HEADER OXIDOREDUCTASE 04-FEB-10 3AEF TITLE CRYSTAL STRUCTURE OF PORCINE HEART MITOCHONDRIAL COMPLEX II WITH AN TITLE 2 EMPTY QUINONE-BINDING POCKET COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: FLAVOPROTEIN SUBUNIT OF COMPLEX II, FP; COMPND 6 EC: 1.3.5.1; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, COMPND 9 MITOCHONDRIAL; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: IRON-SULFUR SUBUNIT OF COMPLEX II, IP; COMPND 12 EC: 1.3.5.1; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, COMPND 15 MITOCHONDRIAL; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B LARGE COMPND 18 SUBUNIT, CYBL; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL COMPND 21 SUBUNIT, MITOCHONDRIAL; COMPND 22 CHAIN: D; COMPND 23 FRAGMENT: RESIDUES 57-159; COMPND 24 SYNONYM: SUCCINATE-UBIQUINONE OXIDOREDUCTASE CYTOCHROME B SMALL COMPND 25 SUBUNIT, CYBS, SUCCINATE-UBIQUINONE REDUCTASE MEMBRANE ANCHOR COMPND 26 SUBUNIT, QPS3, CII-4, SUCCINATE DEHYDROGENASE COMPLEX SUBUNIT D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: HEART; SOURCE 6 TISSUE: MUSCLE; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 9 ORGANISM_COMMON: PIG; SOURCE 10 ORGANISM_TAXID: 9823; SOURCE 11 ORGAN: HEART; SOURCE 12 TISSUE: MUSCLE; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 15 ORGANISM_COMMON: PIG; SOURCE 16 ORGANISM_TAXID: 9823; SOURCE 17 ORGAN: HEART; SOURCE 18 TISSUE: MUSCLE; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 21 ORGANISM_COMMON: PIG; SOURCE 22 ORGANISM_TAXID: 9823; SOURCE 23 ORGAN: HEART; SOURCE 24 TISSUE: MUSCLE KEYWDS RESPIRATORY COMPLEX II, INHIBITORS, ELECTRON TRANSPORT, IRON, IRON- KEYWDS 2 SULFUR, METAL-BINDING, MITOCHONDRION, MITOCHONDRION INNER MEMBRANE, KEYWDS 3 OXIDOREDUCTASE, TRANSIT PEPTIDE, TRANSPORT, TRICARBOXYLIC ACID KEYWDS 4 CYCLE, HEME, TRANSMEMBRANE, FAD-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HARADA,T.SASAKI,M.SHINDO,Y.KIDO,D.K.INAOKA,J.OMORI,A.OSANAI, AUTHOR 2 K.SAKAMOTO,J.MAO,S.MATSUOKA,M.INOUE,T.HONMA,A.TANAKA,K.KITA REVDAT 3 01-NOV-23 3AEF 1 REMARK LINK REVDAT 2 11-OCT-17 3AEF 1 REMARK REVDAT 1 09-FEB-11 3AEF 0 JRNL AUTH S.HARADA,T.SASAKI,M.SHINDO,Y.KIDO,D.K.INAOKA,J.OMORI, JRNL AUTH 2 A.OSANAI,K.SAKAMOTO,J.MAO,S.MATSUOKA,M.INOUE,T.HONMA, JRNL AUTH 3 A.TANAKA,K.KITA JRNL TITL CRYSTAL STRUCTURE OF PORCINE HEART MITOCHONDRIAL COMPLEX II JRNL TITL 2 WITH AN EMPTY QUINONE-BINDING POCKET JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.9 REMARK 3 NUMBER OF REFLECTIONS : 33773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1691 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2164 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 159 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.406 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.242 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.491 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8843 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11990 ; 1.274 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1088 ; 5.