HEADER HYDROLASE 25-FEB-10 3AFB TITLE CRYSTAL STRUCTURES OF CATALYTIC SITE MUTANTS OF ACTIVE DOMAIN 2 OF TITLE 2 CHITINASE FROM PYROCOCCUS FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CHITINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (AD2), UNP RESIDUES 409-717; COMPND 5 EC: 3.2.1.14; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: PF1233; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS (BETA/ALPHA)8-BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.TSUJI REVDAT 3 13-MAR-24 3AFB 1 REMARK SEQADV REVDAT 2 29-DEC-10 3AFB 1 JRNL REVDAT 1 09-JUN-10 3AFB 0 JRNL AUTH H.TSUJI,S.NISHIMURA,T.INUI,Y.KADO,K.ISHIKAWA,T.NAKAMURA, JRNL AUTH 2 K.UEGAKI JRNL TITL KINETIC AND CRYSTALLOGRAPHIC ANALYSES OF THE CATALYTIC JRNL TITL 2 DOMAIN OF CHITINASE FROM PYROCOCCUS FURIOSUS- THE ROLE OF JRNL TITL 3 CONSERVED RESIDUES IN THE ACTIVE SITE JRNL REF FEBS J. V. 277 2683 2010 JRNL REFN ISSN 1742-464X JRNL PMID 20553502 JRNL DOI 10.1111/J.1742-464X.2010.07685.X REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 83365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 324 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4760 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 474 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.481 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5028 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6866 ; 1.255 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 623 ; 6.031 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;35.718 ;24.410 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 784 ;11.326 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;24.236 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3894 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2497 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3525 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 385 ; 0.238 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 1.420 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 91 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3133 ; 0.823 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4954 ; 1.165 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2218 ; 2.020 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1904 ; 3.210 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AFB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000029181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.95600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.70100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.99850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.70100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.95600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.99850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 707 REMARK 465 ALA A 708 REMARK 465 