HEADER OXIDOREDUCTASE 30-MAR-10 3AGC TITLE F218V MUTANT OF THE SUBSTRATE-BOUND RED CHLOROPHYLL CATABOLITE TITLE 2 REDUCTASE FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RED CHLOROPHYLL CATABOLITE REDUCTASE, CHLOROPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 49-319; COMPND 5 SYNONYM: RCC REDUCTASE, ATRCCR, ACCELERATED CELL DEATH PROTEIN 2; COMPND 6 EC: 1.3.1.80; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS, THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RCCR, ACD2, AT4G37000, C7A10_360; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS CHLOROPHYLL DEGRADATION, SUBSTRATE-BOUND ENZYME, CHLOROPHYLL KEYWDS 2 CATABOLISM, CHLOROPLAST, NADP, OXIDOREDUCTASE, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR M.SUGISHIMA,K.FUKUYAMA REVDAT 3 01-NOV-23 3AGC 1 REMARK SEQADV LINK REVDAT 2 22-JAN-14 3AGC 1 JRNL VERSN REVDAT 1 01-SEP-10 3AGC 0 JRNL AUTH M.SUGISHIMA,Y.OKAMOTO,M.NOGUCHI,T.KOHCHI,H.TAMIAKI, JRNL AUTH 2 K.FUKUYAMA JRNL TITL CRYSTAL STRUCTURES OF THE SUBSTRATE-BOUND FORMS OF RED JRNL TITL 2 CHLOROPHYLL CATABOLITE REDUCTASE: IMPLICATIONS FOR JRNL TITL 3 SITE-SPECIFIC AND STEREOSPECIFIC REACTION JRNL REF J.MOL.BIOL. V. 402 879 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20727901 JRNL DOI 10.1016/J.JMB.2010.08.021 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1735 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2339 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4225 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4371 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5926 ; 1.526 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 527 ; 5.457 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;35.591 ;24.171 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 791 ;16.736 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.259 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 672 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3278 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2111 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2980 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 346 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.088 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2675 ; 0.428 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4367 ; 0.828 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1782 ; 1.166 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1559 ; 1.965 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000029218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35600 REMARK 200 FOR SHELL : 8.