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 375 ;33.617 ;23.413 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1469 ;19.325 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;18.169 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1304 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6632 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5409 ; 0.290 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8672 ; 0.554 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3434 ; 0.870 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3301 ; 1.479 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): -19.6010 -18.4970 17.7020 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.2586 REMARK 3 T33: 0.4260 T12: -0.0396 REMARK 3 T13: 0.0222 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.9517 L22: 0.8394 REMARK 3 L33: 2.1077 L12: -0.0605 REMARK 3 L13: -0.2724 L23: -0.4106 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: -0.0115 S13: -0.0431 REMARK 3 S21: -0.0505 S22: -0.0306 S23: 0.0645 REMARK 3 S31: -0.1412 S32: -0.0056 S33: 0.0090 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3660 -3.8380 19.8240 REMARK 3 T TENSOR REMARK 3 T11: 0.2630 T22: 0.1863 REMARK 3 T33: 0.4165 T12: -0.1244 REMARK 3 T13: 0.0413 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.4028 L22: 2.0214 REMARK 3 L33: 1.9004 L12: -0.6988 REMARK 3 L13: -0.7865 L23: 0.1574 REMARK 3 S TENSOR REMARK 3 S11: 0.1644 S12: -0.0498 S13: 0.3297 REMARK 3 S21: 0.0639 S22: -0.0646 S23: -0.0757 REMARK 3 S31: -0.5662 S32: 0.1868 S33: -0.0998 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 404 A 509 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6630 -15.4940 18.0700 REMARK 3 T TENSOR REMARK 3 T11: 0.1820 T22: 0.3103 REMARK 3 T33: 0.2390 T12: -0.1027 REMARK 3 T13: 0.0880 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.0636 L22: 1.5157 REMARK 3 L33: 1.6774 L12: 0.0348 REMARK 3 L13: -0.1400 L23: -0.2082 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: -0.1113 S13: 0.1099 REMARK 3 S21: -0.1377 S22: -0.0468 S23: -0.2317 REMARK 3 S31: -0.1009 S32: 0.6296 S33: 0.0146 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 510 A 622 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8600 -6.8270 5.7190 REMARK 3 T TENSOR REMARK 3 T11: 0.1843 T22: 0.2717 REMARK 3 T33: 0.3899 T12: -0.1643 REMARK 3 T13: 0.0820 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 1.4859 L22: 0.9146 REMARK 3 L33: 2.3653 L12: -0.4026 REMARK 3 L13: -0.0914 L23: -0.0278 REMARK 3 S TENSOR REMARK 3 S11: 0.1490 S12: 0.1540 S13: 0.3026 REMARK 3 S21: -0.1337 S22: -0.1667 S23: -0.1156 REMARK 3 S31: -0.4564 S32: 0.5224 S33: 0.0177 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4100 -12.3150 45.9750 REMARK 3 T TENSOR REMARK 3 T11: 0.2526 T22: 0.6048 REMARK 3 T33: 0.3452 T12: -0.2028 REMARK 3 T13: 0.0093 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 2.1316 L22: 1.9949 REMARK 3 L33: 1.8082 L12: 0.6316 REMARK 3 L13: 0.1720 L23: 0.0064 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: -0.4259 S13: 0.2373 REMARK 3 S21: 0.2846 S22: -0.1294 S23: -0.1398 REMARK 3 S31: -0.3563 S32: 0.9655 S33: 0.0296 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 107 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1230 -24.3290 39.9280 REMARK 3 T TENSOR REMARK 3 T11: 0.2663 T22: 0.1879 REMARK 3 T33: 0.4380 T12: -0.0426 REMARK 3 T13: 0.0565 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.1184 L22: 0.5772 REMARK 3 L33: 2.6522 L12: -0.1327 REMARK 3 L13: -0.7282 L23: -0.7004 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: 0.0995 S13: -0.0063 REMARK 3 S21: 0.0241 S22: -0.0258 S23: 0.2194 REMARK 3 S31: 0.1082 S32: -0.2429 S33: 0.0060 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 36 