HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 04-FEB-10 3AEE TITLE CRYSTAL STRUCTURE OF PORCINE HEART MITOCHONDRIAL COMPLEX II BOUND WITH TITLE 2 ATPENIN A5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: FLAVOPROTEIN SUBUNIT OF COMPLEX II, FP; COMPND 6 EC: 1.3.5.1; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, COMPND 9 MITOCHONDRIAL; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: IRON-SULFUR SUBUNIT OF COMPLEX II, IP; COMPND 12 EC: 1.3.5.1; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, COMPND 15 MITOCHONDRIAL; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B LARGE COMPND 18 SUBUNIT, CYBL; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL COMPND 21 SUBUNIT, MITOCHONDRIAL; COMPND 22 CHAIN: D; COMPND 23 FRAGMENT: RESIDUES 57-159; COMPND 24 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B SMALL COMPND 25 SUBUNIT, CYBS, SUCCINATE-UBIQUINONE REDUCTASE MEMBRANE ANCHOR COMPND 26 SUBUNIT, QPS3, CII-4, SUCCINATE DEHYDROGENASE COMPLEX SUBUNIT D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: HEART; SOURCE 6 TISSUE: MUSCLE; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 9 ORGANISM_COMMON: PIG; SOURCE 10 ORGANISM_TAXID: 9823; SOURCE 11 ORGAN: HEART; SOURCE 12 TISSUE: MUSCLE; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 15 ORGANISM_COMMON: PIG; SOURCE 16 ORGANISM_TAXID: 9823; SOURCE 17 ORGAN: HEART; SOURCE 18 TISSUE: MUSCLE; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 21 ORGANISM_COMMON: PIG; SOURCE 22 ORGANISM_TAXID: 9823; SOURCE 23 ORGAN: HEART; SOURCE 24 TISSUE: MUSCLE KEYWDS RESPIRATORY COMPLEX II, INHIBITORS, ELECTRON TRANSPORT, IRON, IRON- KEYWDS 2 SULFUR, METAL-BINDING, MITOCHONDRION, MITOCHONDRION INNER MEMBRANE, KEYWDS 3 OXIDOREDUCTASE, TRANSIT PEPTIDE, TRANSPORT, TRICARBOXYLIC ACID KEYWDS 4 CYCLE, HEME, TRANSMEMBRANE, FAD-BINDING PROTEIN, OXIDOREDUCTASE- KEYWDS 5 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HARADA,T.SASAKI,M.SHINDO,Y.KIDO,D.K.INAOKA,J.OMORI,A.OSANAI, AUTHOR 2 K.SAKAMOTO,J.MAO,S.MATSUOKA,M.INOUE,T.HONMA,A.TANAKA,K.KITA REVDAT 4 13-NOV-24 3AEE 1 REMARK REVDAT 3 01-NOV-23 3AEE 1 REMARK LINK REVDAT 2 11-OCT-17 3AEE 1 REMARK REVDAT 1 09-FEB-11 3AEE 0 JRNL AUTH S.HARADA,T.SASAKI,M.SHINDO,Y.KIDO,D.K.INAOKA,J.OMORI, JRNL AUTH 2 A.OSANAI,K.SAKAMOTO,J.MAO,S.MATSUOKA,M.INOUE,T.HONMA, JRNL AUTH 3 A.TANAKA,K.KITA JRNL TITL CRYSTAL STRUCTURE OF PORCINE HEART MITOCHONDRIAL COMPLEX II JRNL TITL 2 BOUND WITH ATPENIN A5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 27888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1436 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1808 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 106.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.71000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.535 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.456 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 55.552 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8823 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11974 ; 1.110 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1088 ; 5.477 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 375 ;35.032 ;23.413 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1469 ;19.184 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;17.