HEADER TRANSLATION,TRANSFERASE 06-APR-10 3AGQ TITLE STRUCTURE OF VIRAL POLYMERASE FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR TS, ELONGATION FACTOR TU 1, LINKER, Q COMPND 3 BETA REPLICASE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7, SYNTHETIC CONSTRUCT, SOURCE 3 ESCHERICHIA PHAGE QBETA; SOURCE 4 ORGANISM_TAXID: 83334, 32630, 39803; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD33 KEYWDS RNA POLYMERASE, REPLICASE, TRANSLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.TAKESHITA,K.TOMITA REVDAT 4 01-NOV-23 3AGQ 1 REMARK SEQADV LINK REVDAT 3 28-JUN-17 3AGQ 1 SOURCE REVDAT 2 29-JAN-14 3AGQ 1 JRNL VERSN REVDAT 1 01-SEP-10 3AGQ 0 JRNL AUTH D.TAKESHITA,K.TOMITA JRNL TITL ASSEMBLY OF Q{BETA} VIRAL RNA POLYMERASE WITH HOST JRNL TITL 2 TRANSLATIONAL ELONGATION FACTORS EF-TU AND -TS JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 15733 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20798060 JRNL DOI 10.1073/PNAS.1006559107 REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 28539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.2414 - 3.2213 0.00 0 0 0.4760 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000029232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28658 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3AGP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG400, 0.2M MAGNESIUM ACETATE, REMARK 280 0.1M HEPES, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.48750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.48750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 69.38450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 127.55950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 69.38450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 127.55950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.48750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 69.38450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 127.55950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.48750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 69.38450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 127.55950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 104350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.48750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ILE A 4 REMARK 465 LYS A 287 REMARK 465 GLU A 288 REMARK 465 LYS A 289 REMARK 465 ALA A 327 REMARK 465 ALA A 328 REMARK 465 ARG A 329 REMARK 465 ALA A 330 REMARK 465 PHE A 331 REMARK 465 ASP A 332 REMARK 465 GLN A 333 REMARK 465 ILE A 334 REMARK 465 ASP A 335 REMARK 465 ASN A 336 REMARK 465 ALA A 337 REMARK 465 PRO A 338 REMARK 