GLN A 709 REMARK 465 THR A 710 REMARK 465 SER A 711 REMARK 465 GLU A 712 REMARK 465 ALA A 713 REMARK 465 SER A 714 REMARK 465 VAL A 715 REMARK 465 PRO A 716 REMARK 465 THR A 717 REMARK 465 SER B 707 REMARK 465 ALA B 708 REMARK 465 GLN B 709 REMARK 465 THR B 710 REMARK 465 SER B 711 REMARK 465 GLU B 712 REMARK 465 ALA B 713 REMARK 465 SER B 714 REMARK 465 VAL B 715 REMARK 465 PRO B 716 REMARK 465 THR B 717 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 366 O HOH B 748 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 705 CA - C - N ANGL. DEV. = 19.7 DEGREES REMARK 500 THR B 705 O - C - N ANGL. DEV. = -22.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 461 30.44 39.00 REMARK 500 SER A 463 -16.10 -148.37 REMARK 500 SER A 463 31.49 -178.80 REMARK 500 ALA A 563 -119.60 -93.74 REMARK 500 TYR A 590 -40.67 67.14 REMARK 500 LYS A 638 -10.27 78.61 REMARK 500 ALA B 461 13.27 59.09 REMARK 500 SER B 463 -31.61 -143.58 REMARK 500 ALA B 563 -119.44 -85.68 REMARK 500 TYR B 590 -48.61 71.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 718 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A4W RELATED DB: PDB REMARK 900 RELATED ID: 3A4X RELATED DB: PDB DBREF 3AFB A 409 717 UNP Q8U1H5 Q8U1H5_PYRFU 409 717 DBREF 3AFB B 409 717 UNP Q8U1H5 Q8U1H5_PYRFU 409 717 SEQADV 3AFB GLY A 407 UNP Q8U1H5 EXPRESSION TAG SEQADV 3AFB PRO A 408 UNP Q8U1H5 EXPRESSION TAG SEQADV 3AFB ALA A 524 UNP Q8U1H5 ASP 524 ENGINEERED MUTATION SEQADV 3AFB GLY B 407 UNP Q8U1H5 EXPRESSION TAG SEQADV 3AFB PRO B 408 UNP Q8U1H5 EXPRESSION TAG SEQADV 3AFB ALA B 524 UNP Q8U1H5 ASP 524 ENGINEERED MUTATION SEQRES 1 A 311 GLY PRO ASN ALA ASN PRO ILE PRO GLU HIS PHE PHE ALA SEQRES 2 A 311 PRO TYR ILE ASP MET SER LEU SER VAL HIS LYS PRO LEU SEQRES 3 A 311 VAL GLU TYR ALA LYS LEU THR GLY THR LYS TYR PHE THR SEQRES 4 A 311 LEU ALA PHE ILE LEU TYR SER SER VAL TYR ASN GLY PRO SEQRES 5 A 311 ALA TRP ALA GLY SER ILE PRO LEU GLU LYS PHE VAL ASP SEQRES 6 A 311 GLU VAL ARG GLU LEU ARG GLU ILE GLY GLY GLU VAL ILE SEQRES 7 A 311 ILE ALA PHE GLY GLY ALA VAL GLY PRO TYR LEU CYS GLN SEQRES 8 A 311 GLN ALA SER THR PRO GLU GLN LEU ALA GLU TRP TYR ILE SEQRES 9 A 311 LYS VAL ILE ASP THR TYR ASN ALA THR TYR LEU ASP PHE SEQRES 10 A 311 ALA ILE GLU ALA GLY ILE ASP ALA ASP LYS LEU ALA ASP SEQRES 11 A 311 ALA LEU LEU ILE VAL GLN ARG GLU ARG PRO TRP VAL LYS SEQRES 12 A 311 PHE SER PHE THR LEU PRO SER ASP PRO GLY ILE GLY LEU SEQRES 13 A 311 ALA GLY GLY TYR GLY ILE ILE GLU THR MET ALA LYS LYS SEQRES 14 A 311 GLY VAL ARG VAL ASP ARG VAL ASN PRO MET THR MET ASP SEQRES 15 A 311 TYR TYR TRP THR PRO SER ASN ALA GLU ASN ALA ILE LYS SEQRES 16 A 311 VAL ALA GLU ASN VAL PHE ARG GLN LEU LYS GLN ILE TYR SEQRES 17 A 311 PRO GLU LYS SER ASP GLU GLU ILE TRP LYS MET ILE GLY SEQRES 18 A 311 LEU THR PRO MET ILE GLY VAL ASN ASP ASP LYS SER VAL SEQRES 19 A 311 PHE THR LEU GLU ASP