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1306 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6640 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5410 ; 0.248 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8675 ; 0.463 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3413 ; 0.481 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3282 ; 0.839 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6960 -17.3200 18.0500 REMARK 3 T TENSOR REMARK 3 T11: 0.1212 T22: 0.2789 REMARK 3 T33: 0.4602 T12: -0.0551 REMARK 3 T13: 0.0275 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 2.1428 L22: 1.0654 REMARK 3 L33: 3.6172 L12: -0.4470 REMARK 3 L13: -0.2137 L23: -0.4965 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: -0.1703 S13: -0.0205 REMARK 3 S21: 0.1066 S22: 0.0118 S23: 0.0322 REMARK 3 S31: -0.4243 S32: 0.1140 S33: 0.0114 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 349 REMARK 3 ORIGIN FOR THE GROUP (A): -18.3360 8.8990 24.2460 REMARK 3 T TENSOR REMARK 3 T11: 1.8785 T22: 0.1208 REMARK 3 T33: 0.7051 T12: -0.2766 REMARK 3 T13: 0.3355 T23: -0.1337 REMARK 3 L TENSOR REMARK 3 L11: 2.4705 L22: 0.4475 REMARK 3 L33: 0.8569 L12: 0.3226 REMARK 3 L13: 0.4612 L23: -0.4977 REMARK 3 S TENSOR REMARK 3 S11: 0.2412 S12: -0.0636 S13: 0.8496 REMARK 3 S21: 0.8818 S22: -0.1680 S23: 0.2911 REMARK 3 S31: -1.1377 S32: 0.1887 S33: -0.0732 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 350 A 622 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1530 -10.6190 11.7850 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.3235 REMARK 3 T33: 0.5108 T12: -0.1147 REMARK 3 T13: 0.0719 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 1.8936 L22: 1.0910 REMARK 3 L33: 3.7701 L12: -0.2587 REMARK 3 L13: -0.1329 L23: -0.0358 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.1287 S13: 0.1768 REMARK 3 S21: -0.2011 S22: 0.0279 S23: -0.1782 REMARK 3 S31: -0.5426 S32: 0.4969 S33: -0.0018 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 49 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3510 -11.5120 47.6850 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 1.0378 REMARK 3 T33: 0.6371 T12: -0.2135 REMARK 3 T13: -0.2541 T23: -0.0760 REMARK 3 L TENSOR REMARK 3 L11: 0.9728 L22: 2.7706 REMARK 3 L33: 4.1974 L12: 0.3149 REMARK 3 L13: -1.0727 L23: 2.1885 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: -0.7265 S13: 0.0496 REMARK 3 S21: 0.1110 S22: 0.1371 S23: -0.6818 REMARK 3 S31: -0.2735 S32: 1.2246 S33: -0.2001 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7160 -12.2810 40.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.7625 REMARK 3 T33: 0.5304 T12: -0.3180 REMARK 3 T13: -0.1324 T23: 0.1071 REMARK 3 L TENSOR REMARK 3 L11: 4.3049 L22: 2.2086 REMARK 3 L33: 3.0291 L12: 1.3445 REMARK 3 L13: 0.3708 L23: 2.3370 REMARK 3 S TENSOR REMARK 3 S11: -0.0703 S12: 0.0117 S13: 0.0824 REMARK 3 S21: -0.3600 S22: 0.1734 S23: -0.1803 REMARK 3 S31: -0.6317 S32: 0.6133 S33: -0.1030 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0770 -10.8470 50.1320 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.5802 REMARK 3 T33: 0.4216 T12: -0.1267 REMARK 3 T13: -0.0909 T23: -0.1731 REMARK 3 L TENSOR REMARK 3 L11: 3.5311 L22: 4.4380 REMARK 3 L33: 8.5293 L12: 1.1187 REMARK 3 L13: -1.3782 L23: 0.0940 REMARK 3 S TENSOR REMARK 3 S11: 0.1675 S12: -1.3041 S13: 0.7942 REMARK 3 S21: -0.0565 S22: -0.2625 S23: 0.3422 REMARK 3 S31: -0.9673 S32: 0.3931 S33: 0.0951 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 107 B 165 REMARK 3 ORIGIN FOR THE GROUP (A): -26.8020 -22.2620 33.0110 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.2971 REMARK 3 T33: 0.5254 T12: -0.0007 REMARK 3 T13: -0.0076 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 1.6477 L22: 0.3112 REMARK 3 L33: 4.6877 L12: -0.3214 REMARK 3 L13: -1.6765 L23: -0.4706 REMARK 3 S TENSOR REMARK 3 S11: 0.1076 S12: -0.0108 S13: -0.0224 REMARK 3 S21: -0.1039 S22: 0.0505 S23: 0.1078 REMARK 3 S31: 0.1648 S32: -0.4912 S33: -0.1581 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 166 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): -30.3220 -25.1220 45.