465 GLU A 339 REMARK 465 GLU A 340 REMARK 465 LYS A 341 REMARK 465 ALA A 342 REMARK 465 ARG A 343 REMARK 465 GLY A 344 REMARK 465 ILE A 345 REMARK 465 THR A 346 REMARK 465 ILE A 347 REMARK 465 ASN A 348 REMARK 465 SER A 681 REMARK 465 GLY A 682 REMARK 465 ALA A 683 REMARK 465 ALA A 684 REMARK 465 GLY A 685 REMARK 465 GLY A 686 REMARK 465 GLY A 687 REMARK 465 GLY A 688 REMARK 465 SER A 689 REMARK 465 GLY A 690 REMARK 465 GLY A 691 REMARK 465 GLY A 692 REMARK 465 GLY A 693 REMARK 465 SER A 694 REMARK 465 MET A 695 REMARK 465 SER A 696 REMARK 465 LYS A 697 REMARK 465 THR A 698 REMARK 465 ALA A 699 REMARK 465 ASP A 1217 REMARK 465 GLY A 1218 REMARK 465 LEU A 1219 REMARK 465 PRO A 1220 REMARK 465 LEU A 1221 REMARK 465 ARG A 1222 REMARK 465 GLY A 1223 REMARK 465 PRO A 1224 REMARK 465 SER A 1225 REMARK 465 GLY A 1226 REMARK 465 CYS A 1227 REMARK 465 ASP A 1228 REMARK 465 SER A 1229 REMARK 465 ALA A 1230 REMARK 465 ASP A 1231 REMARK 465 LEU A 1232 REMARK 465 PHE A 1233 REMARK 465 VAL A 1265 REMARK 465 LEU A 1266 REMARK 465 ALA A 1267 REMARK 465 PRO A 1268 REMARK 465 TYR A 1269 REMARK 465 GLY A 1270 REMARK 465 VAL A 1271 REMARK 465 PHE A 1272 REMARK 465 GLN A 1273 REMARK 465 GLY A 1274 REMARK 465 THR A 1275 REMARK 465 LYS A 1276 REMARK 465 VAL A 1277 REMARK 465 ALA A 1278 REMARK 465 SER A 1279 REMARK 465 LEU A 1280 REMARK 465 HIS A 1281 REMARK 465 GLU A 1282 REMARK 465 ALA A 1283 REMARK 465 HIS A 1284 REMARK 465 HIS A 1285 REMARK 465 HIS A 1286 REMARK 465 HIS A 1287 REMARK 465 HIS A 1288 REMARK 465 HIS A 1289 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 PHE A 290 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 702 CG CD NE CZ NH1 NH2 REMARK 470 ASN A1216 CG OD1 ND2 REMARK 470 ARG A1264 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 286 CA - C - O ANGL. DEV. = -38.5 DEGREES REMARK 500 PRO A 999 C - N - CA ANGL. DEV. = 12.1 DEGREES REMARK 500 PRO A1244 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 7 -7.48 -54.47 REMARK 500 THR A 16 -70.17 -103.55 REMARK 500 ASN A 31 -10.57 56.66 REMARK 500 ARG A 42 -70.55 -51.65 REMARK 500 ALA A 53 11.16 -60.74 REMARK 500 ASP A 59 -153.19 -85.05 REMARK 500 ASN A 69 30.68 -153.50 REMARK 500 CYS A 78 -162.94 -122.59 REMARK 500 ALA A 102 -79.14 -50.07 REMARK 500 GLU A 116 -32.44 -26.68 REMARK 500 ILE A 132 91.93 -60.83 REMARK 500 ARG A 134 141.13 -23.76 REMARK 500 ALA A 150 3.38 173.01 REMARK 500 ASP A 162 -147.38 -91.44 REMARK 500 SER A 176 -16.36 -178.93 REMARK 500 PRO A 183 4.53 -69.04 REMARK 500 SER A 187 102.55 -44.74 REMARK 500 ALA A 188 -7.65 -55.20 REMARK 500 ILE A 201 -32.87 -36.58 REMARK 500 SER A 205 1.11 -55.65 REMARK 500 LYS A 209 -78.89 -6.99 REMARK 500 GLU A 210 -7.45 -54.57 REMARK 500 LEU A 229 -16.94 -44.91 REMARK 500 GLU A 237 63.30 -160.32 REMARK 500 SER A 239 0.63 -66.12 REMARK 500 GLU A 252 144.75 -171.89 REMARK 500 LYS A 267 87.63 41.60 REMARK 500 GLU A 291 74.37 -104.04 REMARK 500 HIS A 296 68.49 -104.16 REMARK 500 SER A 350 67.54 39.33 REMARK 500 CYS A 366 67.59 -115.19 REMARK 500 ALA A 381 101.24 178.34 REMARK 500 GLN A 382 -169.23 -76.28 REMARK 500 LEU A 406 -31.50 -39.00 REMARK 500 ARG A 439 -9.06 -58.93 REMARK 500 PRO A 448 73.73 -57.12 REMARK 500 GLU A 464 32.27 -82.99 REMARK 500 PRO A 494 93.36 -69.47 REMARK 500 PHE A 495 134.28 2.56 REMARK 500 THR A 510 145.06 -30.75 REMARK 500 VAL A 523 114.32 -31.47 REMARK 500 GLU A 534 121.87 -36.21 REMARK 500 SER A 538 -139.83 -167.48 REMARK 500 MET A 545 -168.04 -102.29 REMARK 500 ARG A 547 -79.26 -84.56 REMARK 500 PRO A 606 173.10 -58.39 REMARK 500 PHE A 608 -128.40 -131.36 REMARK 500 ARG A 618 -19.56 52.81 REMARK 500 THR A 619 -8.93 -161.02 REMARK 500 PRO A 637 106.44 -49.27 REMARK 500 REMARK 500 THIS ENTRY HAS 126 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 968 OD2 REMARK 620 2 ASP A1054 OD2 162.5 REMARK 620 3 HOH A2005 O 99.6 86.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AGP RELATED DB: PDB DBREF 3AGQ A 1 283 UNP P0A6P3 EFTS_ECO57 1 283 DBREF 3AGQ A 285 678 UNP P0A6N3 EFTU_ECO57 1 394 DBREF 3AGQ A 679 694 PDB 3AGQ 3AGQ 679 694 DBREF 3AGQ A 695 1283 UNP Q8LTE0 Q8LTE0_BPQBE 1 589 SEQADV 3AGQ HIS A 284 UNP P0A6P3 LINKER SEQADV 3AGQ HIS A 1284 UNP Q8LTE0 EXPRESSION TAG SEQADV 3AGQ HIS A 1285 UNP Q8LTE0 EXPRESSION TAG SEQADV 3AGQ HIS A 1286 UNP Q8LTE0 EXPRESSION TAG SEQADV 3AGQ HIS A 1287 UNP Q8LTE0 EXPRESSION TAG SEQADV 3AGQ HIS A 1288 UNP Q8LTE0 EXPRESSION TAG SEQADV 3AGQ HIS A 1289 UNP Q8LTE0 EXPRESSION TAG SEQRES 1 A 1289 MET ALA GLU ILE THR ALA SER LEU VAL LYS GLU LEU ARG SEQRES 2 A 1289 GLU ARG THR GLY ALA GLY MET MET ASP CYS LYS LYS ALA SEQRES 3 A 1289 LEU THR GLU ALA ASN GLY ASP ILE GLU LEU ALA ILE GLU SEQRES 4 A 1289 ASN MET ARG LYS SER GLY ALA ILE LYS ALA ALA LYS LYS SEQRES 5 A 1289 ALA GLY ASN VAL ALA ALA ASP GLY VAL ILE LYS THR LYS SEQRES 6 A 1289 ILE ASP GLY ASN TYR GLY ILE ILE LEU GLU VAL ASN CYS SEQRES 7 A 1289 GLN THR ASP PHE VAL ALA LYS ASP ALA GLY PHE GLN ALA SEQRES 8 A 1289 PHE ALA ASP LYS VAL LEU ASP ALA ALA VAL ALA GLY LYS SEQRES 9 A 1289 ILE THR ASP VAL GLU VAL LEU LYS ALA GLN PHE GLU GLU SEQRES 10 A 1289 GLU ARG VAL ALA LEU VAL ALA LYS ILE GLY GLU ASN ILE SEQRES 11 A 1289 ASN ILE ARG ARG VAL ALA ALA LEU GLU GLY ASP VAL LEU SEQRES 12 A 1289 GLY SER TYR GLN HIS GLY ALA ARG ILE GLY VAL LEU VAL SEQRES 13 A 1289 ALA ALA LYS GLY