ALA GLN GLN LEU VAL ASP TRP ALA SEQRES 20 A 311 ILE GLN HIS LYS ILE GLY SER LEU ALA PHE TRP SER VAL SEQRES 21 A 311 ASP ARG ASP HIS PRO GLY PRO THR GLY GLU VAL SER PRO SEQRES 22 A 311 LEU HIS ARG GLY THR ASN ASP PRO ASP TRP ALA PHE SER SEQRES 23 A 311 HIS VAL PHE VAL LYS PHE MET GLU ALA PHE GLY TYR THR SEQRES 24 A 311 PHE SER ALA GLN THR SER GLU ALA SER VAL PRO THR SEQRES 1 B 311 GLY PRO ASN ALA ASN PRO ILE PRO GLU HIS PHE PHE ALA SEQRES 2 B 311 PRO TYR ILE ASP MET SER LEU SER VAL HIS LYS PRO LEU SEQRES 3 B 311 VAL GLU TYR ALA LYS LEU THR GLY THR LYS TYR PHE THR SEQRES 4 B 311 LEU ALA PHE ILE LEU TYR SER SER VAL TYR ASN GLY PRO SEQRES 5 B 311 ALA TRP ALA GLY SER ILE PRO LEU GLU LYS PHE VAL ASP SEQRES 6 B 311 GLU VAL ARG GLU LEU ARG GLU ILE GLY GLY GLU VAL ILE SEQRES 7 B 311 ILE ALA PHE GLY GLY ALA VAL GLY PRO TYR LEU CYS GLN SEQRES 8 B 311 GLN ALA SER THR PRO GLU GLN LEU ALA GLU TRP TYR ILE SEQRES 9 B 311 LYS VAL ILE ASP THR TYR ASN ALA THR TYR LEU ASP PHE SEQRES 10 B 311 ALA ILE GLU ALA GLY ILE ASP ALA ASP LYS LEU ALA ASP SEQRES 11 B 311 ALA LEU LEU ILE VAL GLN ARG GLU ARG PRO TRP VAL LYS SEQRES 12 B 311 PHE SER PHE THR LEU PRO SER ASP PRO GLY ILE GLY LEU SEQRES 13 B 311 ALA GLY GLY TYR GLY ILE ILE GLU THR MET ALA LYS LYS SEQRES 14 B 311 GLY VAL ARG VAL ASP ARG VAL ASN PRO MET THR MET ASP SEQRES 15 B 311 TYR TYR TRP THR PRO SER ASN ALA GLU ASN ALA ILE LYS SEQRES 16 B 311 VAL ALA GLU ASN VAL PHE ARG GLN LEU LYS GLN ILE TYR SEQRES 17 B 311 PRO GLU LYS SER ASP GLU GLU ILE TRP LYS MET ILE GLY SEQRES 18 B 311 LEU THR PRO MET ILE GLY VAL ASN ASP ASP LYS SER VAL SEQRES 19 B 311 PHE THR LEU GLU ASP ALA GLN GLN LEU VAL ASP TRP ALA SEQRES 20 B 311 ILE GLN HIS LYS ILE GLY SER LEU ALA PHE TRP SER VAL SEQRES 21 B 311 ASP ARG ASP HIS PRO GLY PRO THR GLY GLU VAL SER PRO SEQRES 22 B 311 LEU HIS ARG GLY THR ASN ASP PRO ASP TRP ALA PHE SER SEQRES 23 B 311 HIS VAL PHE VAL LYS PHE MET GLU ALA PHE GLY TYR THR SEQRES 24 B 311 PHE SER ALA GLN THR SER GLU ALA SER VAL PRO THR HET MG A 1 1 HET GOL A 718 6 HET GOL A 2 6 HET GOL A 3 6 HET MG B 2 1 HET GOL B 4 6 HET SO4 B 1 5 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *474(H2 O) HELIX 1 1 PRO A 431 GLY A 440 1 10 HELIX 2 2 PRO A 465 LYS A 468 5 4 HELIX 3 3 PHE A 469 ILE A 479 1 11 HELIX 4 4 TYR A 494 ALA A 499 1 6 HELIX 5 5 THR A 501 ASN A 517 1 17 HELIX 6 6 ASP A 530 ARG A 545 1 16 HELIX 7 7 GLY A 564 GLY A 576 1 13 HELIX 8 8 ASN A 595 TYR A 614 1 20 HELIX 9 9 SER A 618 ILE A 626 1 9 HELIX 10 10 THR A 642 LYS A 657 1 16 HELIX 11 11 SER A 665 ASP A 669 5 5 HELIX 12 12 TRP A 689 PHE A 702 1 14 HELIX 13 13 PRO B 431 GLY B 440 1 10 HELIX 14 14 PHE B 469 GLU B 478 1 10 HELIX 15 15 TYR B 494 ALA B 499 1 6 HELIX 16 16 THR B 501 ASN B 517 1 17 HELIX 17 17 ASP B 530 ARG B 545 1 16 HELIX 18 18 GLY B 565 GLY B 576 1 12 HELIX 19 19 ASN B 595 TYR B 614 1 20 HELIX 20 20 SER B 618 