HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 04-FEB-10 3AEC TITLE CRYSTAL STRUCTURE OF PORCINE HEART MITOCHONDRIAL COMPLEX II BOUND WITH TITLE 2 2-IODO-N-(1-METHYLETHYL)-BENZAMID COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: FLAVOPROTEIN SUBUNIT OF COMPLEX II, FP; COMPND 6 EC: 1.3.5.1; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, COMPND 9 MITOCHONDRIAL; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: IRON-SULFUR SUBUNIT OF COMPLEX II, IP; COMPND 12 EC: 1.3.5.1; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, COMPND 15 MITOCHONDRIAL; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B LARGE COMPND 18 SUBUNIT, CYBL; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL COMPND 21 SUBUNIT, MITOCHONDRIAL; COMPND 22 CHAIN: D; COMPND 23 FRAGMENT: RESIDUES 57-159; COMPND 24 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B SMALL COMPND 25 SUBUNIT, CYBS, SUCCINATE-UBIQUINONE REDUCTASE MEMBRANE ANCHOR COMPND 26 SUBUNIT, QPS3, CII-4, SUCCINATE DEHYDROGENASE COMPLEX SUBUNIT D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: HEART; SOURCE 6 TISSUE: MUSCLE; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 9 ORGANISM_COMMON: PIG; SOURCE 10 ORGANISM_TAXID: 9823; SOURCE 11 ORGAN: HEART; SOURCE 12 TISSUE: MUSCLE; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 15 ORGANISM_COMMON: PIG; SOURCE 16 ORGANISM_TAXID: 9823; SOURCE 17 ORGAN: HEART; SOURCE 18 TISSUE: MUSCLE; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 21 ORGANISM_COMMON: PIG; SOURCE 22 ORGANISM_TAXID: 9823; SOURCE 23 ORGAN: HEART; SOURCE 24 TISSUE: MUSCLE KEYWDS RESPIRATORY COMPLEX II, INHIBITORS, ELECTRON TRANSPORT, IRON, IRON- KEYWDS 2 SULFUR, METAL-BINDING, MITOCHONDRION, MITOCHONDRION INNER MEMBRANE, KEYWDS 3 OXIDOREDUCTASE, TRANSIT PEPTIDE, TRANSPORT, TRICARBOXYLIC ACID KEYWDS 4 CYCLE, HEME, TRANSMEMBRANE, FAD-BINDING PROTEIN, OXIDOREDUCTASE- KEYWDS 5 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HARADA,T.SASAKI,M.SHINDO,Y.KIDO,D.K.INAOKA,J.OMORI,A.OSANAI, AUTHOR 2 K.SAKAMOTO,J.MAO,S.MATSUOKA,M.INOUE,T.HONMA,A.TANAKA,K.KITA REVDAT 4 06-NOV-24 3AEC 1 REMARK REVDAT 3 01-NOV-23 3AEC 1 REMARK LINK REVDAT 2 11-OCT-17 3AEC 1 REMARK REVDAT 1 09-FEB-11 3AEC 0 JRNL AUTH S.HARADA,T.SASAKI,M.SHINDO,Y.KIDO,D.K.INAOKA,J.OMORI, JRNL AUTH 2 A.OSANAI,K.SAKAMOTO,J.MAO,S.MATSUOKA,M.INOUE,T.HONMA, JRNL AUTH 3 A.TANAKA,K.KITA JRNL TITL CRYSTAL STRUCTURE OF PORCINE HEART MITOCHONDRIAL COMPLEX II JRNL TITL 2 BOUND WITH 2-IODO-N-(1-METHYLETHYL)-BENZAMID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 20635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1044 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1296 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.722 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.570 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 80.878 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.892 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.850 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8856 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12007 ; 0.857 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1088 ; 4.109 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 375 ;34.273 ;23.413 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1469 ;15.961 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;11.184 