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.2714 T22: 0.1819 REMARK 3 T33: 0.5672 T12: -0.0264 REMARK 3 T13: 0.0895 T23: -0.0769 REMARK 3 L TENSOR REMARK 3 L11: 2.9183 L22: 0.3220 REMARK 3 L33: 5.5690 L12: -0.2952 REMARK 3 L13: -1.2731 L23: -1.0498 REMARK 3 S TENSOR REMARK 3 S11: -0.1764 S12: 0.1259 S13: 0.0185 REMARK 3 S21: -0.0207 S22: 0.0732 S23: 0.0573 REMARK 3 S31: 0.3597 S32: -0.5112 S33: 0.1033 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 65 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1810 -29.4220 58.3240 REMARK 3 T TENSOR REMARK 3 T11: 0.2926 T22: 0.1709 REMARK 3 T33: 0.4523 T12: 0.0760 REMARK 3 T13: 0.0175 T23: 0.0895 REMARK 3 L TENSOR REMARK 3 L11: 1.7894 L22: 1.3386 REMARK 3 L33: 4.9856 L12: 1.1251 REMARK 3 L13: -1.6394 L23: -0.8642 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.3397 S13: -0.1121 REMARK 3 S21: 0.1528 S22: -0.2112 S23: 0.0794 REMARK 3 S31: -0.0105 S32: 0.7986 S33: 0.1713 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 66 C 89 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5380 -27.3890 94.3010 REMARK 3 T TENSOR REMARK 3 T11: 0.7235 T22: 0.4099 REMARK 3 T33: 0.3477 T12: 0.0800 REMARK 3 T13: -0.0393 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.6770 L22: 9.8056 REMARK 3 L33: 8.9614 L12: 2.5096 REMARK 3 L13: -1.8693 L23: -1.3813 REMARK 3 S TENSOR REMARK 3 S11: 0.2198 S12: -0.3761 S13: 0.3675 REMARK 3 S21: 1.6528 S22: 0.1465 S23: 0.3943 REMARK 3 S31: -0.5261 S32: 0.3326 S33: -0.3663 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 90 C 143 REMARK 3 ORIGIN FOR THE GROUP (A): -34.2380 -14.5500 68.4880 REMARK 3 T TENSOR REMARK 3 T11: 0.6744 T22: 0.0755 REMARK 3 T33: 0.4060 T12: -0.0184 REMARK 3 T13: 0.1335 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 1.1881 L22: 3.2341 REMARK 3 L33: 7.9116 L12: -0.2362 REMARK 3 L13: -2.2400 L23: 0.8311 REMARK 3 S TENSOR REMARK 3 S11: 0.4664 S12: -0.0061 S13: 0.1134 REMARK 3 S21: 0.6545 S22: -0.0942 S23: 0.0017 REMARK 3 S31: -0.7813 S32: -0.2949 S33: -0.3722 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 35 D 80 REMARK 3 ORIGIN FOR THE GROUP (A): -44.2320 -29.7950 67.2780 REMARK 3 T TENSOR REMARK 3 T11: 0.4915 T22: 0.3851 REMARK 3 T33: 0.7294 T12: 0.0437 REMARK 3 T13: 0.3017 T23: -0.0702 REMARK 3 L TENSOR REMARK 3 L11: 2.9703 L22: 3.9776 REMARK 3 L33: 7.6762 L12: 2.4768 REMARK 3 L13: -2.3406 L23: 1.1536 REMARK 3 S TENSOR REMARK 3 S11: -0.1519 S12: 0.1436 S13: -0.3233 REMARK 3 S21: -0.0550 S22: -0.4838 S23: 0.3172 REMARK 3 S31: -0.2838 S32: -1.1501 S33: 0.6357 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 81 D 96 REMARK 3 ORIGIN FOR THE GROUP (A): -26.3730 -36.2440 61.1160 REMARK 3 T TENSOR REMARK 3 T11: 0.9249 T22: 0.1350 REMARK 3 T33: 1.1061 T12: 0.0215 REMARK 3 T13: 0.3434 T23: 0.2558 REMARK 3 L TENSOR REMARK 3 L11: 8.0062 L22: 0.2138 REMARK 3 L33: 12.3740 L12: -0.4161 REMARK 3 L13: 9.8327 L23: -0.7177 REMARK 3 S TENSOR REMARK 3 S11: 0.3195 S12: -0.0034 S13: -0.5394 REMARK 3 S21: -0.2101 S22: -0.0147 S23: -0.1161 REMARK 3 S31: 0.4947 S32: 0.0993 S33: -0.3048 