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8580 -30.8420 47.3870 REMARK 3 T TENSOR REMARK 3 T11: 0.6725 T22: 0.4150 REMARK 3 T33: 0.2689 T12: 0.1797 REMARK 3 T13: 0.1552 T23: 0.1210 REMARK 3 L TENSOR REMARK 3 L11: 6.5639 L22: 9.7054 REMARK 3 L33: 6.6871 L12: -2.0765 REMARK 3 L13: 1.3792 L23: 2.7542 REMARK 3 S TENSOR REMARK 3 S11: -0.2958 S12: 0.0661 S13: -0.1430 REMARK 3 S21: 1.6030 S22: 0.2957 S23: -0.1964 REMARK 3 S31: 1.8113 S32: 1.8042 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 37 C 65 REMARK 3 ORIGIN FOR THE GROUP (A): -29.8340 -28.9900 72.6130 REMARK 3 T TENSOR REMARK 3 T11: 0.5136 T22: 0.2219 REMARK 3 T33: 0.5849 T12: -0.0415 REMARK 3 T13: 0.0978 T23: 0.0704 REMARK 3 L TENSOR REMARK 3 L11: -0.4501 L22: 5.0511 REMARK 3 L33: 1.2905 L12: -0.9275 REMARK 3 L13: 0.8732 L23: 1.8743 REMARK 3 S TENSOR REMARK 3 S11: -0.2160 S12: -0.0340 S13: -0.1235 REMARK 3 S21: 0.5022 S22: -0.0369 S23: -0.3743 REMARK 3 S31: -0.1603 S32: 0.2908 S33: 0.2529 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 66 C 89 REMARK 3 ORIGIN FOR THE GROUP (A): -33.6660 -28.1940 94.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.6998 T22: 0.5594 REMARK 3 T33: 0.4961 T12: 0.0633 REMARK 3 T13: 0.0421 T23: 0.1055 REMARK 3 L TENSOR REMARK 3 L11: 0.5216 L22: 19.6080 REMARK 3 L33: 11.4665 L12: 8.9439 REMARK 3 L13: 2.8355 L23: 8.8969 REMARK 3 S TENSOR REMARK 3 S11: 0.2990 S12: -0.5532 S13: -0.1876 REMARK 3 S21: 1.0932 S22: -0.0941 S23: -0.3366 REMARK 3 S31: -0.3723 S32: 0.0364 S33: -0.2049 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 90 C 120 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6110 -17.6050 66.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.3905 T22: 0.1632 REMARK 3 T33: 0.5768 T12: 0.0431 REMARK 3 T13: 0.1378 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.8188 L22: 3.1491 REMARK 3 L33: 3.9954 L12: 1.6657 REMARK 3 L13: 0.2228 L23: 2.3792 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: -0.0155 S13: 0.1854 REMARK 3 S21: -0.0534 S22: 0.0060 S23: -0.0641 REMARK 3 S31: 0.2476 S32: -0.3007 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 121 C 143 REMARK 3 ORIGIN FOR THE GROUP (A): -34.1970 -11.0770 71.6030 REMARK 3 T TENSOR REMARK 3 T11: 0.5950 T22: 0.0463 REMARK 3 T33: 0.5711 T12: -0.0499 REMARK 3 T13: 0.1925 T23: -0.0903 REMARK 3 L TENSOR REMARK 3 L11: 3.2044 L22: 2.5316 REMARK 3 L33: 21.3042 L12: -2.9132 REMARK 3 L13: -0.7434 L23: 1.3917 REMARK 3 S TENSOR REMARK 3 S11: -0.2231 S12: -0.2796 S13: -0.0612 REMARK 3 S21: 0.2183 S22: -0.0381 S23: 0.1834 REMARK 3 S31: -0.0100 S32: 0.4466 S33: 0.2612 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 35 D 70 REMARK 3 ORIGIN FOR THE GROUP (A): -45.0370 -29.5100 66.2300 REMARK 3 T TENSOR REMARK 3 T11: 0.5288 T22: 0.3037 REMARK 3 T33: 0.7087 T12: 0.0411 REMARK 3 T13: 0.1536 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.0335 L22: 2.2622 REMARK 3 L33: 2.7023 L12: 0.6565 REMARK 3 L13: 1.3029 L23: -1.5217 REMARK 3 S TENSOR REMARK 3 S11: -0.2270 S12: -0.1239 S13: -0.4883 REMARK 3 S21: -0.0728 S22: -0.0590 S23: 0.4493 REMARK 3 S31: -0.5377 S32: -0.3861 S33: 0.2860 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 71 D 96 REMARK 3 ORIGIN FOR THE GROUP (A): -31.8610 -35.7430 64.2700 REMARK 3 T TENSOR REMARK 3 T11: 0.5369 T22: 0.1181 REMARK 3 T33: 0.4522 T12: -0.0574 REMARK 3 T13: 0.1414 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 12.9836 L22: 