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1305 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6644 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5412 ; 0.091 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8677 ; 0.168 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3444 ; 0.129 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3313 ; 0.232 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1540 -17.6460 18.0330 REMARK 3 T TENSOR REMARK 3 T11: 0.5522 T22: 0.5090 REMARK 3 T33: 0.5063 T12: -0.0935 REMARK 3 T13: 0.0341 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.1076 L22: 1.4483 REMARK 3 L33: 3.7833 L12: -0.2911 REMARK 3 L13: -0.2003 L23: -0.2571 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: -0.1196 S13: -0.0807 REMARK 3 S21: -0.0363 S22: 0.0039 S23: 0.0784 REMARK 3 S31: -0.2227 S32: 0.0473 S33: 0.0173 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7720 8.6700 24.4790 REMARK 3 T TENSOR REMARK 3 T11: 0.9965 T22: 0.3321 REMARK 3 T33: 0.7753 T12: -0.0948 REMARK 3 T13: 0.0777 T23: -0.1458 REMARK 3 L TENSOR REMARK 3 L11: 3.4853 L22: 0.9462 REMARK 3 L33: 4.3308 L12: 0.4766 REMARK 3 L13: -2.3586 L23: -1.8573 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: -0.1994 S13: 0.4591 REMARK 3 S21: 0.4278 S22: -0.1250 S23: -0.0484 REMARK 3 S31: -1.1766 S32: -0.2764 S33: 0.0225 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 349 A 622 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6370 -10.9100 11.8190 REMARK 3 T TENSOR REMARK 3 T11: 0.6518 T22: 0.5941 REMARK 3 T33: 0.4938 T12: -0.1571 REMARK 3 T13: 0.0466 T23: 0.0561 REMARK 3 L TENSOR REMARK 3 L11: 1.7173 L22: 1.2215 REMARK 3 L33: 1.9840 L12: -0.2519 REMARK 3 L13: -0.5874 L23: -0.3545 REMARK 3 S TENSOR REMARK 3 S11: 0.0650 S12: 0.0698 S13: 0.0778 REMARK 3 S21: -0.0970 S22: -0.0601 S23: -0.1158 REMARK 3 S31: -0.4360 S32: 0.6017 S33: -0.0048 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5530 -12.2290 46.1780 REMARK 3 T TENSOR REMARK 3 T11: 0.4967 T22: 1.1072 REMARK 3 T33: 0.5436 T12: -0.2335 REMARK 3 T13: -0.0672 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.3339 L22: 3.9044 REMARK 3 L33: 4.0994 L12: 0.2013 REMARK 3 L13: -0.1574 L23: 1.2025 REMARK 3 S TENSOR REMARK 3 S11: 0.1067 S12: -0.7594 S13: 0.4341 REMARK 3 S21: 0.3036 S22: -0.1445 S23: -0.3739 REMARK 3 S31: -0.3441 S32: 1.2307 S33: 0.0378 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 107 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): -29.2450 -24.2350 40.0940 REMARK 3 T TENSOR REMARK 3 T11: 0.7165 T22: 0.4014 REMARK 3 T33: 0.6489 T12: -0.0129 REMARK 3 T13: 0.0093 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 1.9831 L22: 0.1409 REMARK 3 L33: 4.8302 L12: -0.8463 REMARK 3 L13: -1.4160 L23: -0.8366 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.1554 S13: -0.1276 REMARK 3 S21: -0.1332 S22: 0.0122 S23: 0.2473 REMARK 3 S31: 0.1302 S32: -0.6825 S33: 0.0134 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 47 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0490 -28.3250 51.4830 REMARK 3 T TENSOR REMARK 3 T11: 0.8911 T22: 0.4719 REMARK 3 T33: 0.4965 T12: 0.0296 REMARK 3 T13: 0.0220 T23: 0.2597 REMARK 3 L TENSOR REMARK 3 L11: 6.2029 L22: 2.6285 REMARK 3 L33: 5.8110 L12: -1.0358 REMARK 3 L13: -2.5986 L23: 3.1320 