HEADER HYDROLASE 04-FEB-10 3AEH TITLE INTEGRAL MEMBRANE DOMAIN OF AUTOTRANSPORTER HBP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN-BINDING PROTEASE HBP AUTOTRANSPORTER; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BARREL DOMAIN; COMPND 5 SYNONYM: HEMOGLOBIN-BINDING PROTEASE HBP, HEMOGLOBIN-BINDING PROTEASE COMPND 6 HBP TRANSLOCATOR, HELPER PEPTIDE, HBP, HAEMOGLOBIN PROTEASE; COMPND 7 EC: 3.4.21.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: HBP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-BARREL, AUTO-PROTEOLYTIC, REACTION INTERMEDIATE, MUTANT, CELL KEYWDS 2 MEMBRANE, CELL OUTER MEMBRANE, HYDROLASE, MEMBRANE, PROTEASE, KEYWDS 3 SECRETED, SERINE PROTEASE, TRANSMEMBRANE, VIRULENCE, INTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.TAJIMA,S.-Y.PARK,J.R.H.TAME REVDAT 4 29-MAY-24 3AEH 1 REMARK REVDAT 3 10-NOV-21 3AEH 1 SEQADV REVDAT 2 18-JAN-17 3AEH 1 JRNL VERSN REVDAT 1 07-JUL-10 3AEH 0 JRNL AUTH N.TAJIMA,F.KAWAI,S.Y.PARK,J.R.TAME JRNL TITL A NOVEL INTEIN-LIKE AUTOPROTEOLYTIC MECHANISM IN JRNL TITL 2 AUTOTRANSPORTER PROTEINS. JRNL REF J.MOL.BIOL. V. 402 645 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20615416 JRNL DOI 10.1016/J.JMB.2010.06.068 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 42940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3050 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.051 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4406 ; 0.025 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5942 ; 2.067 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 552 ; 6.909 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;37.274 ;23.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;15.893 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.225 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.180 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3464 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2706 ; 1.332 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4263 ; 2.449 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1700 ; 4.097 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1677 ; 6.268 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2154 ; 0.36 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2154 ; 0.44 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000029151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46742 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.0, 55% (V/V) MPD, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.44650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1259 REMARK 465 PHE A 1260 REMARK 465 ASN A 1261 REMARK 465 TRP A 1262 REMARK 465 ASN A 1263 REMARK 465 ASP A 1264 REMARK 465 SER A 1265 REMARK 465 GLY A 1266 REMARK 