ALA ASP GLU GLU LEU VAL LYS HIS ILE SEQRES 14 A 1289 ALA MET HIS VAL ALA ALA SER LYS PRO GLU PHE ILE LYS SEQRES 15 A 1289 PRO GLU ASP VAL SER ALA GLU VAL VAL GLU LYS GLU TYR SEQRES 16 A 1289 GLN VAL GLN LEU ASP ILE ALA MET GLN SER GLY LYS PRO SEQRES 17 A 1289 LYS GLU ILE ALA GLU LYS MET VAL GLU GLY ARG MET LYS SEQRES 18 A 1289 LYS PHE THR GLY GLU VAL SER LEU THR GLY GLN PRO PHE SEQRES 19 A 1289 VAL MET GLU PRO SER LYS THR VAL GLY GLN LEU LEU LYS SEQRES 20 A 1289 GLU HIS ASN ALA GLU VAL THR GLY PHE ILE ARG PHE GLU SEQRES 21 A 1289 VAL GLY GLU GLY ILE GLU LYS VAL GLU THR ASP PHE ALA SEQRES 22 A 1289 ALA GLU VAL ALA ALA MET SER LYS GLN SER HIS MET SER SEQRES 23 A 1289 LYS GLU LYS PHE GLU ARG THR LYS PRO HIS VAL ASN VAL SEQRES 24 A 1289 GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR LEU SEQRES 25 A 1289 THR ALA ALA ILE THR THR VAL LEU ALA LYS THR TYR GLY SEQRES 26 A 1289 GLY ALA ALA ARG ALA PHE ASP GLN ILE ASP ASN ALA PRO SEQRES 27 A 1289 GLU GLU LYS ALA ARG GLY ILE THR ILE ASN THR SER HIS SEQRES 28 A 1289 VAL GLU TYR ASP THR PRO THR ARG HIS TYR ALA HIS VAL SEQRES 29 A 1289 ASP CYS PRO GLY HIS ALA ASP TYR VAL LYS ASN MET ILE SEQRES 30 A 1289 THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU VAL VAL SEQRES 31 A 1289 ALA ALA THR ASP GLY PRO MET PRO GLN THR ARG GLU HIS SEQRES 32 A 1289 ILE LEU LEU GLY ARG GLN VAL GLY VAL PRO TYR ILE ILE SEQRES 33 A 1289 VAL PHE LEU ASN LYS CYS ASP MET VAL ASP ASP GLU GLU SEQRES 34 A 1289 LEU LEU GLU LEU VAL GLU MET GLU VAL ARG GLU LEU LEU SEQRES 35 A 1289 SER GLN TYR ASP PHE PRO GLY ASP ASP THR PRO ILE VAL SEQRES 36 A 1289 ARG GLY SER ALA LEU LYS ALA LEU GLU GLY ASP ALA GLU SEQRES 37 A 1289 TRP GLU ALA LYS ILE LEU GLU LEU ALA GLY PHE LEU ASP SEQRES 38 A 1289 SER TYR ILE PRO GLU PRO GLU ARG ALA ILE ASP LYS PRO SEQRES 39 A 1289 PHE LEU LEU PRO ILE GLU ASP VAL PHE SER ILE SER GLY SEQRES 40 A 1289 ARG GLY THR VAL VAL THR GLY ARG VAL GLU ARG GLY ILE SEQRES 41 A 1289 ILE LYS VAL GLY GLU GLU VAL GLU ILE VAL GLY ILE LYS SEQRES 42 A 1289 GLU THR GLN LYS SER THR CYS THR GLY VAL GLU MET PHE SEQRES 43 A 1289 ARG LYS LEU LEU ASP GLU GLY ARG ALA GLY GLU ASN VAL SEQRES 44 A 1289 GLY VAL LEU LEU ARG GLY ILE LYS ARG GLU GLU ILE GLU SEQRES 45 A 1289 ARG GLY GLN VAL LEU ALA LYS PRO GLY THR ILE LYS PRO SEQRES 46 A 1289 HIS THR LYS PHE GLU SER GLU VAL TYR ILE LEU SER LYS SEQRES 47 A 1289 ASP GLU GLY GLY ARG HIS THR PRO PHE PHE LYS GLY TYR SEQRES 48 A 1289 ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR GLY SEQRES 49 A 1289 THR ILE GLU LEU PRO GLU GLY VAL GLU MET VAL MET PRO SEQRES 50 A 1289 GLY ASP ASN ILE LYS MET VAL VAL THR LEU ILE HIS PRO SEQRES 51 A 1289 ILE