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 0.1544 S13: -0.1161 REMARK 3 S21: 0.3749 S22: 0.1252 S23: -0.0865 REMARK 3 S31: -0.1235 S32: 0.8510 S33: -0.1543 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 48 C 106 REMARK 3 ORIGIN FOR THE GROUP (A): -33.1920 -27.2840 84.3750 REMARK 3 T TENSOR REMARK 3 T11: 1.2874 T22: 0.4303 REMARK 3 T33: 0.4500 T12: -0.0127 REMARK 3 T13: 0.1409 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 3.0844 L22: 5.8499 REMARK 3 L33: 9.9826 L12: 2.4026 REMARK 3 L13: -1.0016 L23: -3.8458 REMARK 3 S TENSOR REMARK 3 S11: 0.0920 S12: -1.0272 S13: -0.1412 REMARK 3 S21: 1.0720 S22: -0.1474 S23: -0.3469 REMARK 3 S31: -0.6738 S32: 0.4760 S33: 0.0554 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 107 C 143 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6340 -12.9350 65.6630 REMARK 3 T TENSOR REMARK 3 T11: 0.8482 T22: 0.0339 REMARK 3 T33: 0.7371 T12: 0.0106 REMARK 3 T13: 0.1190 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 6.5006 L22: 6.4151 REMARK 3 L33: 22.6394 L12: 2.3213 REMARK 3 L13: -5.1226 L23: 0.6324 REMARK 3 S TENSOR REMARK 3 S11: 0.6890 S12: 0.3276 S13: 0.0842 REMARK 3 S21: 0.3952 S22: -0.0622 S23: 0.2594 REMARK 3 S31: -1.0672 S32: -0.6822 S33: -0.6268 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 35 D 67 REMARK 3 ORIGIN FOR THE GROUP (A): -44.6850 -28.8400 65.2490 REMARK 3 T TENSOR REMARK 3 T11: 0.6289 T22: 0.7127 REMARK 3 T33: 0.5839 T12: 0.0590 REMARK 3 T13: 0.0137 T23: 0.1573 REMARK 3 L TENSOR REMARK 3 L11: 5.0822 L22: 8.9335 REMARK 3 L33: 17.4591 L12: 2.3154 REMARK 3 L13: -2.7534 L23: 1.5244 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.0453 S13: -0.1615 REMARK 3 S21: -0.0987 S22: 0.2811 S23: 0.3507 REMARK 3 S31: -0.9138 S32: 0.4581 S33: -0.3272 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 68 D 96 REMARK 3 ORIGIN FOR THE GROUP (A): -34.1090 -35.4440 66.3630 REMARK 3 T TENSOR REMARK 3 T11: 1.0399 T22: 0.1457 REMARK 3 T33: 0.7114 T12: -0.0574 REMARK 3 T13: 0.1666 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.1542 L22: 2.2726 REMARK 3 L33: 7.0111 L12: 1.2182 REMARK 3 L13: 2.1779 L23: -1.6643 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: 0.0802 S13: -0.6772 REMARK 3 S21: 0.1493 S22: -0.3406 S23: 0.2312 REMARK 3 S31: 0.1841 S32: 0.2412 S33: 0.3567 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 97 D 124 REMARK 3 ORIGIN FOR THE GROUP (A): -36.8810 -42.0510 75.1390 REMARK 3 T TENSOR REMARK 3 T11: 1.1392 T22: 0.2742 REMARK 3 T33: 0.7578 T12: -0.0285 REMARK 3 T13: 0.2537 T23: 0.2065 REMARK 3 L TENSOR REMARK 3 L11: 6.4533 L22: 6.1754 REMARK 3 L33: 22.3815 L12: -1.4955 REMARK 3 L13: -12.2388 L23: 5.0736 REMARK 3 S TENSOR REMARK 3 S11: 0.0688 S12: -0.7801 S13: 0.1371 REMARK 3 S21: 0.0537 S22: 0.2972 S23: -0.8124 REMARK 3 S31: 0.6590 S32: 0.0499 S33: -0.3660 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 125 D 136 REMARK 3 ORIGIN FOR THE GROUP (A): -42.0140 -26.3370 88.4730 REMARK 3 T TENSOR REMARK 3 T11: 1.3137 T22: 0.4731 REMARK 3 T33: 0.9588 T12: -0.0346 REMARK 3 T13: 0.0999 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 36.0313 L22: 33.1170 REMARK 3 L33: 12.1283 L12: -0.6746 REMARK 3 L13: -12.2028 L23: 12.3283 REMARK 3 S TENSOR REMARK 3 S11: 1.4674 S12: -2.0795 S13: 2.3572 REMARK 3 S21: -1.0722 S22: -0.4162 S23: 2.2929 REMARK 3 S31: -1.2862 S32: -1.7525 S33: -1.0512 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3AEC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000029146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.30001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20826 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4310 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM HEPES-NAOH, 7% PEG 4000, 200MM REMARK 280 SUCROSE, 100MM NACL, 10MM CACL2, 0.5MM EDTA, 3% 1,6-HAXANEDIOL, REMARK 280 0.5% N-DECYL-BETA-D-MALTOSIDE, PH 7.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.48300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 147.62700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.99700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 147.62700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.48300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.99700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THESE COMPLEX FORMS MITOCHONDRIAL RESPIRATORY COMPLEX II. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 ALA B 8 REMARK 465 LYS B 248 REMARK 465 LYS B 249 REMARK 465 ALA B 250 REMARK 465 SER B 251 REMARK 465 ALA B 252 REMARK 465 LEU C 4 REMARK 465 GLY C 5 REMARK 465 ALA D 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 73 FE2 FES B 302 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 11 -22.64 65.23 REMARK 500 ARG A 55 32.39 -89.71 REMARK 500 SER A 56 -138.60 -76.69 REMARK 500 ALA A 68 57.44 -91.31 REMARK 500 TRP A 90 17.63 59.30 REMARK 500 THR A 121 -169.90 -112.63 REMARK 500 ARG A 146 24.98 -140.91 REMARK 500 VAL A 150 58.52 -107.57 REMARK 500 ALA A 151 72.50 43.68 REMARK 500 ASP A 152 -17.41 69.72 REMARK 500 ARG A 153 52.12 -114.53 REMARK 500 MET A 285 45.92 -78.47 REMARK 500 TYR A 288 -60.81 -96.82 REMARK 500 LYS A 293 -133.77 49.69 REMARK 500 ARG A 313 44.18 -102.28 REMARK 500 ASP A 320 -36.16 -134.68 REMARK 500 HIS A 365 -72.30 -131.54 REMARK 500 ALA A 481 55.33 -95.62 REMARK 500 TRP A 516 74.94 46.97 REMARK 500 PHE A 555 77.26 -111.41 REMARK 500 GLN A 569 -73.24 -159.35 REMARK 500 GLN A 577 32.74 -91.69 REMARK 500 ASP B 22 54.70 -102.27 REMARK 500 THR B 24 95.06 54.61 REMARK 500 ASN B 39 46.09 -104.56 REMARK 500 GLU B 54 -60.37 -133.93 REMARK 500 SER B 64 -83.54 -161.86 REMARK 500 ARG B 66 40.75 38.86 REMARK 500 ILE B 69 -0.29 -141.22 REMARK 500 CYS B 73 46.15 -79.41 REMARK 500 LYS B 109 133.88 -171.78 REMARK 500 ASP B 110 85.43 26.37 REMARK 500 GLU B 126 79.16 58.79 REMARK 500 ASP B 133 76.67 -103.83 REMARK 500 LYS B 139 -35.27 -136.92 REMARK 500 LEU B 155 -44.90 -135.47 REMARK 500 PHE B 198 49.37 -83.93 REMARK 500 GLN B 207 40.87 -79.04 REMARK 500 THR C 7 -169.96 -107.52 REMARK 500 HIS C 29 -89.29 -106.45 REMARK 500 CYS C 81 121.69 -38.05 REMARK 500 ALA C 142 40.69 -105.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPH D 1306 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 FES B 302 S1 123.0 REMARK 620 3 FES B 302 S2 112.7 90.7 REMARK 620 4 CYS B 70 SG 109.0 104.3 116.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 158 SG REMARK 620 2 SF4 B 303 S2 97.9 REMARK 620 3 SF4 B 303 S3 103.9 106.0 REMARK 620 4 SF4 B 303 S4 136.2 104.7 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 SF4 B 303 S1 123.9 REMARK 620 3 SF4 B 303 S3 107.4 105.3 REMARK 620 4 SF4 B 303 S4 109.0 104.5 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 164 SG REMARK 620 2 SF4 B 303 S1 93.0 REMARK 620 3 SF4 B 303 S2 107.5 104.9 REMARK 620 4 SF4 B 303 S3 136.0 105.1 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 168 SG REMARK 620 2 F3S B 304 S2 83.6 REMARK 620 3 F3S B 304 S3 88.9 99.5 REMARK 620 4 F3S B 304 S4 98.3 160.0 100.