 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C1305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 101 NE2 REMARK 620 2 HEM C1305 NA 91.9 REMARK 620 3 HEM C1305 NB 97.3 89.2 REMARK 620 4 HEM C1305 NC 88.7 178.8 89.7 REMARK 620 5 HEM C1305 ND 86.7 91.5 175.8 89.5 REMARK 620 6 HIS D 79 NE2 173.0 93.6 87.1 85.9 88.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPH D 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TFZ C 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ABV RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEA RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEB RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AED RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEE RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEF RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH AN EMPTY QUINONE-BINDING POCKET REMARK 900 RELATED ID: 3AEG RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF CHAIN D IS REFERRED IN REF 2 IN A5GZW8, UNIPROT. DBREF 3AE1 A 1 622 UNP Q0QF01 DHSA_PIG 43 664 DBREF 3AE1 B 1 252 UNP Q007T0 DHSB_PIG 29 280 DBREF 3AE1 C 4 143 UNP D0VWV4 C560_PIG 30 169 DBREF 3AE1 D 34 136 UNP A5GZW8 DHSD_PIG 57 159 SEQRES 1 A 622 SER SER ALA LYS VAL SER ASP ALA ILE SER THR GLN TYR SEQRES 2 A 622 PRO VAL VAL ASP HIS GLU PHE ASP ALA VAL VAL VAL GLY SEQRES 3 A 622 ALA GLY GLY ALA GLY LEU ARG ALA ALA PHE GLY LEU SER SEQRES 4 A 622 GLU ALA GLY PHE ASN THR ALA CYS VAL THR LYS LEU PHE SEQRES 5 A 622 PRO THR ARG SER HIS THR VAL ALA ALA GLN GLY GLY ILE SEQRES 6 A 622 ASN ALA ALA LEU GLY ASN MET GLU GLU ASP ASN TRP ARG SEQRES 7 A 622 TRP HIS PHE TYR ASP THR VAL LYS GLY SER ASP TRP LEU SEQRES 8 A 622 GLY ASP GLN ASP ALA ILE HIS TYR MET THR GLU GLN ALA SEQRES 9 A 622 PRO ALA SER VAL VAL GLU LEU GLU ASN TYR GLY MET PRO SEQRES 10 A 622 PHE SER ARG THR GLU ASP GLY LYS ILE TYR GLN ARG ALA SEQRES 11 A 622 PHE GLY GLY GLN SER LEU LYS PHE GLY LYS GLY GLY GLN SEQRES 12 A 622 ALA HIS ARG CYS CYS CYS VAL ALA ASP ARG THR GLY HIS SEQRES 13 A 622 SER LEU LEU HIS THR LEU TYR GLY ARG SER LEU ARG TYR SEQRES 14 A 622 ASP THR SER TYR PHE VAL GLU TYR PHE ALA LEU ASP LEU SEQRES 15 A 622 LEU MET GLU ASN GLY GLU CYS ARG GLY VAL ILE ALA LEU SEQRES 16 A 622 CYS ILE GLU ASP GLY SER ILE HIS ARG ILE ARG ALA ARG SEQRES 17 A 622 ASN THR VAL VAL ALA THR GLY GLY TYR GLY ARG THR TYR SEQRES 18 A 622 PHE SER CYS THR SER ALA HIS THR SER THR GLY ASP GLY SEQRES 19 A 622 THR ALA MET VAL THR ARG ALA GLY LEU PRO CYS GLN ASP SEQRES 20 A 622 LEU GLU PHE VAL GLN PHE HIS PRO THR GLY ILE TYR GLY SEQRES 21 