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ZXL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 2000 MONOMETHYL ETHER, 0.1M REMARK 280 AMMONIUM ACETATE, 3% DIOXANE, 0.1M MES, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.54450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.75900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.16050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.75900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.54450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.16050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 44 REMARK 465 PRO A 45 REMARK 465 LEU A 46 REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 GLY B 44 REMARK 465 PRO B 45 REMARK 465 LEU B 46 REMARK 465 GLY B 47 REMARK 465 SER B 48 REMARK 465 ARG B 49 REMARK 465 ARG B 50 REMARK 465 SER B 159 REMARK 465 SER B 160 REMARK 465 GLU B 262 REMARK 465 GLU B 263 REMARK 465 GLU B 264 REMARK 465 LYS B 265 REMARK 465 ILE B 266 REMARK 465 VAL B 267 REMARK 465 LEU B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 LYS B 234 CG CD CE NZ REMARK 470 GLU B 270 CG CD OE1 OE2 REMARK 470 GLU B 271 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 55 62.16 35.96 REMARK 500 TYR A 57 -12.89 74.38 REMARK 500 PRO A 128 -7.08 -55.94 REMARK 500 HIS A 242 -54.98 -129.77 REMARK 500 LYS A 260 76.09 35.80 REMARK 500 GLU A 261 50.39 -57.74 REMARK 500 GLU A 262 -156.97 -110.47 REMARK 500 GLU A 263 100.54 -44.89 REMARK 500 PHE B 55 64.68 28.54 REMARK 500 PRO B 128 -33.22 -36.66 REMARK 500 HIS B 242 -60.12 -120.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 199 O REMARK 620 2 LEU A 201 O 89.7 REMARK 620 3 VAL A 204 O 101.9 84.5 REMARK 620 4 HOH A 351 O 87.0 175.8 93.6 REMARK 620 5 HOH A 365 O 85.9 83.2 165.4 99.2 REMARK 620 6 HOH A 383 O 167.0 99.9 87.9 83.8 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 2 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 199 O REMARK 620 2 LEU B 201 O 86.9 REMARK 620 3 VAL B 204 O 104.4 83.3 REMARK 620 4 HOH B 327 O 84.7 86.1 165.5 REMARK 620 5 HOH B 328 O 170.1 96.1 85.3 86.1 REMARK 620 6 HOH B 329 O 84.7 171.6 98.2 93.8 92.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RCC A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZXL RELATED DB: PDB REMARK 900 SUBSTRATE-FREE WILD-TYPE ENZYME REMARK 900 RELATED ID: 3AGA RELATED DB: PDB REMARK 900 SUBSTRATE-BOUND WILD-TYPE ENZYME REMARK 900 RELATED ID: 3AGB RELATED DB: PDB REMARK 900 SUBSTRATE-FREE SAME F218V MUTANT ENZYME DBREF 3AGC A 49 319 UNP Q8LDU4 RCCR_ARATH 49 319 DBREF 3AGC B 49 319 UNP Q8LDU4 RCCR_ARATH 49 319 SEQADV 3AGC GLY A 44 UNP Q8LDU4 EXPRESSION TAG SEQADV 3AGC PRO A 45 UNP Q8LDU4 EXPRESSION TAG SEQADV 3AGC LEU A 46 UNP Q8LDU4 EXPRESSION TAG SEQADV 3AGC GLY A 47 UNP Q8LDU4 EXPRESSION TAG SEQADV 3AGC SER A 48 UNP Q8LDU4 EXPRESSION TAG SEQADV 3AGC VAL A 218 UNP Q8LDU4 PHE 218 ENGINEERED MUTATION SEQADV 3AGC GLY B 44 UNP Q8LDU4 EXPRESSION TAG SEQADV 3AGC PRO B 45 UNP Q8LDU4 EXPRESSION TAG SEQADV 3AGC LEU B 46 UNP Q8LDU4 EXPRESSION TAG SEQADV 3AGC GLY B 47 UNP Q8LDU4 EXPRESSION TAG SEQADV 3AGC SER B 48 UNP Q8LDU4 EXPRESSION TAG SEQADV 3AGC VAL B 218 UNP Q8LDU4 PHE 218 ENGINEERED MUTATION SEQRES 1 A 276 GLY PRO LEU GLY SER ARG ARG LYS PHE MET GLU PHE PRO SEQRES 2 A 276 TYR VAL SER PRO THR ARG LYS GLN LEU MET VAL ASP LEU SEQRES 3 A 276 MET SER THR VAL GLU ASN ARG