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 215 SG REMARK 620 2 F3S B 304 S1 102.2 REMARK 620 3 F3S B 304 S2 101.5 122.0 REMARK 620 4 F3S B 304 S3 134.5 100.3 99.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 221 SG REMARK 620 2 F3S B 304 S1 106.2 REMARK 620 3 F3S B 304 S3 123.8 100.3 REMARK 620 4 F3S B 304 S4 104.7 123.5 100.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 225 SG REMARK 620 2 SF4 B 303 S1 97.4 REMARK 620 3 SF4 B 303 S2 132.0 105.1 REMARK 620 4 SF4 B 303 S4 109.6 104.7 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C1305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 101 NE2 REMARK 620 2 HEM C1305 NA 96.3 REMARK 620 3 HEM C1305 NB 96.3 88.5 REMARK 620 4 HEM C1305 NC 84.5 177.9 89.5 REMARK 620 5 HEM C1305 ND 88.4 91.4 175.3 90.6 REMARK 620 6 HIS D 79 NE2 172.5 88.9 89.2 90.4 86.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPH D 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EBM C 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ABV RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEA RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEB RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AED RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEE RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEF RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH AN EMPTY QUINONE-BINDING POCKET REMARK 900 RELATED ID: 3AEG RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF CHAIN D IS REFERRED IN REF 2 IN A5GZW8, UNIPROT. DBREF 3AEC A 1 622 UNP Q0QF01 DHSA_PIG 43 664 DBREF 3AEC B 1 252 UNP Q007T0 DHSB_PIG 29 280 DBREF 3AEC C 4 143 UNP D0VWV4 C560_PIG 30 169 DBREF 3AEC D 34 136 UNP A5GZW8 DHSD_PIG 57 159 SEQRES 1 A 622 SER SER ALA LYS VAL SER ASP ALA ILE SER THR GLN TYR SEQRES 2 A 622 PRO VAL VAL ASP HIS GLU PHE ASP ALA VAL VAL VAL GLY SEQRES 3 A 622 ALA GLY GLY ALA GLY LEU ARG ALA ALA PHE GLY LEU SER SEQRES 4 A 622 GLU ALA GLY PHE ASN THR ALA CYS VAL THR LYS LEU PHE SEQRES 5 A 622 PRO THR ARG SER HIS THR VAL ALA ALA GLN GLY GLY ILE SEQRES 6 A 622 ASN ALA ALA LEU GLY ASN MET GLU GLU ASP ASN TRP ARG SEQRES 7 A 622 TRP HIS PHE TYR ASP THR VAL LYS GLY SER ASP TRP LEU SEQRES 8 A 622 GLY ASP GLN ASP ALA ILE HIS TYR MET THR GLU GLN ALA SEQRES 9 A 622 PRO ALA SER VAL VAL GLU LEU GLU ASN TYR GLY MET PRO SEQRES 10 A 622 PHE SER ARG THR GLU ASP GLY LYS ILE TYR GLN ARG ALA SEQRES 11 A 622 PHE GLY GLY GLN SER LEU LYS PHE GLY LYS GLY GLY GLN SEQRES 12 A 622 ALA HIS ARG CYS CYS CYS VAL ALA ASP ARG THR GLY HIS SEQRES 13 A 622 SER LEU LEU HIS THR LEU TYR GLY ARG SER LEU ARG TYR SEQRES 14 A 622 ASP THR SER TYR PHE VAL GLU TYR PHE ALA LEU ASP LEU SEQRES 15 A 622 LEU MET GLU ASN GLY GLU CYS ARG GLY VAL ILE ALA LEU SEQRES 16 A 622 CYS ILE GLU ASP GLY SER ILE HIS ARG ILE ARG ALA ARG SEQRES 17 A 622 ASN THR VAL VAL ALA THR GLY GLY TYR GLY ARG THR TYR SEQRES 18 A 622 PHE SER CYS THR SER ALA HIS THR SER THR GLY ASP GLY SEQRES 19 A 622 THR ALA MET VAL THR ARG ALA GLY LEU PRO CYS GLN ASP SEQRES 20 A 622 LEU GLU PHE VAL GLN PHE