1.0507 REMARK 3 L33: 6.2635 L12: 0.3566 REMARK 3 L13: -4.8018 L23: -1.6388 REMARK 3 S TENSOR REMARK 3 S11: -0.6533 S12: 0.0402 S13: -0.7118 REMARK 3 S21: -0.1173 S22: 0.0757 S23: -0.0773 REMARK 3 S31: 0.5971 S32: 0.2939 S33: 0.5776 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 97 D 136 REMARK 3 ORIGIN FOR THE GROUP (A): -38.5770 -37.3810 78.5760 REMARK 3 T TENSOR REMARK 3 T11: 0.4107 T22: 0.0758 REMARK 3 T33: 0.4959 T12: -0.0045 REMARK 3 T13: 0.1399 T23: 0.0919 REMARK 3 L TENSOR REMARK 3 L11: 2.4756 L22: 2.4630 REMARK 3 L33: 7.5773 L12: 1.3609 REMARK 3 L13: -2.4918 L23: -0.7185 REMARK 3 S TENSOR REMARK 3 S11: -0.1700 S12: -0.1994 S13: -0.5837 REMARK 3 S21: 0.3051 S22: -0.1856 S23: 0.0647 REMARK 3 S31: 0.2422 S32: -0.2217 S33: 0.3556 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3AEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000029149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34729 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.4 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.42900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM HEPES-NAOH, 5% PEG 4000, 200MM REMARK 280 SUCROSE, 100MM NACL, 10MM CACL2, 0.5MM EDTA, 3% 1,6-HAXANEDIOL, REMARK 280 0.5% N-DECYL-BETA-D-MALTOSIDE, PH 7.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.61100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.65950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.10450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 146.65950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.61100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.10450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THESE COMPLEX FORMS MITOCHONDRIAL RESPIRATORY COMPLEX II. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 ALA B 8 REMARK 465 LYS B 248 REMARK 465 LYS B 249 REMARK 465 ALA B 250 REMARK 465 SER B 251 REMARK 465 ALA B 252 REMARK 465 LEU C 4 REMARK 465 GLY C 5 REMARK 465 ALA D 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 62 -63.46 -132.82 REMARK 500 ALA A 67 125.01 -174.27 REMARK 500 ALA A 151 -127.03 44.29 REMARK 500 THR A 256 62.52 -111.67 REMARK 500 ARG A 283 90.68 -58.30 REMARK 500 LYS A 293 -140.43 50.79 REMARK 500 ALA A 296 -168.77 -75.55 REMARK 500 HIS A 365 -54.95 -138.06 REMARK 500 SER A 403 71.81 32.79 REMARK 500 ASN A 408 117.84 -167.09 REMARK 500 LYS A 438 101.36 -42.48 REMARK 500 ALA A 481 46.98 -141.06 REMARK 500 LYS A 544 64.04 -100.43 REMARK 500 ASP A 560 -168.48 -100.30 REMARK 500 GLN A 569 -77.42 -55.80 REMARK 500 ASN A 608 110.10 -162.30 REMARK 500 GLU B 54 -35.88 -131.83 REMARK 500 SER B 64 -60.95 -149.95 REMARK 500 ARG B 66 -9.71 78.11 REMARK 500 ASP B 110 130.62 4.26 REMARK 500 LEU B 111 -19.69 63.60 REMARK 500 GLU B 126 70.22 52.86 REMARK 500 ALA B 162 6.22 87.06 REMARK 500 MET B 219 13.93 80.73 REMARK 500 HIS C 29 -83.34 -128.92 REMARK 500 CYS C 81 106.26 73.41 REMARK 500 PRO C 84 -73.11 -54.38 REMARK 500 LEU C 117 37.84 -98.41 REMARK 500 LYS D 37 56.28 -110.60 REMARK 500 ASP D 95 -83.96 -55.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPH D 1306 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 FES B 302 S1 120.3 REMARK 620 3 FES B 302 S2 121.8 92.6 REMARK 620 4 CYS B 70 SG 107.9 117.7 93.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 73 SG REMARK 620 2 FES B 302 S1 125.6 REMARK 620 3 FES B 302 S2 111.3 92.9 REMARK 620 4 CYS B 85 SG 105.4 105.9 116.