A 622 ALA GLY CYS LEU ILE THR GLU GLY CYS ARG GLY GLU GLY SEQRES 22 A 622 GLY ILE LEU ILE ASN SER GLN GLY GLU ARG PHE MET GLU SEQRES 23 A 622 ARG TYR ALA PRO VAL ALA LYS ASP LEU ALA SER ARG ASP SEQRES 24 A 622 VAL VAL SER ARG SER MET THR LEU GLU ILE ARG GLU GLY SEQRES 25 A 622 ARG GLY CYS GLY PRO GLU LYS ASP HIS VAL TYR LEU GLN SEQRES 26 A 622 LEU HIS HIS LEU PRO PRO GLU GLN LEU ALA VAL ARG LEU SEQRES 27 A 622 PRO GLY ILE SER GLU THR ALA MET ILE PHE ALA GLY VAL SEQRES 28 A 622 ASP VAL THR LYS GLU PRO ILE PRO VAL LEU PRO THR VAL SEQRES 29 A 622 HIS TYR ASN MET GLY GLY ILE PRO THR ASN TYR LYS GLY SEQRES 30 A 622 GLN VAL LEU ARG HIS VAL ASN GLY GLN ASP GLN VAL VAL SEQRES 31 A 622 PRO GLY LEU TYR ALA CYS GLY GLU ALA ALA CYS ALA SER SEQRES 32 A 622 VAL HIS GLY ALA ASN ARG LEU GLY ALA ASN SER LEU LEU SEQRES 33 A 622 ASP LEU VAL VAL PHE GLY ARG ALA CYS ALA LEU SER ILE SEQRES 34 A 622 ALA GLU SER CYS ARG PRO GLY ASP LYS VAL PRO SER ILE SEQRES 35 A 622 LYS PRO ASN ALA GLY GLU GLU SER VAL MET ASN LEU ASP SEQRES 36 A 622 LYS LEU ARG PHE ALA ASN GLY THR ILE ARG THR SER GLU SEQRES 37 A 622 LEU ARG LEU SER MET GLN LYS SER MET GLN SER HIS ALA SEQRES 38 A 622 ALA VAL PHE ARG VAL GLY SER VAL LEU GLN GLU GLY CYS SEQRES 39 A 622 GLU LYS ILE LEU ARG LEU TYR GLY ASP LEU GLN HIS LEU SEQRES 40 A 622 LYS THR PHE ASP ARG GLY MET VAL TRP ASN THR ASP LEU SEQRES 41 A 622 VAL GLU THR LEU GLU LEU GLN ASN LEU MET LEU CYS ALA SEQRES 42 A 622 LEU GLN THR ILE TYR GLY ALA GLU ALA ARG LYS GLU SER SEQRES 43 A 622 ARG GLY ALA HIS ALA ARG GLU ASP PHE LYS GLU ARG VAL SEQRES 44 A 622 ASP GLU TYR ASP TYR SER LYS PRO ILE GLN GLY GLN GLN SEQRES 45 A 622 LYS LYS PRO PHE GLN GLU HIS TRP ARG LYS HIS THR LEU SEQRES 46 A 622 SER TYR VAL ASP VAL LYS THR GLY LYS VAL SER LEU GLU SEQRES 47 A 622 TYR ARG PRO VAL ILE ASP LYS THR LEU ASN GLU ALA ASP SEQRES 48 A 622 CYS ALA THR VAL PRO PRO ALA ILE ARG SER TYR SEQRES 1 B 252 ALA GLN THR ALA ALA ALA THR ALA PRO ARG ILE LYS LYS SEQRES 2 B 252 PHE ALA ILE TYR ARG TRP ASP PRO ASP LYS THR GLY ASP SEQRES 3 B 252 LYS PRO HIS MET GLN THR TYR GLU ILE ASP LEU ASN ASN SEQRES 4 B 252 CYS GLY PRO MET VAL LEU ASP ALA LEU ILE LYS ILE LYS SEQRES 5 B 252 ASN GLU ILE ASP SER THR LEU THR PHE ARG ARG SER CYS SEQRES 6 B 252 ARG GLU GLY ILE CYS GLY SER CYS ALA MET ASN ILE ASN SEQRES 7 B 252 GLY GLY ASN THR LEU ALA CYS THR ARG ARG ILE ASP THR SEQRES 8 B 252 ASN LEU ASP LYS VAL SER LYS ILE TYR PRO LEU PRO HIS SEQRES 9 B 252 MET TYR VAL ILE LYS ASP LEU VAL PRO ASP LEU SER ASN SEQRES 10 B 252 PHE TYR ALA GLN TYR LYS SER ILE GLU PRO TYR LEU