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 97 D 122 REMARK 3 ORIGIN FOR THE GROUP (A): -35.9330 -41.9250 73.8030 REMARK 3 T TENSOR REMARK 3 T11: 0.8255 T22: 0.3256 REMARK 3 T33: 0.5523 T12: -0.2679 REMARK 3 T13: 0.2597 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 8.2609 L22: 4.3155 REMARK 3 L33: 0.1459 L12: -1.5816 REMARK 3 L13: -0.6559 L23: -0.4517 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: 1.1538 S13: -0.5367 REMARK 3 S21: -0.1148 S22: -0.1500 S23: -0.1335 REMARK 3 S31: 0.1012 S32: -0.1156 S33: 0.1404 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 123 D 136 REMARK 3 ORIGIN FOR THE GROUP (A): -42.5960 -27.0720 88.1940 REMARK 3 T TENSOR REMARK 3 T11: 0.8086 T22: 0.5063 REMARK 3 T33: 0.6081 T12: 0.0717 REMARK 3 T13: 0.1619 T23: -0.0834 REMARK 3 L TENSOR REMARK 3 L11: 1.7765 L22: 0.2365 REMARK 3 L33: 3.6985 L12: 0.5542 REMARK 3 L13: -2.5487 L23: -0.7616 REMARK 3 S TENSOR REMARK 3 S11: -0.1277 S12: -0.0339 S13: -0.1595 REMARK 3 S21: 0.0626 S22: -0.1718 S23: 0.0588 REMARK 3 S31: 0.0867 S32: -0.0667 S33: 0.2995 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3AEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000029148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.80000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27959 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6570 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM HEPES-NAOH, 5% PEG 4000, 200MM REMARK 280 SUCROSE, 100MM NACL, 10MM CACL2, 0.5MM EDTA, 3% 1,6-HAXANEDIOL, REMARK 280 0.5% N-DECYL-BETA-D-MALTOSIDE, PH 7.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.37550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.86750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.92050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 146.86750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.37550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.92050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THESE COMPLEX FORMS MITOCHONDRIAL RESPIRATORY COMPLEX II. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 ALA B 8 REMARK 465 LYS B 248 REMARK 465 LYS B 249 REMARK 465 ALA B 250 REMARK 465 SER B 251 REMARK 465 ALA B 252 REMARK 465 LEU C 4 REMARK 465 GLY C 5 REMARK 465 ALA D 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 62 -61.48 -120.46 REMARK 500 MET A 72 -76.03 -94.13 REMARK 500 ALA A 151 -128.79 41.53 REMARK 500 ARG A 153 64.92 -117.88 REMARK 500 ASP A 170 44.96 -83.22 REMARK 500 LEU A 180 -62.05 -97.05 REMARK 500 ALA A 213 56.68 -140.04 REMARK 500 TYR A 217 46.31 -144.05 REMARK 500 ARG A 219 11.20 -64.77 REMARK 500 MET A 237 -37.32 -37.15 REMARK 500 ARG A 283 85.98 -69.13 REMARK 500 MET A 285 26.36 -78.69 REMARK 500 LYS A 293 -153.64 59.15 REMARK 500 LEU A 295 45.10 -105.61 REMARK 500 HIS A 365 -43.87 -144.37 REMARK 500 ASN A 408 114.03 -165.16 REMARK 500 ASN A 461 67.17 -113.60 REMARK 500 ALA A 481 54.10 -118.07 REMARK 500 ALA A 482 -153.37 -77.67 REMARK 500 ASP A 503 -19.83 -45.39 REMARK 500 TRP A 516 56.52 33.75 REMARK 500 LYS A 544 54.96 -104.11 REMARK 500 GLN A 569 -78.34 -81.86 REMARK 500 GLN A 571 129.33 -175.73 REMARK 500 GLU A 598 -169.97 -116.79 REMARK 500 THR A 606 -157.14 -92.86 REMARK 500 ASN A 608 95.04 -166.38 REMARK 500 TRP B 19 116.21 -162.13 REMARK 500 ILE B 55 -72.11 -105.94 REMARK 500 SER B 64 -84.75 -157.37 REMARK 500 ASP B 110 -124.11 48.03 REMARK 500 GLU B 126 72.88 51.54 REMARK 500 GLU B 134 5.51 -65.74 REMARK 500 CYS B 164 -85.17 -33.23 REMARK 500 THR B 217 59.13 39.25 REMARK 500 HIS C 29 -88.27 -116.09 REMARK 500 LYS C 78 64.48 -68.44 REMARK 500 SER C 79 -65.98 -91.39 REMARK 500 CYS C 81 -165.77 57.77 REMARK 500 PRO C 84 -66.04 -10.69 REMARK 500 THR C 85 48.76 -79.26 REMARK 500 LEU C 86 -41.61 -158.43 REMARK 500 LEU C 117 47.43 -106.10 REMARK 500 LYS D 37 51.50 -92.73 REMARK 500 ASN D 63 76.24 -153.32 REMARK 500 VAL D 92 86.30 -69.40 REMARK 500 ASP D 123 -160.00 -125.81 REMARK 500 LYS D 135 76.41 -69.