ILE B 626 1 9 HELIX 21 21 THR B 642 LYS B 657 1 16 HELIX 22 22 SER B 665 ASP B 669 5 5 HELIX 23 23 TRP B 689 ALA B 701 1 13 SHEET 1 A 3 PHE A 417 PHE A 418 0 SHEET 2 A 3 SER A 660 LEU A 661 1 O LEU A 661 N PHE A 417 SHEET 3 A 3 GLY A 627 LEU A 628 1 N LEU A 628 O SER A 660 SHEET 1 B 6 TYR A 421 ASP A 423 0 SHEET 2 B 6 TYR A 443 SER A 452 1 O ALA A 447 N ILE A 422 SHEET 3 B 6 GLU A 482 GLY A 489 1 O ILE A 484 N LEU A 446 SHEET 4 B 6 TYR A 520 ILE A 525 1 O ALA A 524 N PHE A 487 SHEET 5 B 6 LYS A 549 ASP A 557 1 O LYS A 549 N LEU A 521 SHEET 6 B 6 GLY A 561 LEU A 562 -1 O GLY A 561 N ASP A 557 SHEET 1 C 6 GLY A 457 TRP A 460 0 SHEET 2 C 6 TYR A 443 SER A 452 -1 N SER A 452 O GLY A 457 SHEET 3 C 6 GLU A 482 GLY A 489 1 O ILE A 484 N LEU A 446 SHEET 4 C 6 TYR A 520 ILE A 525 1 O ALA A 524 N PHE A 487 SHEET 5 C 6 LYS A 549 ASP A 557 1 O LYS A 549 N LEU A 521 SHEET 6 C 6 ARG A 581 MET A 585 1 O ASN A 583 N PHE A 552 SHEET 1 D 2 GLY A 633 VAL A 634 0 SHEET 2 D 2 VAL A 640 PHE A 641 -1 O PHE A 641 N GLY A 633 SHEET 1 E 3 PHE B 417 PHE B 418 0 SHEET 2 E 3 SER B 660 LEU B 661 1 O LEU B 661 N PHE B 417 SHEET 3 E 3 GLY B 627 LEU B 628 1 N LEU B 628 O SER B 660 SHEET 1 F 6 TYR B 421 ASP B 423 0 SHEET 2 F 6 TYR B 443 SER B 452 1 O ALA B 447 N ILE B 422 SHEET 3 F 6 GLU B 482 GLY B 489 1 O ILE B 484 N LEU B 446 SHEET 4 F 6 TYR B 520 ILE B 525 1 O ALA B 524 N GLY B 489 SHEET 5 F 6 LYS B 549 ASP B 557 1 O SER B 551 N PHE B 523 SHEET 6 F 6 GLY B 561 LEU B 562 -1 O GLY B 561 N ASP B 557 SHEET 1 G 7 ILE B 464 PRO B 465 0 SHEET 2 G 7 GLY B 457 TRP B 460 -1 N TRP B 460 O ILE B 464 SHEET 3 G 7 TYR B 443 SER B 452 -1 N LEU B 450 O ALA B 459 SHEET 4 G 7 GLU B 482 GLY B 489 1 O ILE B 484 N LEU B 446 SHEET 5 G 7 TYR B 520 ILE B 525 1 O ALA B 524 N GLY B 489 SHEET 6 G 7 LYS B 549 ASP B 557 1 O SER B 551 N PHE B 523 SHEET 7 G 7 ARG B 581 MET B 585 1 O ASN B 583 N PHE B 552 SHEET 1 H 2 GLY B 633 VAL B 634 0 SHEET 2 H 2 VAL B 640 PHE B 641 -1 O PHE B 641 N GLY B 633 CISPEP 1 ALA A 447 PHE A 448 0 -14.80 CISPEP 2 GLY A 492 PRO A 493 0 3.19 CISPEP 3 TRP A 664 SER A 665 0 3.26 CISPEP 4 ALA B 447 PHE B 448 0 -10.69 CISPEP 5 GLY B 492 PRO B 493 0 2.19 CISPEP 6 TRP B 664 SER B 665 0 2.70 SITE 1 AC1 4 HOH A 49 LEU A 495 CYS A 496 TYR A 509 SITE 1 AC2 6 HOH A 51 HOH A 308 HOH A 323 TRP A 664 SITE 2 AC2 6 VAL A 677 SER A 678 SITE 1 AC3 6 HOH A 308 HOH A 323 PHE A 448 ALA A 490 SITE 2 AC3 6 GLU A 526 HOH A 728 SITE 1 AC4 5 HOH A 152 LYS A 617 GLU A 621 HOH B 199 SITE 2 AC4 5 ASP B 530 SITE 1 AC5 4 HOH B 8 LEU B 495 CYS B 496 TYR B 509 SITE 1 AC6 5 HOH B 370 PHE B 448 ALA B 490 GLU B 526 SITE 2 AC6 5 TRP B 664 SITE 1 AC7 5 GLU A 616 GLU A 621 ASP B 530 ASP B 532 SITE 2 AC7 5 HOH B 740 CRYST1 89.912 91.997 107.402 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011122 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009311 0.00000