ALA MET ASP ASP GLY LEU ARG PHE ALA ILE ARG GLU SEQRES 52 A 1289 GLY GLY ARG THR VAL GLY ALA GLY VAL VAL ALA LYS VAL SEQRES 53 A 1289 LEU SER GLY ALA SER GLY ALA ALA GLY GLY GLY GLY SER SEQRES 54 A 1289 GLY GLY GLY GLY SER MET SER LYS THR ALA SER SER ARG SEQRES 55 A 1289 ASN SER LEU SER ALA GLN LEU ARG ARG ALA ALA ASN THR SEQRES 56 A 1289 ARG ILE GLU VAL GLU GLY ASN LEU ALA LEU SER ILE ALA SEQRES 57 A 1289 ASN ASP LEU LEU LEU ALA TYR GLY GLN SER PRO PHE ASN SEQRES 58 A 1289 SER GLU ALA GLU CYS ILE SER PHE SER PRO ARG PHE ASP SEQRES 59 A 1289 GLY THR PRO ASP ASP PHE ARG ILE ASN TYR LEU LYS ALA SEQRES 60 A 1289 GLU ILE MET SER LYS TYR ASP ASP PHE SER LEU GLY ILE SEQRES 61 A 1289 ASP THR GLU ALA VAL ALA TRP GLU LYS PHE LEU ALA ALA SEQRES 62 A 1289 GLU ALA GLU CYS ALA LEU THR ASN ALA ARG LEU TYR ARG SEQRES 63 A 1289 PRO ASP TYR SER GLU ASP PHE ASN PHE SER LEU GLY GLU SEQRES 64 A 1289 SER CYS ILE HIS MET ALA ARG ARG LYS ILE ALA LYS LEU SEQRES 65 A 1289 ILE GLY ASP VAL PRO SER VAL GLU GLY MET LEU ARG HIS SEQRES 66 A 1289 CYS ARG PHE SER GLY GLY ALA THR THR THR ASN ASN ARG SEQRES 67 A 1289 SER TYR GLY HIS PRO SER PHE LYS PHE ALA LEU PRO GLN SEQRES 68 A 1289 ALA CYS THR PRO ARG ALA LEU LYS TYR VAL LEU ALA LEU SEQRES 69 A 1289 ARG ALA SER THR HIS PHE ASP ILE ARG ILE SER ASP ILE SEQRES 70 A 1289 SER PRO PHE ASN LYS ALA VAL THR VAL PRO LYS ASN SER SEQRES 71 A 1289 LYS THR ASP ARG CYS ILE ALA ILE GLU PRO GLY TRP ASN SEQRES 72 A 1289 MET PHE PHE GLN LEU GLY ILE GLY GLY ILE LEU ARG ASP SEQRES 73 A 1289 ARG LEU ARG CYS TRP GLY ILE ASP LEU ASN ASP GLN THR SEQRES 74 A 1289 ILE ASN GLN ARG ARG ALA HIS GLU GLY SER VAL THR ASN SEQRES 75 A 1289 ASN LEU ALA THR VAL ASP LEU SER ALA ALA SER ASP SER SEQRES 76 A 1289 ILE SER LEU ALA LEU CYS GLU LEU LEU LEU PRO PRO GLY SEQRES 77 A 1289 TRP PHE GLU VAL LEU MET ASP LEU ARG SER PRO LYS GLY SEQRES 78 A 1289 ARG LEU PRO ASP GLY SER VAL VAL THR TYR GLU LYS ILE SEQRES 79 A 1289 SER SER MET GLY ASN GLY TYR THR PHE GLU LEU GLU SER SEQRES 80 A 1289 LEU ILE PHE ALA SER LEU ALA ARG SER VAL CYS GLU ILE SEQRES 81 A 1289 LEU ASP LEU ASP SER SER GLU VAL THR VAL TYR GLY ASP SEQRES 82 A 1289 ASP ILE ILE LEU PRO SER CYS ALA VAL PRO ALA LEU ARG SEQRES 83 A 1289 GLU VAL PHE LYS TYR VAL GLY PHE THR THR ASN THR LYS SEQRES 84 A 1289 LYS THR PHE SER GLU GLY PRO PHE ARG GLU SER CYS GLY SEQRES 85 A 1289 LYS HIS TYR TYR SER GLY VAL ASP VAL THR PRO PHE TYR SEQRES 86 A 1289 ILE ARG HIS ARG ILE VAL SER PRO ALA ASP LEU ILE LEU SEQRES 87 A 1289 VAL LEU ASN ASN LEU TYR ARG TRP ALA THR ILE ASP GLY SEQRES 88 A 1289 VAL TRP ASP PRO ARG ALA HIS SER VAL TYR LEU LYS TYR SEQRES 89 A 1289 ARG LYS LEU LEU PRO LYS