LEU GLN SER GLN LEU LEU SEQRES 4 A 276 PRO CYS ASN LEU PRO PRO ASP VAL ARG ASN PHE ASN ASN SEQRES 5 A 276 PRO ASN GLY SER ALA GLU ALA SER LEU HIS ILE ARG SER SEQRES 6 A 276 GLY ASP LYS SER SER PRO ILE ASP PHE VAL ILE GLY SER SEQRES 7 A 276 TRP ILE HIS CYS LYS ILE PRO THR GLY VAL SER LEU ASN SEQRES 8 A 276 ILE THR SER ILE SER GLY PHE LEU ASN SER SER THR LYS SEQRES 9 A 276 ALA PRO ASN PHE VAL VAL GLU LEU ILE GLN SER SER SER SEQRES 10 A 276 LYS SER LEU VAL LEU ILE LEU ASP LEU PRO HIS ARG LYS SEQRES 11 A 276 ASP LEU VAL LEU ASN PRO ASP TYR LEU LYS GLU TYR TYR SEQRES 12 A 276 GLN ASP THR ALA LEU ASP SER HIS ARG GLN SER LEU LEU SEQRES 13 A 276 LYS LEU PRO GLU VAL ASN PRO TYR VAL SER PRO SER LEU SEQRES 14 A 276 PHE VAL ARG SER ALA VAL SER PRO THR ALA SER MET LEU SEQRES 15 A 276 LYS ILE ASP ALA GLU GLU GLU ASP LYS LEU GLU GLU ILE SEQRES 16 A 276 LEU ARG ASP HIS VAL SER PRO ALA ALA LYS GLU VAL LEU SEQRES 17 A 276 GLU VAL TRP LEU GLU ARG CYS VAL LYS GLU GLU GLU GLU SEQRES 18 A 276 LYS ILE VAL VAL GLY GLU GLU GLU ARG MET GLU LEU GLU SEQRES 19 A 276 ARG ARG ASP LYS SER PHE ARG ARG LYS SER ILE GLU ASP SEQRES 20 A 276 ASP LEU ASP LEU GLN PHE PRO ARG MET PHE GLY GLU GLU SEQRES 21 A 276 VAL SER SER ARG VAL VAL HIS ALA ILE LYS GLU ALA PHE SEQRES 22 A 276 GLY VAL LEU SEQRES 1 B 276 GLY PRO LEU GLY SER ARG ARG LYS PHE MET GLU PHE PRO SEQRES 2 B 276 TYR VAL SER PRO THR ARG LYS GLN LEU MET VAL ASP LEU SEQRES 3 B 276 MET SER THR VAL GLU ASN ARG LEU GLN SER GLN LEU LEU SEQRES 4 B 276 PRO CYS ASN LEU PRO PRO ASP VAL ARG ASN PHE ASN ASN SEQRES 5 B 276 PRO ASN GLY SER ALA GLU ALA SER LEU HIS ILE ARG SER SEQRES 6 B 276 GLY ASP LYS SER SER PRO ILE ASP PHE VAL ILE GLY SER SEQRES 7 B 276 TRP ILE HIS CYS LYS ILE PRO THR GLY VAL SER LEU ASN SEQRES 8 B 276 ILE THR SER ILE SER GLY PHE LEU ASN SER SER THR LYS SEQRES 9 B 276 ALA PRO ASN PHE VAL VAL GLU LEU ILE GLN SER SER SER SEQRES 10 B 276 LYS SER LEU VAL LEU ILE LEU ASP LEU PRO HIS ARG LYS SEQRES 11 B 276 ASP LEU VAL LEU ASN PRO ASP TYR LEU LYS GLU TYR TYR SEQRES 12 B 276 GLN ASP THR ALA LEU ASP SER HIS ARG GLN SER LEU LEU SEQRES 13 B 276 LYS LEU PRO GLU VAL ASN PRO TYR VAL SER PRO SER LEU SEQRES 14 B 276 PHE VAL ARG SER ALA VAL SER PRO THR ALA SER MET LEU SEQRES 15 B 276 LYS ILE ASP ALA GLU GLU GLU ASP LYS LEU GLU GLU ILE SEQRES 16 B 276 LEU ARG ASP HIS VAL SER PRO ALA ALA LYS GLU VAL LEU SEQRES 17 B 276 GLU VAL TRP LEU GLU ARG CYS VAL LYS GLU GLU GLU GLU SEQRES 18 B 276 LYS ILE VAL VAL GLY GLU GLU GLU ARG MET GLU LEU GLU SEQRES 19 B 276 ARG ARG ASP LYS SER PHE ARG ARG LYS SER ILE GLU ASP SEQRES 20 B 276 ASP LEU ASP LEU GLN PHE PRO ARG MET PHE GLY GLU GLU SEQRES 21 B 276 VAL SER SER ARG VAL VAL HIS ALA ILE LYS GLU ALA PHE SEQRES 22 B 276 GLY VAL LEU HET RCC A1000 46 HET NA A 1 1 HET NA B 2 1 HETNAM RCC 3-{(2Z,3S,4S)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXO-1,5- HETNAM 2 RCC DIHYDRO-2H-PYRROL-2-YLIDENE)METHYL]-2-[(5R)-2-[(3- HETNAM 3 RCC ETHYL-5-FORMYL-4-METHYL-1H-PYRROL-2-YL)METHYL]-5- HETNAM 