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 FES B 302 S1 124.8 REMARK 620 3 FES B 302 S2 111.6 91.0 REMARK 620 4 CYS B 70 SG 104.8 104.4 121.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 73 SG REMARK 620 2 FES B 302 S1 117.5 REMARK 620 3 FES B 302 S2 129.1 91.2 REMARK 620 4 CYS B 85 SG 104.0 118.1 96.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 158 SG REMARK 620 2 SF4 B 303 S2 106.7 REMARK 620 3 SF4 B 303 S3 132.6 104.3 REMARK 620 4 SF4 B 303 S4 100.5 107.2 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 168 SG REMARK 620 2 F3S B 304 S2 84.7 REMARK 620 3 F3S B 304 S3 93.3 97.5 REMARK 620 4 F3S B 304 S4 97.0 161.3 101.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 215 SG REMARK 620 2 F3S B 304 S1 102.4 REMARK 620 3 F3S B 304 S2 106.0 121.6 REMARK 620 4 F3S B 304 S3 134.8 97.8 96.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 221 SG REMARK 620 2 F3S B 304 S1 108.6 REMARK 620 3 F3S B 304 S3 113.2 97.5 REMARK 620 4 F3S B 304 S4 105.2 131.9 99.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 225 SG REMARK 620 2 SF4 B 303 S1 96.1 REMARK 620 3 SF4 B 303 S3 109.5 103.6 REMARK 620 4 SF4 B 303 S4 134.0 106.2 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C1305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 101 NE2 REMARK 620 2 HEM C1305 NA 90.4 REMARK 620 3 HEM C1305 NB 97.6 88.5 REMARK 620 4 HEM C1305 NC 83.7 173.8 90.9 REMARK 620 5 HEM C1305 ND 80.7 90.1 177.8 90.3 REMARK 620 6 HIS D 79 NE2 173.6 96.0 83.2 90.0 98.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AT5 C 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ABV RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEA RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEB RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AED RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEF RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH AN EMPTY QUINONE-BINDING POCKET REMARK 900 RELATED ID: 3AEG RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF CHAIN D IS REFERRED IN REF 2 IN A5GZW8, UNIPROT. DBREF 3AEE A 1 622 UNP Q0QF01 DHSA_PIG 43 664 DBREF 3AEE B 1 252 UNP Q007T0 DHSB_PIG 29 280 DBREF 3AEE C 4 143 UNP D0VWV4 C560_PIG 30 169 DBREF 3AEE D 34 136 UNP A5GZW8 DHSD_PIG 57 159 SEQRES 1 A 622 SER SER ALA LYS VAL SER ASP ALA ILE SER THR GLN TYR SEQRES 2 A 622 PRO VAL VAL ASP HIS GLU PHE ASP ALA VAL VAL VAL GLY SEQRES 3 A 622 ALA GLY GLY ALA GLY LEU ARG ALA ALA PHE GLY LEU SER SEQRES 4 A 622 GLU ALA GLY PHE ASN THR ALA CYS VAL THR LYS LEU PHE SEQRES 5 A 622 PRO THR ARG SER HIS THR VAL ALA ALA GLN GLY GLY ILE SEQRES 6 A 622 ASN ALA ALA LEU GLY ASN MET GLU GLU ASP ASN TRP ARG SEQRES 7 A 622 TRP HIS PHE TYR ASP THR VAL LYS GLY SER ASP TRP LEU SEQRES 8 A 622 GLY ASP GLN ASP ALA ILE HIS TYR MET THR GLU GLN ALA SEQRES 9 A 622 PRO ALA SER VAL VAL GLU LEU GLU ASN TYR GLY MET PRO SEQRES 10 A 622 PHE SER ARG THR GLU ASP GLY LYS ILE TYR GLN ARG ALA SEQRES 11 A 622 PHE GLY GLY GLN SER LEU LYS PHE GLY LYS GLY GLY GLN SEQRES 12 A 622 ALA HIS ARG CYS CYS CYS VAL ALA ASP ARG THR GLY