HIS PRO THR GLY ILE TYR GLY SEQRES 21 A 622 ALA GLY CYS LEU ILE THR GLU GLY CYS ARG GLY GLU GLY SEQRES 22 A 622 GLY ILE LEU ILE ASN SER GLN GLY GLU ARG PHE MET GLU SEQRES 23 A 622 ARG TYR ALA PRO VAL ALA LYS ASP LEU ALA SER ARG ASP SEQRES 24 A 622 VAL VAL SER ARG SER MET THR LEU GLU ILE ARG GLU GLY SEQRES 25 A 622 ARG GLY CYS GLY PRO GLU LYS ASP HIS VAL TYR LEU GLN SEQRES 26 A 622 LEU HIS HIS LEU PRO PRO GLU GLN LEU ALA VAL ARG LEU SEQRES 27 A 622 PRO GLY ILE SER GLU THR ALA MET ILE PHE ALA GLY VAL SEQRES 28 A 622 ASP VAL THR LYS GLU PRO ILE PRO VAL LEU PRO THR VAL SEQRES 29 A 622 HIS TYR ASN MET GLY GLY ILE PRO THR ASN TYR LYS GLY SEQRES 30 A 622 GLN VAL LEU ARG HIS VAL ASN GLY GLN ASP GLN VAL VAL SEQRES 31 A 622 PRO GLY LEU TYR ALA CYS GLY GLU ALA ALA CYS ALA SER SEQRES 32 A 622 VAL HIS GLY ALA ASN ARG LEU GLY ALA ASN SER LEU LEU SEQRES 33 A 622 ASP LEU VAL VAL PHE GLY ARG ALA CYS ALA LEU SER ILE SEQRES 34 A 622 ALA GLU SER CYS ARG PRO GLY ASP LYS VAL PRO SER ILE SEQRES 35 A 622 LYS PRO ASN ALA GLY GLU GLU SER VAL MET ASN LEU ASP SEQRES 36 A 622 LYS LEU ARG PHE ALA ASN GLY THR ILE ARG THR SER GLU SEQRES 37 A 622 LEU ARG LEU SER MET GLN LYS SER MET GLN SER HIS ALA SEQRES 38 A 622 ALA VAL PHE ARG VAL GLY SER VAL LEU GLN GLU GLY CYS SEQRES 39 A 622 GLU LYS ILE LEU ARG LEU TYR GLY ASP LEU GLN HIS LEU SEQRES 40 A 622 LYS THR PHE ASP ARG GLY MET VAL TRP ASN THR ASP LEU SEQRES 41 A 622 VAL GLU THR LEU GLU LEU GLN ASN LEU MET LEU CYS ALA SEQRES 42 A 622 LEU GLN THR ILE TYR GLY ALA GLU ALA ARG LYS GLU SER SEQRES 43 A 622 ARG GLY ALA HIS ALA ARG GLU ASP PHE LYS GLU ARG VAL SEQRES 44 A 622 ASP GLU TYR ASP TYR SER LYS PRO ILE GLN GLY GLN GLN SEQRES 45 A 622 LYS LYS PRO PHE GLN GLU HIS TRP ARG LYS HIS THR LEU SEQRES 46 A 622 SER TYR VAL ASP VAL LYS THR GLY LYS VAL SER LEU GLU SEQRES 47 A 622 TYR ARG PRO VAL ILE ASP LYS THR LEU ASN GLU ALA ASP SEQRES 48 A 622 CYS ALA THR VAL PRO PRO ALA ILE ARG SER TYR SEQRES 1 B 252 ALA GLN THR ALA ALA ALA THR ALA PRO ARG ILE LYS LYS SEQRES 2 B 252 PHE ALA ILE TYR ARG TRP ASP PRO ASP LYS THR GLY ASP SEQRES 3 B 252 LYS PRO HIS MET GLN THR TYR GLU ILE ASP LEU ASN ASN SEQRES 4 B 252 CYS GLY PRO MET VAL LEU ASP ALA LEU ILE LYS ILE LYS SEQRES 5 B 252 ASN GLU ILE ASP SER THR LEU THR PHE ARG ARG SER CYS SEQRES 6 B 252 ARG GLU GLY ILE CYS GLY SER CYS ALA MET ASN ILE ASN SEQRES 7 B 252 GLY GLY ASN THR LEU ALA CYS THR ARG ARG ILE ASP THR SEQRES 8 B 252 ASN LEU ASP LYS VAL SER LYS ILE TYR PRO LEU PRO HIS SEQRES 9 B 252 MET TYR VAL ILE LYS ASP LEU VAL PRO ASP LEU SER ASN SEQRES 10 B 252 PHE TYR ALA GLN TYR LYS SER ILE GLU PRO TYR LEU LYS SEQRES 11 B 252 LYS LYS ASP GLU SER GLN GLU GLY LYS GLN GLN TYR LEU SEQRES 12 B 252 GLN SER ILE GLU GLU ARG GLU LYS LEU ASP GLY LEU TYR SEQRES 13 B 252 GLU CYS ILE LEU CYS ALA CYS CYS SER THR SER CYS PRO SEQRES 14 B 252 SER TYR TRP TRP ASN GLY ASP LYS TYR LEU GLY PRO ALA SEQRES 15 B 252 VAL LEU MET GLN ALA TYR ARG TRP MET ILE ASP SER ARG SEQRES 16 B 252 ASP ASP PHE THR GLU GLU ARG LEU ALA LYS LEU GLN ASP SEQRES 17 B 252 PRO PHE SER LEU TYR ARG CYS HIS THR ILE MET ASN CYS SEQRES 18 B 252 THR GLY THR CYS PRO LYS GLY LEU ASN PRO GLY LYS ALA SEQRES 19 B 252 ILE ALA GLU ILE LYS LYS MET MET ALA THR TYR LYS GLU SEQRES 20 B 252 LYS LYS ALA SER ALA SEQRES 1 C 140 LEU GLY THR THR ALA LYS GLU GLU MET GLU ARG PHE TRP SEQRES 2 C 140 ASN