4 RCC (METHOXYCARBONYL)-3-METHYL-4-OXO-4,5- HETNAM 5 RCC DIHYDROCYCLOPENTA[B]PYRROL-6(1H)-YLIDENE]-4-METHYL-3, HETNAM 6 RCC 4-DIHYDRO-2H-PYRROL-3-YL}PROPANOIC ACID HETNAM NA SODIUM ION HETSYN RCC RED CHLOROPHYLL CATABOLITE FORMUL 3 RCC C35 H38 N4 O7 FORMUL 4 NA 2(NA 1+) FORMUL 6 HOH *315(H2 O) HELIX 1 1 LYS A 51 PHE A 55 5 5 HELIX 2 2 SER A 59 LEU A 77 1 19 HELIX 3 3 PRO A 87 ARG A 91 1 5 HELIX 4 4 ASN A 178 TYR A 186 1 9 HELIX 5 5 ALA A 190 LYS A 200 1 11 HELIX 6 6 SER A 211 VAL A 218 1 8 HELIX 7 7 GLU A 231 HIS A 242 1 12 HELIX 8 8 HIS A 242 CYS A 258 1 17 HELIX 9 9 GLY A 269 LEU A 292 1 24 HELIX 10 10 GLN A 295 GLY A 301 1 7 HELIX 11 11 GLY A 301 GLY A 317 1 17 HELIX 12 12 SER B 59 LEU B 77 1 19 HELIX 13 13 GLN B 78 LEU B 81 5 4 HELIX 14 14 PRO B 87 ARG B 91 1 5 HELIX 15 15 ASN B 178 TYR B 186 1 9 HELIX 16 16 LEU B 191 LYS B 200 1 10 HELIX 17 17 SER B 211 VAL B 218 1 8 HELIX 18 18 GLU B 231 HIS B 242 1 12 HELIX 19 19 HIS B 242 CYS B 258 1 17 HELIX 20 20 GLY B 269 LEU B 292 1 24 HELIX 21 21 LEU B 294 GLY B 301 1 8 HELIX 22 22 GLY B 301 GLY B 317 1 17 SHEET 1 A 8 ASN A 92 ASN A 94 0 SHEET 2 A 8 ALA A 100 SER A 108 -1 O ALA A 102 N PHE A 93 SHEET 3 A 8 ILE A 115 LYS A 126 -1 O GLY A 120 N HIS A 105 SHEET 4 A 8 SER A 132 LEU A 142 -1 O PHE A 141 N PHE A 117 SHEET 5 A 8 PHE A 151 GLN A 157 -1 O GLN A 157 N ASN A 134 SHEET 6 A 8 SER A 162 ASP A 168 -1 O VAL A 164 N ILE A 156 SHEET 7 A 8 SER A 223 ASP A 228 -1 O ILE A 227 N LEU A 163 SHEET 8 A 8 VAL A 204 PRO A 206 -1 N ASN A 205 O LYS A 226 SHEET 1 B 8 ASN B 92 ASN B 94 0 SHEET 2 B 8 ALA B 100 SER B 108 -1 O ALA B 102 N PHE B 93 SHEET 3 B 8 ILE B 115 LYS B 126 -1 O HIS B 124 N GLU B 101 SHEET 4 B 8 SER B 132 LEU B 142 -1 O PHE B 141 N PHE B 117 SHEET 5 B 8 PHE B 151 GLN B 157 -1 O LEU B 155 N THR B 136 SHEET 6 B 8 SER B 162 ASP B 168 -1 O VAL B 164 N ILE B 156 SHEET 7 B 8 SER B 223 ASP B 228 -1 O ILE B 227 N LEU B 163 SHEET 8 B 8 VAL B 204 PRO B 206 -1 N ASN B 205 O LYS B 226 LINK NA NA A 1 O LEU A 199 1555 1555 2.39 LINK NA NA A 1 O LEU A 201 1555 1555 2.46 LINK NA NA A 1 O VAL A 204 1555 1555 2.29 LINK NA NA A 1 O HOH A 351 1555 1555 2.38 LINK NA NA A 1 O HOH A 365 1555 1555 2.56 LINK NA NA A 1 O HOH A 383 1555 1555 2.31 LINK NA NA B 2 O LEU B 199 1555 1555 2.30 LINK NA NA B 2 O LEU B 201 1555 1555 2.48 LINK NA NA B 2 O VAL B 204 1555 1555 2.39 LINK NA NA B 2 O HOH B 327 1555 1555 2.41 LINK NA NA B 2 O HOH B 328 1555 1555 2.29 LINK NA NA B 2 O HOH B 329 1555 1555 2.32 CISPEP 1 LYS A 265 ILE A 266 0 0.60 SITE 1 AC1 15 SER A 121 ILE A 123 ILE A 135 VAL A 152 SITE 2 AC1 15 GLU A 154 ILE A 156 ILE A 166 TYR A 207 SITE 3 AC1 15 SER A 209 PRO A 210 PHE A 283 SER A 287 SITE 4 AC1 15 ASP A 291 LEU A 292 ILE A 312 SITE 1 AC2 6 LEU A 199 LEU A 201 VAL A 204 HOH A 351 SITE 2 AC2 6 HOH A 365 HOH A 383 SITE 1 AC3 6 LEU B 199 LEU B 201 VAL B 204 HOH B 327 SITE 2 AC3 6 HOH B 328 HOH B 329 CRYST1 45.089 84.321 131.518 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007604 0.00000