HIS SEQRES 13 A 622 SER LEU LEU HIS THR LEU TYR GLY ARG SER LEU ARG TYR SEQRES 14 A 622 ASP THR SER TYR PHE VAL GLU TYR PHE ALA LEU ASP LEU SEQRES 15 A 622 LEU MET GLU ASN GLY GLU CYS ARG GLY VAL ILE ALA LEU SEQRES 16 A 622 CYS ILE GLU ASP GLY SER ILE HIS ARG ILE ARG ALA ARG SEQRES 17 A 622 ASN THR VAL VAL ALA THR GLY GLY TYR GLY ARG THR TYR SEQRES 18 A 622 PHE SER CYS THR SER ALA HIS THR SER THR GLY ASP GLY SEQRES 19 A 622 THR ALA MET VAL THR ARG ALA GLY LEU PRO CYS GLN ASP SEQRES 20 A 622 LEU GLU PHE VAL GLN PHE HIS PRO THR GLY ILE TYR GLY SEQRES 21 A 622 ALA GLY CYS LEU ILE THR GLU GLY CYS ARG GLY GLU GLY SEQRES 22 A 622 GLY ILE LEU ILE ASN SER GLN GLY GLU ARG PHE MET GLU SEQRES 23 A 622 ARG TYR ALA PRO VAL ALA LYS ASP LEU ALA SER ARG ASP SEQRES 24 A 622 VAL VAL SER ARG SER MET THR LEU GLU ILE ARG GLU GLY SEQRES 25 A 622 ARG GLY CYS GLY PRO GLU LYS ASP HIS VAL TYR LEU GLN SEQRES 26 A 622 LEU HIS HIS LEU PRO PRO GLU GLN LEU ALA VAL ARG LEU SEQRES 27 A 622 PRO GLY ILE SER GLU THR ALA MET ILE PHE ALA GLY VAL SEQRES 28 A 622 ASP VAL THR LYS GLU PRO ILE PRO VAL LEU PRO THR VAL SEQRES 29 A 622 HIS TYR ASN MET GLY GLY ILE PRO THR ASN TYR LYS GLY SEQRES 30 A 622 GLN VAL LEU ARG HIS VAL ASN GLY GLN ASP GLN VAL VAL SEQRES 31 A 622 PRO GLY LEU TYR ALA CYS GLY GLU ALA ALA CYS ALA SER SEQRES 32 A 622 VAL HIS GLY ALA ASN ARG LEU GLY ALA ASN SER LEU LEU SEQRES 33 A 622 ASP LEU VAL VAL PHE GLY ARG ALA CYS ALA LEU SER ILE SEQRES 34 A 622 ALA GLU SER CYS ARG PRO GLY ASP LYS VAL PRO SER ILE SEQRES 35 A 622 LYS PRO ASN ALA GLY GLU GLU SER VAL MET ASN LEU ASP SEQRES 36 A 622 LYS LEU ARG PHE ALA ASN GLY THR ILE ARG THR SER GLU SEQRES 37 A 622 LEU ARG LEU SER MET GLN LYS SER MET GLN SER HIS ALA SEQRES 38 A 622 ALA VAL PHE ARG VAL GLY SER VAL LEU GLN GLU GLY CYS SEQRES 39 A 622 GLU LYS ILE LEU ARG LEU TYR GLY ASP LEU GLN HIS LEU SEQRES 40 A 622 LYS THR PHE ASP ARG GLY MET VAL TRP ASN THR ASP LEU SEQRES 41 A 622 VAL GLU THR LEU GLU LEU GLN ASN LEU MET LEU CYS ALA SEQRES 42 A 622 LEU GLN THR ILE TYR GLY ALA GLU ALA ARG LYS GLU SER SEQRES 43 A 622 ARG GLY ALA HIS ALA ARG GLU ASP PHE LYS GLU ARG VAL SEQRES 44 A 622 ASP GLU TYR ASP TYR SER LYS PRO ILE GLN GLY GLN GLN SEQRES 45 A 622 LYS LYS PRO PHE GLN GLU HIS TRP ARG LYS HIS THR LEU SEQRES 46 A 622 SER TYR VAL ASP VAL LYS THR GLY LYS VAL SER LEU GLU SEQRES 47 A 622 TYR ARG PRO VAL ILE ASP LYS THR LEU ASN GLU ALA ASP SEQRES 48 A 622 CYS ALA THR VAL PRO PRO ALA ILE ARG SER TYR SEQRES 1 B 252 ALA GLN THR ALA ALA ALA THR ALA PRO ARG ILE LYS LYS SEQRES 2 B 252 PHE ALA ILE TYR ARG TRP ASP PRO ASP LYS THR GLY ASP SEQRES 3 B 252 LYS PRO HIS MET GLN THR TYR GLU ILE ASP LEU ASN ASN SEQRES 4 B 252 CYS GLY PRO MET VAL LEU ASP ALA LEU ILE LYS ILE LYS SEQRES 5 B 252 ASN GLU ILE ASP SER THR LEU THR PHE ARG ARG SER CYS SEQRES 6 B 252 ARG GLU GLY ILE CYS GLY SER CYS ALA MET ASN ILE ASN SEQRES 7 B 252 GLY GLY ASN THR LEU ALA CYS THR ARG ARG ILE ASP THR SEQRES 8 B 252 ASN LEU ASP LYS VAL SER LYS ILE TYR PRO LEU PRO HIS SEQRES 9 B 252 MET TYR VAL ILE LYS ASP LEU VAL PRO ASP LEU SER ASN SEQRES 10 B 252 PHE TYR ALA GLN TYR LYS SER ILE GLU PRO TYR LEU LYS SEQRES 11 B 252 LYS LYS ASP GLU SER GLN GLU GLY LYS GLN GLN TYR LEU SEQRES 12 B 252 GLN SER ILE GLU GLU ARG GLU LYS LEU ASP GLY LEU TYR SEQRES 13 B 252 GLU CYS ILE LEU CYS ALA CYS CYS SER THR SER CYS PRO SEQRES 14 B 252 SER TYR TRP TRP ASN GLY ASP LYS TYR LEU GLY PRO ALA SEQRES 15 B 252 VAL LEU MET GLN ALA TYR ARG TRP MET ILE ASP SER ARG SEQRES 16 B 252 ASP ASP PHE THR GLU