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 158 SG REMARK 620 2 SF4 B 303 S2 115.0 REMARK 620 3 SF4 B 303 S3 93.3 108.7 REMARK 620 4 SF4 B 303 S4 128.6 104.0 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 SF4 B 303 S1 104.2 REMARK 620 3 SF4 B 303 S3 111.3 105.0 REMARK 620 4 SF4 B 303 S4 123.7 106.5 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 164 SG REMARK 620 2 SF4 B 303 S1 100.5 REMARK 620 3 SF4 B 303 S2 119.1 103.2 REMARK 620 4 SF4 B 303 S3 117.5 104.7 109.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 168 SG REMARK 620 2 F3S B 304 S2 90.7 REMARK 620 3 F3S B 304 S3 89.9 111.9 REMARK 620 4 F3S B 304 S4 94.9 142.5 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 215 SG REMARK 620 2 F3S B 304 S1 97.0 REMARK 620 3 F3S B 304 S2 110.4 118.0 REMARK 620 4 F3S B 304 S3 128.1 96.1 106.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B 304 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 221 SG REMARK 620 2 F3S B 304 S1 110.2 REMARK 620 3 F3S B 304 S3 116.1 96.5 REMARK 620 4 F3S B 304 S4 112.3 119.7 100.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 303 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 225 SG REMARK 620 2 SF4 B 303 S1 104.5 REMARK 620 3 SF4 B 303 S2 121.3 103.6 REMARK 620 4 SF4 B 303 S4 115.8 106.1 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C1305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 101 NE2 REMARK 620 2 HEM C1305 NA 85.7 REMARK 620 3 HEM C1305 NB 97.2 92.0 REMARK 620 4 HEM C1305 NC 93.0 178.6 87.5 REMARK 620 5 HEM C1305 ND 84.4 86.4 177.7 94.1 REMARK 620 6 HIS D 79 NE2 170.9 92.3 91.8 89.1 86.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPH D 1306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ABV RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AE9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEA RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEB RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AED RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEE RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3AEG RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX BOUND WITH ANOTHER INHIBITOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF CHAIN D IS REFERRED IN REF 2 IN A5GZW8, UNIPROT. DBREF 3AEF A 1 622 UNP Q0QF01 DHSA_PIG 43 664 DBREF 3AEF B 1 252 UNP Q007T0 DHSB_PIG 29 280 DBREF 3AEF C 4 143 UNP D0VWV4 C560_PIG 30 169 DBREF 3AEF D 34 136 UNP A5GZW8 DHSD_PIG 57 159 SEQRES 1 A 622 SER SER ALA LYS VAL SER ASP ALA ILE SER THR GLN TYR SEQRES 2 A 622 PRO VAL VAL ASP HIS GLU PHE ASP ALA VAL VAL VAL GLY SEQRES 3 A 622 ALA GLY GLY ALA GLY LEU ARG ALA ALA PHE GLY LEU SER SEQRES 4 A 622 GLU ALA GLY PHE ASN THR ALA CYS VAL THR LYS LEU PHE SEQRES 5 A 622 PRO THR ARG SER HIS THR VAL ALA ALA GLN GLY GLY ILE SEQRES 6 A 622 ASN ALA ALA LEU GLY ASN MET GLU GLU ASP ASN TRP ARG SEQRES 7 A 622 TRP HIS PHE TYR ASP THR VAL LYS GLY SER ASP TRP LEU SEQRES 8 A 622 GLY ASP GLN ASP ALA ILE HIS TYR MET THR GLU GLN ALA SEQRES 9 A 622 PRO ALA SER VAL VAL GLU LEU GLU ASN TYR GLY MET PRO SEQRES 10 A 622 PHE SER ARG THR GLU ASP GLY LYS ILE TYR GLN ARG ALA SEQRES 11 A 622 PHE GLY GLY GLN SER LEU LYS PHE GLY LYS GLY GLY GLN SEQRES 12 A 622 ALA HIS ARG CYS CYS CYS VAL ALA ASP ARG THR GLY HIS SEQRES 13 A 622 SER LEU LEU HIS THR LEU TYR GLY ARG SER LEU ARG TYR SEQRES 14 A 622 ASP THR SER TYR PHE VAL GLU TYR PHE ALA LEU