GLN LEU GLN ARG ASN THR ILE SEQRES 90 A 1289 PRO ASP GLY TYR GLY ASP GLY ALA LEU VAL GLY SER VAL SEQRES 91 A 1289 LEU ILE ASN PRO PHE ALA LYS ASN ARG GLY TRP ILE ARG SEQRES 92 A 1289 TYR VAL PRO VAL ILE THR ASP HIS THR ARG ASP ARG GLU SEQRES 93 A 1289 ARG ALA GLU LEU GLY SER TYR LEU TYR ASP LEU PHE SER SEQRES 94 A 1289 ARG CYS LEU SER GLU SER ASN ASP GLY LEU PRO LEU ARG SEQRES 95 A 1289 GLY PRO SER GLY CYS ASP SER ALA ASP LEU PHE ALA ILE SEQRES 96 A 1289 ASP GLN LEU ILE CYS ARG SER ASN PRO THR LYS ILE SER SEQRES 97 A 1289 ARG SER THR GLY LYS PHE ASP ILE GLN TYR ILE ALA CYS SEQRES 98 A 1289 SER SER ARG VAL LEU ALA PRO TYR GLY VAL PHE GLN GLY SEQRES 99 A 1289 THR LYS VAL ALA SER LEU HIS GLU ALA HIS HIS HIS HIS SEQRES 100 A 1289 HIS HIS HET MG A2001 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *4(H2 O) HELIX 1 1 LEU A 12 GLY A 17 1 6 HELIX 2 2 ASP A 33 SER A 44 1 12 HELIX 3 3 GLY A 45 ALA A 53 1 9 HELIX 4 4 THR A 80 LYS A 85 1 6 HELIX 5 5 ASP A 86 ALA A 102 1 17 HELIX 6 6 VAL A 108 PHE A 115 1 8 HELIX 7 7 PHE A 115 ALA A 124 1 10 HELIX 8 8 ASP A 162 ALA A 175 1 14 HELIX 9 9 VAL A 197 ALA A 202 1 6 HELIX 10 10 PRO A 208 VAL A 227 1 20 HELIX 11 11 THR A 241 HIS A 249 1 9 HELIX 12 12 ASP A 271 ALA A 278 1 8 HELIX 13 13 GLN A 282 SER A 286 5 5 HELIX 14 14 GLY A 308 LEU A 320 1 13 HELIX 15 15 GLY A 368 THR A 378 1 11 HELIX 16 16 MET A 397 GLN A 399 5 3 HELIX 17 17 THR A 400 VAL A 410 1 11 HELIX 18 18 LEU A 430 LEU A 442 1 13 HELIX 19 19 SER A 443 ASP A 446 5 4 HELIX 20 20 ASP A 466 TYR A 483 1 18 HELIX 21 21 ARG A 489 LYS A 493 5 5 HELIX 22 22 LEU A 705 THR A 715 1 11 HELIX 23 23 ASN A 722 TYR A 735 1 14 HELIX 24 24 THR A 756 ILE A 769 1 14 HELIX 25 25 GLU A 783 LEU A 804 1 22 HELIX 26 26 SER A 816 GLY A 834 1 19 HELIX 27 27 GLY A 841 CYS A 846 1 6 HELIX 28 28 ASN A 857 HIS A 862 5 6 HELIX 29 29 PRO A 863 ALA A 868 1 6 HELIX 30 30 ALA A 877 ALA A 886 1 10 HELIX 31 31 PRO A 920 LEU A 938 1 19 HELIX 32 32 ARG A 939 GLY A 942 5 4 HELIX 33 33 GLN A 948 ASN A 962 1 15 HELIX 34 34 SER A 977 LEU A 985 1 9 HELIX 35 35 PRO A 986 ARG A 997 1 12 HELIX 36 36 TYR A 1021 LEU A 1041 1 21 HELIX 37 37 ASP A 1044 VAL A 1048 5 5 HELIX 38 38 ALA A 1061 GLY A 1073 1 13 HELIX 39 39 SER A 1112 TRP A 1126 1 15 HELIX 40 40 ASP A 1134 ARG A 1145 1 12 HELIX 41 41 LYS A 1146 PRO A 1149 5 4 HELIX 42 42 LYS A 1150 ASN A 1155 1 6 HELIX 43 43 LEU A 1200 SER A 1215 1 16 HELIX 44 44 ASP A 1236 CYS A 1240 5 5 SHEET 1 A 3 GLY A 60 ASP A 67 0 SHEET 2 A 3 TYR A 70 ASN A 77 -1 O TYR A 70 N ASP A 67 SHEET 3 A 3 ILE A 132 GLU A 139 -1 O LEU A 138 N GLY A 71 SHEET 1 B 3 LEU A 143 GLN A 147 0 SHEET 2 B 3 ILE A 152 ALA A 157 -1 O VAL A 