465 MET A 1267 REMARK 465 ASP A 1268 REMARK 465 VAL A 1269 REMARK 465 SER A 1270 REMARK 465 MET A 1271 REMARK 465 ARG A 1272 REMARK 465 ARG A 1273 REMARK 465 ALA A 1314 REMARK 465 ASP A 1315 REMARK 465 VAL A 1316 REMARK 465 HIS A 1317 REMARK 465 LEU A 1318 REMARK 465 LYS A 1319 REMARK 465 ASP A 1320 REMARK 465 ALA A 1321 REMARK 465 ALA A 1322 REMARK 465 GLY A 1323 REMARK 465 GLU A 1324 REMARK 465 HIS A 1325 REMARK 465 GLN A 1326 REMARK 465 ILE A 1327 REMARK 465 ASN A 1328 REMARK 465 GLY A 1329 REMARK 465 THR B 1259 REMARK 465 PHE B 1260 REMARK 465 ASN B 1261 REMARK 465 TRP B 1262 REMARK 465 ASN B 1263 REMARK 465 ASP B 1264 REMARK 465 SER B 1265 REMARK 465 GLY B 1266 REMARK 465 MET B 1267 REMARK 465 ASP B 1268 REMARK 465 VAL B 1269 REMARK 465 SER B 1270 REMARK 465 MET B 1271 REMARK 465 ARG B 1272 REMARK 465 ARG B 1273 REMARK 465 ALA B 1314 REMARK 465 ASP B 1315 REMARK 465 VAL B 1316 REMARK 465 HIS B 1317 REMARK 465 LEU B 1318 REMARK 465 LYS B 1319 REMARK 465 ASP B 1320 REMARK 465 ALA B 1321 REMARK 465 ALA B 1322 REMARK 465 GLY B 1323 REMARK 465 GLU B 1324 REMARK 465 HIS B 1325 REMARK 465 GLN B 1326 REMARK 465 ILE B 1327 REMARK 465 ASN B 1328 REMARK 465 GLY B 1329 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 1331 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 243 O HOH B 266 2545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A1331 CB LYS A1331 CG 0.215 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1110 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A1110 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 LEU A1122 CB - CG - CD2 ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG B1121 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ILE B1199 CG1 - CB - CG2 ANGL. DEV. = -15.4 DEGREES REMARK 500 ASP B1295 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 LEU B1336 CB - CG - CD1 ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1100 -168.09 -128.77 REMARK 500 ASN A1113 77.51 -101.16 REMARK 500 PHE A1213 141.70 178.44 REMARK 500 ASP A1295 38.29 -144.51 REMARK 500 PHE A1360 -7.53 82.98 REMARK 500 ASN B1212 58.36 -91.29 REMARK 500 PHE B1213 149.51 -178.44 REMARK 500 PHE B1360 -11.48 83.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 1274 SER A 1275 144.93 REMARK 500 REMARK 500 REMARK: NULL DBREF 3AEH A 1075 1377 UNP O88093 HBP_ECOLX 1075 1377 DBREF 3AEH B 1075 1377 UNP O88093 HBP_ECOLX 1075 1377 SEQADV 3AEH GLY A 1072 UNP O88093 EXPRESSION TAG SEQADV 3AEH THR A 1073 UNP O88093 EXPRESSION TAG SEQADV 3AEH MET A 1074 UNP O88093 EXPRESSION TAG SEQADV 3AEH LEU A 1378 UNP O88093 EXPRESSION TAG SEQADV 3AEH GLU A 1379 UNP O88093 EXPRESSION TAG SEQADV 3AEH ASP A 1100 UNP O88093 ASN 1100 ENGINEERED MUTATION SEQADV 3AEH GLY B 1072 UNP O88093 EXPRESSION TAG