LYS SEQRES 11 B 252 LYS LYS ASP GLU SER GLN GLU GLY LYS GLN GLN TYR LEU SEQRES 12 B 252 GLN SER ILE GLU GLU ARG GLU LYS LEU ASP GLY LEU TYR SEQRES 13 B 252 GLU CYS ILE LEU CYS ALA CYS CYS SER THR SER CYS PRO SEQRES 14 B 252 SER TYR TRP TRP ASN GLY ASP LYS TYR LEU GLY PRO ALA SEQRES 15 B 252 VAL LEU MET GLN ALA TYR ARG TRP MET ILE ASP SER ARG SEQRES 16 B 252 ASP ASP PHE THR GLU GLU ARG LEU ALA LYS LEU GLN ASP SEQRES 17 B 252 PRO PHE SER LEU TYR ARG CYS HIS THR ILE MET ASN CYS SEQRES 18 B 252 THR GLY THR CYS PRO LYS GLY LEU ASN PRO GLY LYS ALA SEQRES 19 B 252 ILE ALA GLU ILE LYS LYS MET MET ALA THR TYR LYS GLU SEQRES 20 B 252 LYS LYS ALA SER ALA SEQRES 1 C 140 LEU GLY THR THR ALA LYS GLU GLU MET GLU ARG PHE TRP SEQRES 2 C 140 ASN LYS ASN LEU GLY SER ASN ARG PRO LEU SER PRO HIS SEQRES 3 C 140 ILE THR ILE TYR ARG TRP SER LEU PRO MET ALA MET SER SEQRES 4 C 140 ILE CYS HIS ARG GLY THR GLY ILE ALA LEU SER ALA GLY SEQRES 5 C 140 VAL SER LEU PHE GLY LEU SER ALA LEU LEU LEU PRO GLY SEQRES 6 C 140 ASN PHE GLU SER HIS LEU GLU LEU VAL LYS SER LEU CYS SEQRES 7 C 140 LEU GLY PRO THR LEU ILE TYR THR ALA LYS PHE GLY ILE SEQRES 8 C 140 VAL PHE PRO LEU MET TYR HIS THR TRP ASN GLY ILE ARG SEQRES 9 C 140 HIS LEU ILE TRP ASP LEU GLY LYS GLY LEU THR ILE PRO SEQRES 10 C 140 GLN LEU THR GLN SER GLY VAL VAL VAL LEU ILE LEU THR SEQRES 11 C 140 VAL LEU SER SER VAL GLY LEU ALA ALA MET SEQRES 1 D 103 ALA SER SER LYS ALA ALA SER LEU HIS TRP THR GLY GLU SEQRES 2 D 103 ARG VAL VAL SER VAL LEU LEU LEU GLY LEU LEU PRO ALA SEQRES 3 D 103 ALA TYR LEU ASN PRO CYS SER ALA MET ASP TYR SER LEU SEQRES 4 D 103 ALA ALA ALA LEU THR LEU HIS GLY HIS TRP GLY ILE GLY SEQRES 5 D 103 GLN VAL VAL THR ASP TYR VAL ARG GLY ASP ALA LEU GLN SEQRES 6 D 103 LYS ALA ALA LYS ALA GLY LEU LEU ALA LEU SER ALA PHE SEQRES 7 D 103 THR PHE ALA GLY LEU CYS TYR PHE ASN TYR HIS ASP VAL SEQRES 8 D 103 GLY ILE CYS LYS ALA VAL ALA MET LEU TRP LYS LEU HET FAD A 700 53 HET MLI A 701 7 HET FES B 302 4 HET SF4 B 303 8 HET F3S B 304 7 HET HEM C1305 43 HET TFZ C1201 19 HET EPH D1306 44 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MLI MALONATE ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM TFZ N-PHENYL-2-(TRIFLUOROMETHYL)BENZAMIDE HETNAM EPH L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL- HETNAM 2 EPH PHOSPHATIDYLETHANOLAMINE HETSYN HEM HEME FORMUL 5 FAD C27 H33 N9 O15 P2 FORMUL 6 MLI C3 H2 O4 2- FORMUL 7 FES FE2 S2 FORMUL 8 SF4 FE4 S4 FORMUL 9 F3S FE3 S4 FORMUL 10 HEM C34 H32 FE N4 O4 FORMUL 11 TFZ C14 H10 F3 N O FORMUL 12 EPH C39 H68 N O8 P HELIX 1 1 GLY A 28 