ASP LEU SEQRES 15 A 622 LEU MET GLU ASN GLY GLU CYS ARG GLY VAL ILE ALA LEU SEQRES 16 A 622 CYS ILE GLU ASP GLY SER ILE HIS ARG ILE ARG ALA ARG SEQRES 17 A 622 ASN THR VAL VAL ALA THR GLY GLY TYR GLY ARG THR TYR SEQRES 18 A 622 PHE SER CYS THR SER ALA HIS THR SER THR GLY ASP GLY SEQRES 19 A 622 THR ALA MET VAL THR ARG ALA GLY LEU PRO CYS GLN ASP SEQRES 20 A 622 LEU GLU PHE VAL GLN PHE HIS PRO THR GLY ILE TYR GLY SEQRES 21 A 622 ALA GLY CYS LEU ILE THR GLU GLY CYS ARG GLY GLU GLY SEQRES 22 A 622 GLY ILE LEU ILE ASN SER GLN GLY GLU ARG PHE MET GLU SEQRES 23 A 622 ARG TYR ALA PRO VAL ALA LYS ASP LEU ALA SER ARG ASP SEQRES 24 A 622 VAL VAL SER ARG SER MET THR LEU GLU ILE ARG GLU GLY SEQRES 25 A 622 ARG GLY CYS GLY PRO GLU LYS ASP HIS VAL TYR LEU GLN SEQRES 26 A 622 LEU HIS HIS LEU PRO PRO GLU GLN LEU ALA VAL ARG LEU SEQRES 27 A 622 PRO GLY ILE SER GLU THR ALA MET ILE PHE ALA GLY VAL SEQRES 28 A 622 ASP VAL THR LYS GLU PRO ILE PRO VAL LEU PRO THR VAL SEQRES 29 A 622 HIS TYR ASN MET GLY GLY ILE PRO THR ASN TYR LYS GLY SEQRES 30 A 622 GLN VAL LEU ARG HIS VAL ASN GLY GLN ASP GLN VAL VAL SEQRES 31 A 622 PRO GLY LEU TYR ALA CYS GLY GLU ALA ALA CYS ALA SER SEQRES 32 A 622 VAL HIS GLY ALA ASN ARG LEU GLY ALA ASN SER LEU LEU SEQRES 33 A 622 ASP LEU VAL VAL PHE GLY ARG ALA CYS ALA LEU SER ILE SEQRES 34 A 622 ALA GLU SER CYS ARG PRO GLY ASP LYS VAL PRO SER ILE SEQRES 35 A 622 LYS PRO ASN ALA GLY GLU GLU SER VAL MET ASN LEU ASP SEQRES 36 A 622 LYS LEU ARG PHE ALA ASN GLY THR ILE ARG THR SER GLU SEQRES 37 A 622 LEU ARG LEU SER MET GLN LYS SER MET GLN SER HIS ALA SEQRES 38 A 622 ALA VAL PHE ARG VAL GLY SER VAL LEU GLN GLU GLY CYS SEQRES 39 A 622 GLU LYS ILE LEU ARG LEU TYR GLY ASP LEU GLN HIS LEU SEQRES 40 A 622 LYS THR PHE ASP ARG GLY MET VAL TRP ASN THR ASP LEU SEQRES 41 A 622 VAL GLU THR LEU GLU LEU GLN ASN LEU MET LEU CYS ALA SEQRES 42 A 622 LEU GLN THR ILE TYR GLY ALA GLU ALA ARG LYS GLU SER SEQRES 43 A 622 ARG GLY ALA HIS ALA ARG GLU ASP PHE LYS GLU ARG VAL SEQRES 44 A 622 ASP GLU TYR ASP TYR SER LYS PRO ILE GLN GLY GLN GLN SEQRES 45 A 622 LYS LYS PRO PHE GLN GLU HIS TRP ARG LYS HIS THR LEU SEQRES 46 A 622 SER TYR VAL ASP VAL LYS THR GLY LYS VAL SER LEU GLU SEQRES 47 A 622 TYR ARG PRO VAL ILE ASP LYS THR LEU ASN GLU ALA ASP SEQRES 48 A 622 CYS ALA THR VAL PRO PRO ALA ILE ARG SER TYR SEQRES 1 B 252 ALA GLN THR ALA ALA ALA THR ALA PRO ARG ILE LYS LYS SEQRES 2 B 252 PHE ALA ILE TYR ARG TRP ASP PRO ASP LYS THR GLY ASP SEQRES 3 B 252 LYS PRO HIS MET GLN THR TYR GLU ILE ASP LEU ASN ASN SEQRES 4 B 252 CYS GLY PRO MET VAL LEU ASP ALA LEU ILE LYS ILE LYS SEQRES 5 B 252 ASN GLU ILE ASP SER THR LEU THR PHE ARG ARG SER CYS SEQRES 6 B 252 ARG GLU GLY ILE CYS GLY SER CYS ALA MET ASN ILE ASN SEQRES 7 B 252 GLY GLY ASN THR LEU ALA CYS THR ARG ARG ILE ASP THR SEQRES 8 B 252 ASN LEU ASP LYS VAL SER LYS ILE TYR PRO LEU PRO HIS SEQRES 9 B 252 MET TYR VAL ILE LYS ASP LEU VAL PRO ASP LEU SER ASN SEQRES 10 B 252 PHE TYR ALA GLN TYR LYS SER ILE GLU PRO TYR LEU LYS SEQRES 11 B 252 LYS LYS ASP GLU SER GLN GLU GLY LYS GLN GLN TYR LEU SEQRES 12 B 252 GLN SER ILE GLU GLU ARG GLU LYS LEU ASP GLY LEU TYR SEQRES 13 B 252 GLU CYS ILE LEU CYS ALA CYS CYS SER THR SER CYS PRO SEQRES 14 B 252 SER TYR TRP TRP ASN GLY ASP LYS TYR LEU GLY PRO ALA SEQRES 15 B 252 VAL LEU MET GLN ALA TYR ARG TRP MET ILE ASP SER ARG SEQRES 16 B 252 ASP ASP PHE THR GLU GLU ARG LEU ALA LYS LEU GLN