GLU ARG LEU ALA LYS LEU GLN ASP SEQRES 17 B 252 PRO PHE SER LEU TYR ARG CYS HIS THR ILE MET ASN CYS SEQRES 18 B 252 THR GLY THR CYS PRO LYS GLY LEU ASN PRO GLY LYS ALA SEQRES 19 B 252 ILE ALA GLU ILE LYS LYS MET MET ALA THR TYR LYS GLU SEQRES 20 B 252 LYS LYS ALA SER ALA SEQRES 1 C 140 LEU GLY THR THR ALA LYS GLU GLU MET GLU ARG PHE TRP SEQRES 2 C 140 ASN LYS ASN LEU GLY SER ASN ARG PRO LEU SER PRO HIS SEQRES 3 C 140 ILE THR ILE TYR ARG TRP SER LEU PRO MET ALA MET SER SEQRES 4 C 140 ILE CYS HIS ARG GLY THR GLY ILE ALA LEU SER ALA GLY SEQRES 5 C 140 VAL SER LEU PHE GLY LEU SER ALA LEU LEU LEU PRO GLY SEQRES 6 C 140 ASN PHE GLU SER HIS LEU GLU LEU VAL LYS SER LEU CYS SEQRES 7 C 140 LEU GLY PRO THR LEU ILE TYR THR ALA LYS PHE GLY ILE SEQRES 8 C 140 VAL PHE PRO LEU MET TYR HIS THR TRP ASN GLY ILE ARG SEQRES 9 C 140 HIS LEU ILE TRP ASP LEU GLY LYS GLY LEU THR ILE PRO SEQRES 10 C 140 GLN LEU THR GLN SER GLY VAL VAL VAL LEU ILE LEU THR SEQRES 11 C 140 VAL LEU SER SER VAL GLY LEU ALA ALA MET SEQRES 1 D 103 ALA SER SER LYS ALA ALA SER LEU HIS TRP THR GLY GLU SEQRES 2 D 103 ARG VAL VAL SER VAL LEU LEU LEU GLY LEU LEU PRO ALA SEQRES 3 D 103 ALA TYR LEU ASN PRO CYS SER ALA MET ASP TYR SER LEU SEQRES 4 D 103 ALA ALA ALA LEU THR LEU HIS GLY HIS TRP GLY ILE GLY SEQRES 5 D 103 GLN VAL VAL THR ASP TYR VAL ARG GLY ASP ALA LEU GLN SEQRES 6 D 103 LYS ALA ALA LYS ALA GLY LEU LEU ALA LEU SER ALA PHE SEQRES 7 D 103 THR PHE ALA GLY LEU CYS TYR PHE ASN TYR HIS ASP VAL SEQRES 8 D 103 GLY ILE CYS LYS ALA VAL ALA MET LEU TRP LYS LEU HET FAD A 700 53 HET FES B 302 4 HET F3S B 304 7 HET SF4 B 303 8 HET HEM C1305 43 HET AT5 C1201 23 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM AT5 3-[(2S,4S,5R)-5,6-DICHLORO-2,4-DIMETHYL-1-OXOHEXYL]-4- HETNAM 2 AT5 HYDROXY-5,6-DIMETHOXY-2(1H)-PYRIDINONE HETSYN HEM HEME HETSYN AT5 ATPENIN A5; AA5 FORMUL 5 FAD C27 H33 N9 O15 P2 FORMUL 6 FES FE2 S2 FORMUL 7 F3S FE3 S4 FORMUL 8 SF4 FE4 S4 FORMUL 9 HEM C34 H32 FE N4 O4 FORMUL 10 AT5 C15 H21 CL2 N O5 HELIX 1 1 GLY A 28 ALA A 41 1 14 HELIX 2 2 PHE A 52 ALA A 61 5 10 HELIX 3 3 ASN A 76 SER A 88 1 13 HELIX 4 4 ASP A 93 GLY A 115 1 23 HELIX 5 5 ARG A 153 LEU A 167 1 15 HELIX 6 6 TYR A 217 TYR A 221 5 5 HELIX 7 7 GLY A 232 ARG A 240 1 9 HELIX 8 8 THR A 266 ARG A 270 5 5 HELIX 9 9 ARG A 283 ARG A 287 5 5 HELIX 10 10 ASP A 299 GLU A 311 1 13 HELIX 11 11 PRO A 330 LEU A 338 1 9 HELIX 12 12 LEU A 338 ALA A 349 1 12 HELIX 13 13 ASP A 352 LYS A 355 5 4 HELIX 14 14 ASN A 413 GLU A 431 1 19 HELIX 15 15 GLY A 447 PHE A 459 1 13 HELIX 16 16 THR A 466 ALA A 481 1 16 HELIX 17 17 VAL A 486 ASP A 503 1 18 HELIX 18 18 ASN A 517 ARG A 543 1 27 HELIX 19 19 PRO A 575 HIS A 579 5 5 HELIX 20 20 MET B 43 ILE B 55 1 13 HELIX 21 21 LEU B 115 SER B 124 1 10 HELIX 22 22 ASP B 133 GLU B 137 5 5 HELIX 23 23 SER B 145 LYS B 151 1 7 HELIX 24 24 CYS B 168 GLY B 175 1 8 HELIX 25 25 GLY B 180 ILE B 192 1 13 HELIX 26 26 GLU B 200 LYS B 205 1 6 HELIX 27 27 MET B 219 CYS B 225 1 7 HELIX 28 28 ASN B 230 TYR B 245 1 16 HELIX 29 29 THR C 7 LEU C 20 1 14 HELIX 30 30 SER C 36 LEU C 61 1 26 HELIX 31 31 LEU C 61 LEU C 66 1 6 HELIX 32 32 PHE C 70 LYS C 78 1 9 HELIX 33 33 TYR C 88 LEU C 113 1 26 HELIX 34 34 THR C 118 ALA C 142 1 25 HELIX 35 35 LYS D 37 GLY D 55 1 19 HELIX 36 36 GLY D 55 ASN D 63 1 9 HELIX 37 37 CYS D 65 VAL D 92 1 28 HELIX 38 38 ASP D 95 ASP D 123 1 29 HELIX 39 39 GLY D 125 LYS D 135 1 11 SHEET 1 A 6 SER A 172 VAL A 175 0 SHEET 2 A 6 THR A 45 THR A 49 1 N CYS A 47 O SER A 172 SHEET 3 A 6 HIS A 18 VAL A 25 