SEQADV 3AEH THR B 1073 UNP O88093 EXPRESSION TAG SEQADV 3AEH MET B 1074 UNP O88093 EXPRESSION TAG SEQADV 3AEH LEU B 1378 UNP O88093 EXPRESSION TAG SEQADV 3AEH GLU B 1379 UNP O88093 EXPRESSION TAG SEQADV 3AEH ASP B 1100 UNP O88093 ASN 1100 ENGINEERED MUTATION SEQRES 1 A 308 GLY THR MET ALA ARG ASN ASP GLY GLN GLY LYS ALA ALA SEQRES 2 A 308 ALA THR PHE MET HIS ILE SER TYR ASN ASN PHE ILE THR SEQRES 3 A 308 GLU VAL ASP ASN LEU ASN LYS ARG MET GLY ASP LEU ARG SEQRES 4 A 308 ASP ILE ASN GLY GLU ALA GLY THR TRP VAL ARG LEU LEU SEQRES 5 A 308 ASN GLY SER GLY SER ALA ASP GLY GLY PHE THR ASP HIS SEQRES 6 A 308 TYR THR LEU LEU GLN MET GLY ALA ASP ARG LYS HIS GLU SEQRES 7 A 308 LEU GLY SER MET ASP LEU PHE THR GLY VAL MET ALA THR SEQRES 8 A 308 TYR THR ASP THR ASP ALA SER ALA ASP LEU TYR SER GLY SEQRES 9 A 308 LYS THR LYS SER TRP GLY GLY GLY PHE TYR ALA SER GLY SEQRES 10 A 308 LEU PHE ARG SER GLY ALA TYR PHE ASP VAL ILE ALA LYS SEQRES 11 A 308 TYR ILE HIS ASN GLU ASN LYS TYR ASP LEU ASN PHE ALA SEQRES 12 A 308 GLY ALA GLY LYS GLN ASN PHE ARG SER HIS SER LEU TYR SEQRES 13 A 308 ALA GLY ALA GLU VAL GLY TYR ARG TYR HIS LEU THR ASP SEQRES 14 A 308 THR THR PHE VAL GLU PRO GLN ALA GLU LEU VAL TRP GLY SEQRES 15 A 308 ARG LEU GLN GLY GLN THR PHE ASN TRP ASN ASP SER GLY SEQRES 16 A 308 MET ASP VAL SER MET ARG ARG ASN SER VAL ASN PRO LEU SEQRES 17 A 308 VAL GLY ARG THR GLY VAL VAL SER GLY LYS THR PHE SER SEQRES 18 A 308 GLY LYS ASP TRP SER LEU THR ALA ARG ALA GLY LEU HIS SEQRES 19 A 308 TYR GLU PHE ASP LEU THR ASP SER ALA ASP VAL HIS LEU SEQRES 20 A 308 LYS ASP ALA ALA GLY GLU HIS GLN ILE ASN GLY ARG LYS SEQRES 21 A 308 ASP SER ARG MET LEU TYR GLY VAL GLY LEU ASN ALA ARG SEQRES 22 A 308 PHE GLY ASP ASN THR ARG LEU GLY LEU GLU VAL GLU ARG SEQRES 23 A 308 SER ALA PHE GLY LYS TYR ASN THR ASP ASP ALA ILE ASN SEQRES 24 A 308 ALA ASN ILE ARG TYR SER PHE LEU GLU SEQRES 1 B 308 GLY THR MET ALA ARG ASN ASP GLY GLN GLY LYS ALA ALA SEQRES 2 B 308 ALA THR PHE MET HIS ILE SER TYR ASN ASN PHE ILE THR SEQRES 3 B 308 GLU VAL ASP ASN LEU ASN LYS ARG MET GLY ASP LEU ARG SEQRES 4 B 308 ASP ILE ASN GLY GLU ALA GLY THR TRP VAL ARG LEU LEU SEQRES 5 B 308 ASN GLY SER GLY SER ALA ASP GLY GLY PHE THR ASP HIS SEQRES 6 B 308 TYR THR LEU LEU GLN MET GLY ALA ASP ARG LYS HIS GLU SEQRES 7 B 308 LEU GLY SER MET ASP LEU PHE THR GLY VAL MET ALA THR SEQRES 8 B 308 TYR THR ASP THR ASP ALA SER ALA ASP LEU TYR SER GLY SEQRES 9 B 308 LYS THR LYS SER TRP GLY GLY GLY PHE TYR ALA SER GLY SEQRES 10 B 308 LEU PHE ARG SER GLY ALA TYR PHE ASP VAL ILE ALA LYS SEQRES 11 B 308 TYR ILE HIS ASN GLU ASN LYS TYR ASP LEU ASN PHE ALA SEQRES 12 B 308 GLY ALA GLY LYS GLN ASN PHE ARG SER HIS SER LEU TYR SEQRES 13 B 308 ALA GLY ALA GLU VAL GLY TYR ARG TYR HIS LEU THR ASP SEQRES 