ASP SEQRES 17 B 252 PRO PHE SER LEU TYR ARG CYS HIS THR ILE MET ASN CYS SEQRES 18 B 252 THR GLY THR CYS PRO LYS GLY LEU ASN PRO GLY LYS ALA SEQRES 19 B 252 ILE ALA GLU ILE LYS LYS MET MET ALA THR TYR LYS GLU SEQRES 20 B 252 LYS LYS ALA SER ALA SEQRES 1 C 140 LEU GLY THR THR ALA LYS GLU GLU MET GLU ARG PHE TRP SEQRES 2 C 140 ASN LYS ASN LEU GLY SER ASN ARG PRO LEU SER PRO HIS SEQRES 3 C 140 ILE THR ILE TYR ARG TRP SER LEU PRO MET ALA MET SER SEQRES 4 C 140 ILE CYS HIS ARG GLY THR GLY ILE ALA LEU SER ALA GLY SEQRES 5 C 140 VAL SER LEU PHE GLY LEU SER ALA LEU LEU LEU PRO GLY SEQRES 6 C 140 ASN PHE GLU SER HIS LEU GLU LEU VAL LYS SER LEU CYS SEQRES 7 C 140 LEU GLY PRO THR LEU ILE TYR THR ALA LYS PHE GLY ILE SEQRES 8 C 140 VAL PHE PRO LEU MET TYR HIS THR TRP ASN GLY ILE ARG SEQRES 9 C 140 HIS LEU ILE TRP ASP LEU GLY LYS GLY LEU THR ILE PRO SEQRES 10 C 140 GLN LEU THR GLN SER GLY VAL VAL VAL LEU ILE LEU THR SEQRES 11 C 140 VAL LEU SER SER VAL GLY LEU ALA ALA MET SEQRES 1 D 103 ALA SER SER LYS ALA ALA SER LEU HIS TRP THR GLY GLU SEQRES 2 D 103 ARG VAL VAL SER VAL LEU LEU LEU GLY LEU LEU PRO ALA SEQRES 3 D 103 ALA TYR LEU ASN PRO CYS SER ALA MET ASP TYR SER LEU SEQRES 4 D 103 ALA ALA ALA LEU THR LEU HIS GLY HIS TRP GLY ILE GLY SEQRES 5 D 103 GLN VAL VAL THR ASP TYR VAL ARG GLY ASP ALA LEU GLN SEQRES 6 D 103 LYS ALA ALA LYS ALA GLY LEU LEU ALA LEU SER ALA PHE SEQRES 7 D 103 THR PHE ALA GLY LEU CYS TYR PHE ASN TYR HIS ASP VAL SEQRES 8 D 103 GLY ILE CYS LYS ALA VAL ALA MET LEU TRP LYS LEU HET FAD A 700 53 HET FES B 302 4 HET SF4 B 303 8 HET F3S B 304 7 HET HEM C1305 43 HET EPH D1306 44 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM EPH L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL- HETNAM 2 EPH PHOSPHATIDYLETHANOLAMINE HETSYN HEM HEME FORMUL 5 FAD C27 H33 N9 O15 P2 FORMUL 6 FES FE2 S2 FORMUL 7 SF4 FE4 S4 FORMUL 8 F3S FE3 S4 FORMUL 9 HEM C34 H32 FE N4 O4 FORMUL 10 EPH C39 H68 N O8 P FORMUL 11 HOH *3(H2 O) HELIX 1 1 GLY A 28 ALA A 41 1 14 HELIX 2 2 PHE A 52 ALA A 61 5 10 HELIX 3 3 ASN A 76 SER A 88 1 13 HELIX 4 4 ASP A 93 GLY A 115 1 23 HELIX 5 5 ARG A 153 LEU A 167 1 15 HELIX 6 6 TYR A 217 TYR A 221 5 5 HELIX 7 7 GLY A 232 ALA A 241 1 10 HELIX 8 8 GLU A 267 GLU A 272 1 6 HELIX 9 9 PHE A 284 ALA A 289 1 6 HELIX 10 10 ALA A 292 ALA A 296 5 5 HELIX 11 11 SER A 297 GLU A 311 1 15 HELIX 12 12 PRO A 330 LEU A 338 1 9 HELIX 13 13 LEU A 338 GLY A 350 1 13 HELIX 14 14 ASN A 413 CYS A 433 1 21 HELIX 15 15 GLY A 447 PHE A 459 1 13 HELIX 16 16 THR A 466 ALA A 481 1 16 HELIX 17 17 VAL A 486 ASP A 503 1 18 HELIX 18 18 ASN A 517 ARG A 543 1 27 HELIX 19 19 PRO A 575 HIS A 579 5 5 HELIX 20 20 ASN B 38 CYS B 40 5 3 HELIX 21 21 MET B 43 ILE B 55 1 13 HELIX 22 22 LEU B 115 ILE B 125 1 11 HELIX 23 23 SER B 145 LYS B 151 1 7 HELIX 24 24 CYS B 164 SER B 167 5 4 HELIX 25 25 CYS B 168 GLY B 175 1 8 HELIX 26 26 LEU B 179 ILE B 192 1 14 HELIX 27 27 PHE B 198 LYS B 205 1 8 HELIX 28 28 MET B 219 CYS B 225 1 7 HELIX 29 29 ASN B 230 TYR B 245 1 16 HELIX 30 30 THR C 7 GLY C 21 1 15 HELIX 31 31 SER C 36 LEU C 66 1 31 HELIX 32 32 ASN C 69 SER C 79 1 11 HELIX 33 33 GLY C 83 GLY C 114 1 32 HELIX 34 34 THR C 118 MET C 143 1 26 HELIX 35 35 LYS D 37 ASN D 63 1 27 HELIX 36 36 CYS D 65 VAL D 92 1 28 HELIX 37 37 GLY D 94 ASP D 123 1 30 HELIX 38 38 GLY D 125 LYS D 135 1 11 SHEET 1 A 4 VAL A 15 GLU A 19 0 SHEET 2 A 4 ILE A 202 ARG A 206 1 O ARG A 204 N HIS A 18 