ALA A 41 1 14 HELIX 2 2 PHE A 52 ALA A 61 5 10 HELIX 3 3 ASN A 76 SER A 88 1 13 HELIX 4 4 ASP A 93 GLY A 115 1 23 HELIX 5 5 LEU A 136 LYS A 140 5 5 HELIX 6 6 ARG A 153 LEU A 167 1 15 HELIX 7 7 TYR A 217 TYR A 221 5 5 HELIX 8 8 GLY A 232 ALA A 241 1 10 HELIX 9 9 GLU A 267 GLU A 272 1 6 HELIX 10 10 PHE A 284 ALA A 289 1 6 HELIX 11 11 ALA A 292 ALA A 296 5 5 HELIX 12 12 SER A 297 GLU A 311 1 15 HELIX 13 13 PRO A 330 LEU A 338 1 9 HELIX 14 14 LEU A 338 GLY A 350 1 13 HELIX 15 15 ASN A 413 GLU A 431 1 19 HELIX 16 16 GLY A 447 PHE A 459 1 13 HELIX 17 17 THR A 466 ALA A 481 1 16 HELIX 18 18 VAL A 486 ASP A 503 1 18 HELIX 19 19 ASN A 517 ARG A 543 1 27 HELIX 20 20 ASN B 38 CYS B 40 5 3 HELIX 21 21 MET B 43 ILE B 55 1 13 HELIX 22 22 LEU B 115 ILE B 125 1 11 HELIX 23 23 SER B 145 LYS B 151 1 7 HELIX 24 24 CYS B 168 ASN B 174 1 7 HELIX 25 25 LEU B 179 ILE B 192 1 14 HELIX 26 26 PHE B 198 LYS B 205 1 8 HELIX 27 27 MET B 219 CYS B 225 1 7 HELIX 28 28 ASN B 230 TYR B 245 1 16 HELIX 29 29 THR C 7 GLY C 21 1 15 HELIX 30 30 SER C 36 LEU C 66 1 31 HELIX 31 31 ASN C 69 LEU C 80 1 12 HELIX 32 32 GLY C 83 LEU C 113 1 31 HELIX 33 33 THR C 118 ALA C 142 1 25 HELIX 34 34 LYS D 37 ASN D 63 1 27 HELIX 35 35 CYS D 65 VAL D 92 1 28 HELIX 36 36 GLY D 94 ASP D 123 1 30 HELIX 37 37 GLY D 125 LYS D 135 1 11 SHEET 1 A 4 VAL A 15 GLU A 19 0 SHEET 2 A 4 SER A 201 ARG A 206 1 O ARG A 204 N HIS A 18 SHEET 3 A 4 CYS A 189 CYS A 196 -1 N ALA A 194 O HIS A 203 SHEET 4 A 4 TYR A 177 MET A 184 -1 N LEU A 183 O GLY A 191 SHEET 1 B 6 SER A 172 VAL A 175 0 SHEET 2 B 6 THR A 45 THR A 49 1 N CYS A 47 O PHE A 174 SHEET 3 B 6 ALA A 22 VAL A 25 1 N VAL A 24 O ALA A 46 SHEET 4 B 6 ASN A 209 VAL A 212 1 O VAL A 211 N VAL A 25 SHEET 5 B 6 GLN A 386 ALA A 395 1 O TYR A 394 N THR A 210 SHEET 6 B 6 GLN A 378 VAL A 383 -1 N ARG A 381 O GLN A 388 SHEET 1 C 3 ILE A 65 ASN A 66 0 SHEET 2 C 3 CYS A 147 CYS A 148 -1 O CYS A 148 N ILE A 65 SHEET 3 C 3 GLN A 128 ARG A 129 -1 N ARG A 129 O CYS A 147 SHEET 1 D 3 CYS A 245 GLN A 246 0 SHEET 2 D 3 LYS A 582 ASP A 589 -1 O SER A 586 N CYS A 245 SHEET 3 D 3 LYS A 594 PRO A 601 -1 O ARG A 600 N HIS A 583 SHEET 1 E 4 VAL A 251 ILE A 258 0 SHEET 2 E 4 ILE A 358 ASN A 367 -1 O HIS A 365 N GLN A 252 SHEET 3 E 4 VAL A 322 GLN A 325 -1 N VAL A 322 O VAL A 360 SHEET 4 E 4 ILE A 275 ILE A 277 -1 N ILE A 275 O GLN A 325 SHEET 1 F 2 ILE A 371 PRO A 372 0 SHEET 2 F 2 ALA A 400 CYS A 401 1 O CYS A 401 N ILE A 371 SHEET 1 G 2 ILE A 464 ARG A 465 0 SHEET 2 G 2 LEU A 507 LYS A 508 1 O LYS A 508 N ILE A 464 SHEET 1 H 2 PHE A 484 ARG A 485 0 SHEET 