LYS ASN LEU GLY SER ASN ARG PRO LEU SER PRO HIS SEQRES 3 C 140 ILE THR ILE TYR ARG TRP SER LEU PRO MET ALA MET SER SEQRES 4 C 140 ILE CYS HIS ARG GLY THR GLY ILE ALA LEU SER ALA GLY SEQRES 5 C 140 VAL SER LEU PHE GLY LEU SER ALA LEU LEU LEU PRO GLY SEQRES 6 C 140 ASN PHE GLU SER HIS LEU GLU LEU VAL LYS SER LEU CYS SEQRES 7 C 140 LEU GLY PRO THR LEU ILE TYR THR ALA LYS PHE GLY ILE SEQRES 8 C 140 VAL PHE PRO LEU MET TYR HIS THR TRP ASN GLY ILE ARG SEQRES 9 C 140 HIS LEU ILE TRP ASP LEU GLY LYS GLY LEU THR ILE PRO SEQRES 10 C 140 GLN LEU THR GLN SER GLY VAL VAL VAL LEU ILE LEU THR SEQRES 11 C 140 VAL LEU SER SER VAL GLY LEU ALA ALA MET SEQRES 1 D 103 ALA SER SER LYS ALA ALA SER LEU HIS TRP THR GLY GLU SEQRES 2 D 103 ARG VAL VAL SER VAL LEU LEU LEU GLY LEU LEU PRO ALA SEQRES 3 D 103 ALA TYR LEU ASN PRO CYS SER ALA MET ASP TYR SER LEU SEQRES 4 D 103 ALA ALA ALA LEU THR LEU HIS GLY HIS TRP GLY ILE GLY SEQRES 5 D 103 GLN VAL VAL THR ASP TYR VAL ARG GLY ASP ALA LEU GLN SEQRES 6 D 103 LYS ALA ALA LYS ALA GLY LEU LEU ALA LEU SER ALA PHE SEQRES 7 D 103 THR PHE ALA GLY LEU CYS TYR PHE ASN TYR HIS ASP VAL SEQRES 8 D 103 GLY ILE CYS LYS ALA VAL ALA MET LEU TRP LYS LEU HET FAD A 700 53 HET FES B 302 4 HET SF4 B 303 8 HET F3S B 304 7 HET HEM C1305 43 HET EBM C1201 13 HET EPH D1306 44 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM EBM 2-IODO-N-(1-METHYLETHYL)BENZAMIDE HETNAM EPH L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL- HETNAM 2 EPH PHOSPHATIDYLETHANOLAMINE HETSYN HEM HEME FORMUL 5 FAD C27 H33 N9 O15 P2 FORMUL 6 FES FE2 S2 FORMUL 7 SF4 FE4 S4 FORMUL 8 F3S FE3 S4 FORMUL 9 HEM C34 H32 FE N4 O4 FORMUL 10 EBM C10 H12 I N O FORMUL 11 EPH C39 H68 N O8 P HELIX 1 1 GLY A 28 GLY A 42 1 15 HELIX 2 2 PHE A 52 SER A 56 5 5 HELIX 3 3 HIS A 57 ALA A 61 5 5 HELIX 4 4 ASN A 76 SER A 88 1 13 HELIX 5 5 ASP A 93 GLY A 115 1 23 HELIX 6 6 ARG A 153 LEU A 167 1 15 HELIX 7 7 TYR A 217 TYR A 221 5 5 HELIX 8 8 GLY A 232 ALA A 241 1 10 HELIX 9 9 GLU A 267 GLY A 273 1 7 HELIX 10 10 SER A 297 GLY A 312 1 16 HELIX 11 11 PRO A 330 LEU A 338 1 9 HELIX 12 12 LEU A 338 PHE A 348 1 11 HELIX 13 13 ASN A 413 GLU A 431 1 19 HELIX 14 14 GLY A 447 PHE A 459 1 13 HELIX 15 15 THR A 466 ALA A 481 1 16 HELIX 16 16 VAL A 486 ASP A 503 1 18 HELIX 17 17 ASN A 517 ARG A 543 1 27 HELIX 18 18 PRO A 575 HIS A 579 5 5 HELIX 19 19 MET B 43 GLU B 54 1 12 HELIX 20 20 LEU B 115 ILE B 125 1 11 HELIX 21 21 ASP B 133 GLU B 137 5 5 HELIX 22 22 SER B 145 LYS B 151 1 7 HELIX 23 23 CYS B 164 SER B 167 5 4 HELIX 24 24 CYS B 168 ASN B 174 1 7 HELIX 25 25 GLY B 180 TRP B 190 1 11 HELIX 26 26 PHE B 198 LYS B 205 1 8 HELIX 27 27 CYS B 221 CYS B 225 5 5 HELIX 28 28 ASN B 230 TYR B 245 1 16 HELIX 29 29 LYS C 9 LEU C 20 1 12 HELIX 30 30 SER C 36 LEU C 66 1 31 HELIX 31 31 ASN C 69 LEU C 80 1 12 HELIX 32 32 THR C 85 GLY C 114 1 30 HELIX 33 33 THR C 118 ALA C 142 1 25 HELIX 34 34 ALA D 38 GLY D 55 1 18 HELIX 35 35 LEU D 56 ASN D 63 1 8 HELIX 36 36 CYS D 65 VAL D 92 1 28 HELIX 37 37 ASP D 95 HIS D 122 1 28 HELIX 38 38 GLY D 125 LYS D 135 1 11 SHEET 1 A 6 SER A 172 VAL A 175 0 SHEET 2 A 6 THR A 45 THR A 49 1 N CYS A 47 O PHE A 174 SHEET 3 A 6 VAL A 15 VAL A 25 1 N ALA A 22 O ALA A 46 SHEET 4 A 6 ILE A 202 VAL A 212 1 O VAL A 211 N VAL A 23 SHEET 5 A 6 GLU A 188 CYS A 196 -1 N ALA A 194 O HIS A 203 SHEET 6 A 6 TYR A 177 GLU A 185 -1 