1 N VAL A 24 O ALA A 46 SHEET 4 A 6 ILE A 202 VAL A 212 1 O VAL A 211 N VAL A 25 SHEET 5 A 6 GLU A 188 CYS A 196 -1 N ALA A 194 O HIS A 203 SHEET 6 A 6 TYR A 177 GLU A 185 -1 N LEU A 183 O ARG A 190 SHEET 1 B 6 SER A 172 VAL A 175 0 SHEET 2 B 6 THR A 45 THR A 49 1 N CYS A 47 O SER A 172 SHEET 3 B 6 HIS A 18 VAL A 25 1 N VAL A 24 O ALA A 46 SHEET 4 B 6 ILE A 202 VAL A 212 1 O VAL A 211 N VAL A 25 SHEET 5 B 6 GLN A 386 ALA A 395 1 O TYR A 394 N VAL A 212 SHEET 6 B 6 GLN A 378 VAL A 383 -1 N VAL A 379 O VAL A 390 SHEET 1 C 3 ILE A 65 ASN A 66 0 SHEET 2 C 3 GLN A 143 CYS A 148 -1 O CYS A 148 N ILE A 65 SHEET 3 C 3 GLN A 128 SER A 135 -1 N ARG A 129 O CYS A 147 SHEET 1 D 3 CYS A 245 GLN A 246 0 SHEET 2 D 3 LYS A 582 SER A 586 -1 O SER A 586 N CYS A 245 SHEET 3 D 3 LEU A 597 PRO A 601 -1 O ARG A 600 N HIS A 583 SHEET 1 E 2 VAL A 251 HIS A 254 0 SHEET 2 E 2 THR A 363 ASN A 367 -1 O HIS A 365 N GLN A 252 SHEET 1 F 3 ILE A 275 ILE A 277 0 SHEET 2 F 3 VAL A 322 GLN A 325 -1 O GLN A 325 N ILE A 275 SHEET 3 F 3 PRO A 357 VAL A 360 -1 O ILE A 358 N LEU A 324 SHEET 1 G 2 ILE A 371 PRO A 372 0 SHEET 2 G 2 ALA A 400 CYS A 401 1 O CYS A 401 N ILE A 371 SHEET 1 H 2 ILE A 464 ARG A 465 0 SHEET 2 H 2 LEU A 507 LYS A 508 1 O LYS A 508 N ILE A 464 SHEET 1 I 2 PHE A 484 ARG A 485 0 SHEET 2 I 2 ALA A 551 ARG A 552 1 O ALA A 551 N ARG A 485 SHEET 1 J 5 HIS B 29 ASP B 36 0 SHEET 2 J 5 ILE B 11 ARG B 18 -1 N ILE B 16 O GLN B 31 SHEET 3 J 5 SER B 97 TYR B 100 1 O ILE B 99 N ALA B 15 SHEET 4 J 5 ALA B 74 ILE B 77 -1 N ASN B 76 O TYR B 100 SHEET 5 J 5 ASN B 81 LEU B 83 -1 O THR B 82 N MET B 75 SHEET 1 K 2 VAL B 107 LYS B 109 0 SHEET 2 K 2 VAL B 112 PRO B 113 -1 O VAL B 112 N ILE B 108 LINK NE2 HIS A 57 C8M FAD A 700 1555 1555 1.96 LINK SG CYS B 65 FE2 FES B 302 1555 1555 2.35 LINK SG CYS B 70 FE2 FES B 302 1555 1555 1.95 LINK SG CYS B 73 FE1 FES B 302 1555 1555 1.97 LINK SG CYS B 85 FE1 FES B 302 1555 1555 2.46 LINK SG CYS B 158 FE1 SF4 B 303 1555 1555 2.38 LINK SG CYS B 168 FE4 F3S B 304 1555 1555 2.40 LINK SG CYS B 215 FE1 F3S B 304 1555 1555 2.44 LINK SG CYS B 221 FE3 F3S B 304 1555 1555 2.41 LINK SG CYS B 225 FE2 SF4 B 303 1555 1555 2.66 LINK NE2 HIS C 101 FE HEM C1305 1555 1555 2.14 LINK FE HEM C1305 NE2 HIS D 79 1555 1555 2.19 SITE 1 AC1 33 GLY A 26 ALA A 27 GLY A 28 GLY A 29 SITE 2 AC1 33 ALA A 30 THR A 49 LYS A 50 LEU A 51 SITE 3 AC1 33 SER A 56 HIS A 57 THR A 58 ALA A 61 SITE 4 AC1 33 GLN A 62 GLY A 63 GLY A 64 TYR A 177 SITE 5 AC1 33 PHE A 178 ALA A 179 THR A 214 GLY A 215 SITE 6 AC1 33 THR A 225 SER A 226 ASP A 233 LEU A 264 SITE 7 AC1 33 HIS A 365 TYR A 366 GLU A 398 ARG A 409 SITE 8 AC1 33 ALA A 412 ASN A 413 SER A 414 LEU A 415 SITE 9 AC1 33 LEU A 418 SITE 1 AC2 8 SER B 64 CYS B 65 ARG B 66 GLY B 68 SITE 2 AC2 8 CYS B 70 GLY B 71 CYS B 73 CYS B 85 SITE 1 AC3 9 CYS B 168 TYR B 178 PRO B 181 CYS B 215 SITE 2 AC3 9 HIS B 216 THR B 217 MET B 219 ASN B 220 SITE 3 AC3 9 CYS B 221 SITE 1 AC4 8 CYS B 158 ILE B 159 LEU B 160 CYS B 161 SITE 2 AC4 8 ALA B 162 CYS B 164 CYS B 225 PRO B 226 SITE 1 AC5 13 HIS C 45 ARG C 46 GLY C 49 LEU C 52 SITE 2 AC5 13 SER C 53 HIS C 101 HIS C 108 SER D 50 SITE 3 AC5 13 LEU D 53 LEU D 54 HIS D 79 GLY D 83 SITE 4 AC5 13 VAL D 87 SITE 1 AC6 11 SER B 170 TRP B 172 TRP B 173 HIS B 216 SITE 2 AC6 11 ILE B 218 ILE C 30 MET C 39 SER C 42 SITE 3 AC6 11 ILE C 43 ARG C 46 TYR D 91 CRYST1 70.751 83.841 293.735 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011927 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003404 0.00000