156 N GLY A 144 SHEET 3 B 3 GLY A 255 GLU A 260 -1 O ILE A 257 N LEU A 155 SHEET 1 C 5 VAL A 352 ASP A 355 0 SHEET 2 C 5 HIS A 360 ASP A 365 -1 O HIS A 363 N VAL A 352 SHEET 3 C 5 ASN A 298 GLY A 303 1 N THR A 301 O VAL A 364 SHEET 4 C 5 GLY A 385 ALA A 391 1 O VAL A 389 N ILE A 302 SHEET 5 C 5 TYR A 414 ILE A 415 1 O TYR A 414 N ALA A 386 SHEET 1 D 6 VAL A 352 ASP A 355 0 SHEET 2 D 6 HIS A 360 ASP A 365 -1 O HIS A 363 N VAL A 352 SHEET 3 D 6 ASN A 298 GLY A 303 1 N THR A 301 O VAL A 364 SHEET 4 D 6 GLY A 385 ALA A 391 1 O VAL A 389 N ILE A 302 SHEET 5 D 6 VAL A 417 ASN A 420 1 O ASN A 420 N VAL A 390 SHEET 6 D 6 ILE A 454 ARG A 456 1 O VAL A 455 N LEU A 419 SHEET 1 E 4 LEU A 496 PRO A 498 0 SHEET 2 E 4 VAL A 576 ALA A 578 -1 O LEU A 577 N LEU A 497 SHEET 3 E 4 GLU A 528 VAL A 530 -1 N VAL A 530 O VAL A 576 SHEET 4 E 4 GLN A 536 LYS A 537 -1 O GLN A 536 N ILE A 529 SHEET 1 F 5 ASP A 501 PHE A 503 0 SHEET 2 F 5 VAL A 511 THR A 513 -1 O VAL A 511 N PHE A 503 SHEET 3 F 5 GLY A 560 LEU A 563 -1 O VAL A 561 N VAL A 512 SHEET 4 F 5 CYS A 540 GLU A 544 -1 N THR A 541 O LEU A 562 SHEET 5 F 5 LEU A 549 LEU A 550 -1 O LEU A 550 N VAL A 543 SHEET 1 G 2 ILE A 520 LYS A 522 0 SHEET 2 G 2 GLU A 552 ARG A 554 -1 O GLY A 553 N ILE A 521 SHEET 1 H 6 GLN A 614 TYR A 616 0 SHEET 2 H 6 ARG A 658 GLU A 663 -1 O ALA A 660 N TYR A 616 SHEET 3 H 6 ARG A 666 LYS A 675 -1 O ARG A 666 N GLU A 663 SHEET 4 H 6 LYS A 584 ILE A 595 -1 N GLU A 590 O LYS A 675 SHEET 5 H 6 ASN A 640 MET A 653 -1 O MET A 643 N SER A 591 SHEET 6 H 6 GLY A 624 GLU A 627 -1 N THR A 625 O THR A 646 SHEET 1 I 4 ASP A 913 ILE A 918 0 SHEET 2 I 4 PHE A 900 PRO A 907 -1 N LYS A 902 O ILE A 918 SHEET 3 I 4 LYS A1000 ARG A1002 1 O ARG A1002 N ASN A 901 SHEET 4 I 4 VAL A1008 THR A1010 -1 O VAL A1009 N GLY A1001 SHEET 1 J 3 LEU A 964 ASP A 968 0 SHEET 2 J 3 ASP A1054 PRO A1058 -1 O ILE A1055 N VAL A 967 SHEET 3 J 3 THR A1049 TYR A1051 -1 N THR A1049 O ILE A1056 SHEET 1 K 3 PHE A1087 SER A1090 0 SHEET 2 K 3 LYS A1093 TYR A1096 -1 O LYS A1093 N SER A1090 SHEET 3 K 3 VAL A1099 ASP A1100 -1 O VAL A1099 N TYR A1096 SHEET 1 L 2 THR A1156 ILE A1157 0 SHEET 2 L 2 LEU A1166 VAL A1167 1 O LEU A1166 N ILE A1157 SHEET 1 M 2 LYS A1177 ARG A1179 0 SHEET 2 M 2 ILE A1182 TYR A1184 -1 O ILE A1182 N ARG A1179 SHEET 1 N 2 PRO A1186 ARG A1195 0 SHEET 2 N 2 ILE A1247 TYR A1258 -1 O GLN A1257 N VAL A1187 LINK OD2 ASP A 968 MG MG A2001 1555 1555 2.73 LINK OD2 ASP A1054 MG MG A2001 1555 1555 2.98 LINK MG MG A2001 O HOH A2005 1555 1555 2.74 SITE 1 AC1 3 ASP A 968 ASP A1054 HOH A2005 CRYST1 138.769 255.119 100.975 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009903 0.00000