2 H 2 ALA A 551 ARG A 552 1 O ALA A 551 N ARG A 485 SHEET 1 I 5 HIS B 29 ASP B 36 0 SHEET 2 I 5 ILE B 11 ARG B 18 -1 N PHE B 14 O TYR B 33 SHEET 3 I 5 SER B 97 TYR B 100 1 O ILE B 99 N ALA B 15 SHEET 4 I 5 ALA B 74 ILE B 77 -1 N ASN B 76 O TYR B 100 SHEET 5 I 5 GLY B 80 LEU B 83 -1 O GLY B 80 N ILE B 77 SHEET 1 J 2 VAL B 107 LYS B 109 0 SHEET 2 J 2 VAL B 112 PRO B 113 -1 O VAL B 112 N LYS B 109 LINK NE2 HIS A 57 C8M FAD A 700 1555 1555 1.91 LINK SG CYS B 65 FE1 FES B 302 1555 1555 1.91 LINK SG CYS B 70 FE1 FES B 302 1555 1555 2.43 LINK SG CYS B 73 FE2 FES B 302 1555 1555 2.17 LINK SG CYS B 85 FE2 FES B 302 1555 1555 2.59 LINK SG CYS B 158 FE4 SF4 B 303 1555 1555 2.34 LINK SG CYS B 161 FE3 SF4 B 303 1555 1555 2.37 LINK SG CYS B 164 FE1 SF4 B 303 1555 1555 2.24 LINK SG CYS B 168 FE4 F3S B 304 1555 1555 2.44 LINK SG CYS B 215 FE3 F3S B 304 1555 1555 2.26 LINK SG CYS B 221 FE1 F3S B 304 1555 1555 2.21 LINK SG CYS B 225 FE2 SF4 B 303 1555 1555 2.41 LINK NE2 HIS C 101 FE HEM C1305 1555 1555 2.04 LINK FE HEM C1305 NE2 HIS D 79 1555 1555 2.20 SITE 1 AC1 36 GLY A 26 ALA A 27 GLY A 28 GLY A 29 SITE 2 AC1 36 ALA A 30 THR A 49 LYS A 50 LEU A 51 SITE 3 AC1 36 SER A 56 HIS A 57 THR A 58 ALA A 60 SITE 4 AC1 36 ALA A 61 GLN A 62 GLY A 63 GLY A 64 SITE 5 AC1 36 TYR A 177 PHE A 178 ALA A 179 ALA A 213 SITE 6 AC1 36 THR A 214 GLY A 215 THR A 225 ASP A 233 SITE 7 AC1 36 LEU A 264 HIS A 365 TYR A 366 GLY A 397 SITE 8 AC1 36 GLU A 398 ARG A 409 ALA A 412 ASN A 413 SITE 9 AC1 36 SER A 414 LEU A 415 LEU A 418 MLI A 701 SITE 1 AC2 6 SER B 64 CYS B 65 CYS B 70 GLY B 71 SITE 2 AC2 6 CYS B 73 CYS B 85 SITE 1 AC3 9 CYS B 158 ILE B 159 LEU B 160 CYS B 161 SITE 2 AC3 9 ALA B 162 CYS B 164 CYS B 225 PRO B 226 SITE 3 AC3 9 PRO B 231 SITE 1 AC4 10 CYS B 168 TYR B 178 PRO B 181 CYS B 215 SITE 2 AC4 10 HIS B 216 THR B 217 ILE B 218 MET B 219 SITE 3 AC4 10 ASN B 220 CYS B 221 SITE 1 AC5 10 PHE A 131 HIS A 254 LEU A 264 THR A 266 SITE 2 AC5 10 GLU A 267 ARG A 298 HIS A 365 ARG A 409 SITE 3 AC5 10 ALA A 412 FAD A 700 SITE 1 AC6 15 HIS C 45 ARG C 46 GLY C 49 LEU C 52 SITE 2 AC6 15 SER C 53 HIS C 101 HIS C 108 ARG D 47 SITE 3 AC6 15 SER D 50 LEU D 53 LEU D 54 LEU D 57 SITE 4 AC6 15 HIS D 79 GLY D 83 VAL D 87 SITE 1 AC7 4 TYR D 61 CYS D 127 ALA D 131 TRP D 134 SITE 1 AC8 10 PRO B 169 TRP B 173 HIS B 216 ILE B 218 SITE 2 AC8 10 TRP C 35 MET C 39 SER C 42 ILE C 43 SITE 3 AC8 10 ARG C 46 TYR D 91 CRYST1 71.465 84.065 294.622 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013993 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003394 0.00000