14 B 308 THR THR PHE VAL GLU PRO GLN ALA GLU LEU VAL TRP GLY SEQRES 15 B 308 ARG LEU GLN GLY GLN THR PHE ASN TRP ASN ASP SER GLY SEQRES 16 B 308 MET ASP VAL SER MET ARG ARG ASN SER VAL ASN PRO LEU SEQRES 17 B 308 VAL GLY ARG THR GLY VAL VAL SER GLY LYS THR PHE SER SEQRES 18 B 308 GLY LYS ASP TRP SER LEU THR ALA ARG ALA GLY LEU HIS SEQRES 19 B 308 TYR GLU PHE ASP LEU THR ASP SER ALA ASP VAL HIS LEU SEQRES 20 B 308 LYS ASP ALA ALA GLY GLU HIS GLN ILE ASN GLY ARG LYS SEQRES 21 B 308 ASP SER ARG MET LEU TYR GLY VAL GLY LEU ASN ALA ARG SEQRES 22 B 308 PHE GLY ASP ASN THR ARG LEU GLY LEU GLU VAL GLU ARG SEQRES 23 B 308 SER ALA PHE GLY LYS TYR ASN THR ASP ASP ALA ILE ASN SEQRES 24 B 308 ALA ASN ILE ARG TYR SER PHE LEU GLU FORMUL 3 HOH *282(H2 O) HELIX 1 1 GLY A 1072 GLU A 1098 1 27 HELIX 2 2 ASN A 1101 GLY A 1107 1 7 HELIX 3 3 GLY B 1072 GLU B 1098 1 27 HELIX 4 4 ASN B 1101 GLY B 1107 1 7 SHEET 1 A15 TYR A1236 HIS A1237 0 SHEET 2 A15 SER A1275 VAL A1276 0 SHEET 3 A15 GLY A1217 TYR A1234 0 SHEET 4 A15 ALA A1194 LEU A1211 -1 N ASN A1205 O SER A1223 SHEET 5 A15 TYR A1173 PHE A1190 -1 N SER A1174 O ASP A1210 SHEET 6 A15 MET A1153 ALA A1170 -1 N THR A1166 O THR A1177 SHEET 7 A15 THR A1134 LEU A1150 -1 N HIS A1148 O LEU A1155 SHEET 8 A15 ALA A1116 SER A1128 -1 N LEU A1123 O LEU A1139 SHEET 9 A15 ASN A1364 PHE A1377 -1 O ALA A1371 N LEU A1122 SHEET 10 A15 THR A1349 ALA A1359 -1 N GLU A1354 O ASN A1370 SHEET 11 A15 LYS A1331 PHE A1345 -1 N ALA A1343 O LEU A1351 SHEET 12 A15 TRP A1296 LEU A1310 -1 N ARG A1301 O GLY A1340 SHEET 13 A15 LEU A1279 SER A1292 -1 N PHE A1291 O LEU A1298 SHEET 14 A15 THR A1242 GLY A1257 -1 N GLU A1245 O VAL A1286 SHEET 15 A15 SER A1275 VAL A1276 -1 O VAL A1276 N LEU A1255 SHEET 1 B15 TYR B1236 THR B1239 0 SHEET 2 B15 SER B1275 VAL B1276 0 SHEET 3 B15 GLY B1217 TYR B1234 0 SHEET 4 B15 ALA B1194 LEU B1211 -1 N ASN B1205 O SER B1223 SHEET 5 B15 TYR B1173 PHE B1190 -1 N SER B1174 O ASP B1210 SHEET 6 B15 MET B1153 ALA B1170 -1 N ASP B1154 O LEU B1189 SHEET 7 B15 THR B1134 LEU B1150 -1 N HIS B1148 O LEU B1155 SHEET 8 B15 ALA B1116 SER B1128 -1 N ARG B1121 O GLN B1141 SHEET 9 B15 ASN B1364 PHE B1377 -1 O TYR B1375 N THR B1118 SHEET 10 B15 THR B1349 ALA B1359 -1 N GLU B1354 O ASN B1370 SHEET 11 B15 LYS B1331 PHE B1345 -1 N ALA B1343 O LEU B1351 SHEET 12 B15 TRP B1296 LEU B1310 -1 N HIS B1305 O LEU B1336 SHEET 13 B15 LEU B1279 SER B1292 -1 N LEU B1279 O LEU B1310 SHEET 14 B15 THR B1242 GLY B1257 -1 N GLU B1245 O VAL B1286 SHEET 15 B15 SER B1275 VAL B1276 -1 O VAL B1276 N LEU B1255 CRYST1 73.011 68.893 78.378 90.00 117.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013697 0.000000 0.007206 0.00000 SCALE2 0.000000 0.014515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014417 0.00000