SHEET 3 A 4 GLU A 188 CYS A 196 -1 N ALA A 194 O HIS A 203 SHEET 4 A 4 TYR A 177 GLU A 185 -1 N LEU A 183 O ARG A 190 SHEET 1 B 6 SER A 172 VAL A 175 0 SHEET 2 B 6 THR A 45 THR A 49 1 N CYS A 47 O PHE A 174 SHEET 3 B 6 ALA A 22 VAL A 25 1 N VAL A 24 O VAL A 48 SHEET 4 B 6 ASN A 209 VAL A 212 1 O VAL A 211 N VAL A 23 SHEET 5 B 6 GLN A 386 ALA A 395 1 O TYR A 394 N THR A 210 SHEET 6 B 6 GLN A 378 VAL A 383 -1 N VAL A 379 O VAL A 390 SHEET 1 C 3 ILE A 65 ASN A 66 0 SHEET 2 C 3 CYS A 147 CYS A 148 -1 O CYS A 148 N ILE A 65 SHEET 3 C 3 GLN A 128 ARG A 129 -1 N ARG A 129 O CYS A 147 SHEET 1 D 3 CYS A 245 GLN A 246 0 SHEET 2 D 3 LYS A 582 ASP A 589 -1 O SER A 586 N CYS A 245 SHEET 3 D 3 LYS A 594 PRO A 601 -1 O GLU A 598 N LEU A 585 SHEET 1 E 4 VAL A 251 ILE A 258 0 SHEET 2 E 4 ILE A 358 ASN A 367 -1 O TYR A 366 N GLN A 252 SHEET 3 E 4 VAL A 322 GLN A 325 -1 N LEU A 324 O ILE A 358 SHEET 4 E 4 ILE A 275 ILE A 277 -1 N ILE A 275 O GLN A 325 SHEET 1 F 2 ILE A 371 PRO A 372 0 SHEET 2 F 2 ALA A 400 CYS A 401 1 O CYS A 401 N ILE A 371 SHEET 1 G 2 ILE A 464 ARG A 465 0 SHEET 2 G 2 LEU A 507 LYS A 508 1 O LYS A 508 N ILE A 464 SHEET 1 H 2 PHE A 484 ARG A 485 0 SHEET 2 H 2 ALA A 551 ARG A 552 1 O ALA A 551 N ARG A 485 SHEET 1 I 5 HIS B 29 ASP B 36 0 SHEET 2 I 5 ILE B 11 ARG B 18 -1 N ARG B 18 O HIS B 29 SHEET 3 I 5 SER B 97 TYR B 100 1 O SER B 97 N ALA B 15 SHEET 4 I 5 ALA B 74 ILE B 77 -1 N ASN B 76 O TYR B 100 SHEET 5 I 5 GLY B 80 LEU B 83 -1 O THR B 82 N MET B 75 SHEET 1 J 2 VAL B 107 LYS B 109 0 SHEET 2 J 2 VAL B 112 PRO B 113 -1 O VAL B 112 N ILE B 108 LINK NE2 HIS A 57 C8M FAD A 700 1555 1555 1.86 LINK SG CYS B 65 FE1 FES B 302 1555 1555 2.11 LINK SG CYS B 70 FE1 FES B 302 1555 1555 2.42 LINK SG CYS B 73 FE2 FES B 302 1555 1555 2.26 LINK SG CYS B 85 FE2 FES B 302 1555 1555 2.42 LINK SG CYS B 158 FE1 SF4 B 303 1555 1555 2.32 LINK SG CYS B 161 FE2 SF4 B 303 1555 1555 2.59 LINK SG CYS B 164 FE4 SF4 B 303 1555 1555 2.33 LINK SG CYS B 168 FE4 F3S B 304 1555 1555 2.24 LINK SG CYS B 215 FE1 F3S B 304 1555 1555 2.41 LINK SG CYS B 221 FE3 F3S B 304 1555 1555 2.21 LINK SG CYS B 225 FE3 SF4 B 303 1555 1555 2.40 LINK NE2 HIS C 101 FE HEM C1305 1555 1555 2.19 LINK FE HEM C1305 NE2 HIS D 79 1555 1555 2.09 SITE 1 AC1 36 GLY A 26 ALA A 27 GLY A 28 GLY A 29 SITE 2 AC1 36 ALA A 30 VAL A 48 THR A 49 LYS A 50 SITE 3 AC1 36 LEU A 51 SER A 56 HIS A 57 THR A 58 SITE 4 AC1 36 ALA A 60 ALA A 61 GLN A 62 GLY A 63 SITE 5 AC1 36 GLY A 64 TYR A 177 PHE A 178 ALA A 179 SITE 6 AC1 36 ALA A 213 THR A 214 GLY A 215 THR A 225 SITE 7 AC1 36 ASP A 233 LEU A 264 HIS A 365 TYR A 366 SITE 8 AC1 36 GLY A 397 GLU A 398 ARG A 409 ALA A 412 SITE 9 AC1 36 ASN A 413 SER A 414 LEU A 415 LEU A 418 SITE 1 AC2 8 SER B 64 CYS B 65 ARG B 66 GLY B 68 SITE 2 AC2 8 CYS B 70 GLY B 71 CYS B 73 CYS B 85 SITE 1 AC3 9 CYS B 158 ILE B 159 CYS B 161 ALA B 162 SITE 2 AC3 9 CYS B 164 CYS B 225 PRO B 226 LYS B 227 SITE 3 AC3 9 PRO B 231 SITE 1 AC4 9 CYS B 168 TYR B 178 CYS B 215 HIS B 216 SITE 2 AC4 9 ILE B 218 MET B 219 ASN B 220 CYS B 221 SITE 3 AC4 9 ILE B 235 SITE 1 AC5 15 HIS B 216 HIS C 45 ARG C 46 GLY C 49 SITE 2 AC5 15 LEU C 52 SER C 53 VAL C 56 HIS C 101 SITE 3 AC5 15 THR C 102 HIS C 108 SER D 50 LEU D 53 SITE 4 AC5 15 LEU D 54 HIS D 79 GLY D 83 SITE 1 AC6 4 PHE C 59 TYR D 61 PRO D 64 TRP D 134 CRYST1 71.222 84.209 293.319 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003409 0.00000