N PHE A 178 O LEU A 195 SHEET 1 B 6 SER A 172 VAL A 175 0 SHEET 2 B 6 THR A 45 THR A 49 1 N CYS A 47 O PHE A 174 SHEET 3 B 6 VAL A 15 VAL A 25 1 N ALA A 22 O ALA A 46 SHEET 4 B 6 ILE A 202 VAL A 212 1 O VAL A 211 N VAL A 23 SHEET 5 B 6 GLN A 386 ALA A 395 1 O TYR A 394 N THR A 210 SHEET 6 B 6 GLN A 378 VAL A 383 -1 N VAL A 379 O VAL A 390 SHEET 1 C 3 ILE A 65 ASN A 66 0 SHEET 2 C 3 HIS A 145 CYS A 148 -1 O CYS A 148 N ILE A 65 SHEET 3 C 3 GLN A 128 ALA A 130 -1 N ARG A 129 O CYS A 147 SHEET 1 D 3 CYS A 245 GLN A 246 0 SHEET 2 D 3 LYS A 582 VAL A 588 -1 O SER A 586 N CYS A 245 SHEET 3 D 3 VAL A 595 PRO A 601 -1 O ARG A 600 N HIS A 583 SHEET 1 E 2 VAL A 251 HIS A 254 0 SHEET 2 E 2 THR A 363 ASN A 367 -1 O HIS A 365 N GLN A 252 SHEET 1 F 3 ILE A 275 ILE A 277 0 SHEET 2 F 3 VAL A 322 GLN A 325 -1 O GLN A 325 N ILE A 275 SHEET 3 F 3 ILE A 358 VAL A 360 -1 O ILE A 358 N LEU A 324 SHEET 1 G 2 ILE A 371 PRO A 372 0 SHEET 2 G 2 ALA A 400 CYS A 401 1 O CYS A 401 N ILE A 371 SHEET 1 H 2 ILE A 464 ARG A 465 0 SHEET 2 H 2 LEU A 507 LYS A 508 1 O LYS A 508 N ILE A 464 SHEET 1 I 2 PHE A 484 ARG A 485 0 SHEET 2 I 2 ALA A 551 ARG A 552 1 O ALA A 551 N ARG A 485 SHEET 1 J 5 HIS B 29 ASP B 36 0 SHEET 2 J 5 ILE B 11 ARG B 18 -1 N LYS B 12 O ILE B 35 SHEET 3 J 5 SER B 97 TYR B 100 1 O SER B 97 N ALA B 15 SHEET 4 J 5 ALA B 74 ILE B 77 -1 N ASN B 76 O TYR B 100 SHEET 5 J 5 ASN B 81 LEU B 83 -1 O THR B 82 N MET B 75 SHEET 1 K 2 VAL B 107 LYS B 109 0 SHEET 2 K 2 VAL B 112 PRO B 113 -1 O VAL B 112 N ILE B 108 LINK NE2 HIS A 57 C8M FAD A 700 1555 1555 2.01 LINK SG CYS B 65 FE1 FES B 302 1555 1555 2.17 LINK SG CYS B 70 FE1 FES B 302 1555 1555 2.11 LINK SG CYS B 158 FE1 SF4 B 303 1555 1555 2.42 LINK SG CYS B 161 FE2 SF4 B 303 1555 1555 2.26 LINK SG CYS B 164 FE4 SF4 B 303 1555 1555 2.61 LINK SG CYS B 168 FE4 F3S B 304 1555 1555 2.68 LINK SG CYS B 215 FE1 F3S B 304 1555 1555 2.44 LINK SG CYS B 221 FE3 F3S B 304 1555 1555 2.46 LINK SG CYS B 225 FE3 SF4 B 303 1555 1555 2.60 LINK NE2 HIS C 101 FE HEM C1305 1555 1555 2.08 LINK FE HEM C1305 NE2 HIS D 79 1555 1555 2.32 SITE 1 AC1 30 GLY A 26 ALA A 27 GLY A 28 GLY A 29 SITE 2 AC1 30 ALA A 30 THR A 49 LYS A 50 LEU A 51 SITE 3 AC1 30 SER A 56 HIS A 57 THR A 58 ALA A 60 SITE 4 AC1 30 ALA A 61 GLN A 62 GLY A 63 GLY A 64 SITE 5 AC1 30 TYR A 177 PHE A 178 ALA A 179 THR A 214 SITE 6 AC1 30 GLY A 215 THR A 225 SER A 226 ASP A 233 SITE 7 AC1 30 GLU A 398 ARG A 409 ALA A 412 SER A 414 SITE 8 AC1 30 LEU A 415 LEU A 418 SITE 1 AC2 8 SER B 64 CYS B 65 ARG B 66 GLY B 68 SITE 2 AC2 8 CYS B 70 GLY B 71 CYS B 73 CYS B 85 SITE 1 AC3 8 CYS B 158 ILE B 159 CYS B 161 ALA B 162 SITE 2 AC3 8 CYS B 164 ALA B 182 CYS B 225 PRO B 226 SITE 1 AC4 10 CYS B 168 TYR B 178 PRO B 181 CYS B 215 SITE 2 AC4 10 HIS B 216 THR B 217 ILE B 218 MET B 219 SITE 3 AC4 10 ASN B 220 CYS B 221 SITE 1 AC5 12 HIS B 216 HIS C 45 ARG C 46 GLY C 49 SITE 2 AC5 12 LEU C 52 SER C 53 HIS C 101 HIS C 108 SITE 3 AC5 12 LEU D 53 LEU D 57 HIS D 79 GLY D 83 SITE 1 AC6 8 LEU C 140 ALA D 60 TYR D 61 LEU D 62 SITE 2 AC6 8 PRO D 64 CYS D 127 ALA D 131 TRP D 134 SITE 1 AC7 8 SER B 170 TRP B 173 HIS B 216 ILE B 218 SITE 2 AC7 8 SER C 42 ARG C 46 ASP D 90 TYR D 91 CRYST1 70.966 83.994 295.254 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014091 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003387 0.00000