HEADER LYASE 22-APR-10 3AHC TITLE RESTING FORM OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLULOSE 5-PHOSPHATE/FRUCTOSE 6-PHOSPHATE PHOSPHOKETOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOKETOLASE; COMPND 5 EC: 4.1.2.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM BREVE; SOURCE 3 ORGANISM_TAXID: 1685; SOURCE 4 STRAIN: 203; SOURCE 5 GENE: XFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS THIAMINE DIPHOSPHATE-DEPENDENT ENZYME, ALPHA-BETA FOLD, HOMODIMER, KEYWDS 2 LIGAND-FREE STRUCTURE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SUZUKI,T.KATAYAMA,B.-J.KIM,T.WAKAGI,H.SHOUN,H.ASHIDA,K.YAMAMOTO, AUTHOR 2 S.FUSHINOBU REVDAT 3 13-MAR-24 3AHC 1 REMARK SEQADV LINK REVDAT 2 03-NOV-10 3AHC 1 JRNL REVDAT 1 25-AUG-10 3AHC 0 JRNL AUTH R.SUZUKI,T.KATAYAMA,B.-J.KIM,T.WAKAGI,H.SHOUN,H.ASHIDA, JRNL AUTH 2 K.YAMAMOTO,S.FUSHINOBU JRNL TITL CRYSTAL STRUCTURES OF PHOSPHOKETOLASE: THIAMINE JRNL TITL 2 DIPHOSPHATE-DEPENDENT DEHYDRATION MECHANISM JRNL REF J.BIOL.CHEM. V. 285 34279 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20739284 JRNL DOI 10.1074/JBC.M110.156281 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.SUZUKI,B.-J.KIM,T.SHIBATA,Y.IWAMOTO,T.KATAYAMA,H.ASHIDA, REMARK 1 AUTH 2 T.WAKAGI,H.SHOUN,S.FUSHINOBU,K.YAMAMOTO REMARK 1 TITL OVEREXPRESSION, CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 ANALYSIS OF XYLULOSE-5-PHOSPHATE/FRUCTOSE-6-PHOSPHATE REMARK 1 TITL 3 PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 66 941 2010 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 20693675 REMARK 1 DOI 10.1107/S1744309110023845 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 130627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6904 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9534 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 515 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 886 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.378 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6647 ; 0.037 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8997 ; 2.722 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 801 ; 6.660 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 334 ;37.440 ;24.551 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1044 ;12.538 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.099 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 942 ; 0.241 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5160 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3993 ; 1.454 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6432 ; 2.131 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2654 ; 3.442 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2565 ; 5.189 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000029254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 137538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.90 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 49.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24%(V/V) PEG 6000, 0.1M BICINE BUFFER, REMARK 280 PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 87.38300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 87.38300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 81.91950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 87.38300 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 87.38300 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 81.91950 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 87.38300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 87.38300 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 81.91950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 87.38300 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 87.38300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 81.91950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 87.38300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 87.38300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 81.91950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 87.38300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 87.38300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 81.91950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 87.38300 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 87.38300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 81.91950 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 87.38300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 87.38300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 81.91950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 807 REMARK 465 VAL A 808 REMARK 465 ASP A 809 REMARK 465 GLU A 810 REMARK 465 THR A 811 REMARK 465 GLN A 812 REMARK 465 MET A 813 REMARK 465 LEU A 814 REMARK 465 SER A 815 REMARK 465 ALA A 816 REMARK 465 THR A 817 REMARK 465 ALA A 818 REMARK 465 ALA A 819 REMARK 465 THR A 820 REMARK 465 ALA A 821 REMARK 465 GLY A 822 REMARK 465 ASP A 823 REMARK 465 ASN A 824 REMARK 465 GLU A 825 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 273 O HOH A 1347 2.02 REMARK 500 NH1 ARG A 60 O HOH A 1398 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 5 N VAL A 5 CA 0.151 REMARK 500 VAL A 5 CB VAL A 5 CG1 0.129 REMARK 500 GLU A 20 CG GLU A 20 CD 0.108 REMARK 500 GLU A 20 CD GLU A 20 OE1 0.066 REMARK 500 TYR A 34 CG TYR A 34 CD2 0.082 REMARK 500 SER A 134 CB SER A 134 OG -0.108 REMARK 500 TYR A 135 CD1 TYR A 135 CE1 0.117 REMARK 500 TYR A 135 CE1 TYR A 135 CZ 0.078 REMARK 500 GLU A 265 CG GLU A 265 CD 0.099 REMARK 500 GLU A 410 CG GLU A 410 CD 0.093 REMARK 500 GLU A 525 CD GLU A 525 OE1 0.077 REMARK 500 LYS A 597 CB LYS A 597 CG 0.188 REMARK 500 GLU A 622 CB GLU A 622 CG 0.127 REMARK 500 GLU A 622 CG GLU A 622 CD 0.136 REMARK 500 ALA A 631 CA ALA A 631 CB 0.149 REMARK 500 GLU A 654 CD GLU A 654 OE1 0.069 REMARK 500 VAL A 672 CB VAL A 672 CG2 0.137 REMARK 500 GLU A 693 CG GLU A 693 CD 0.096 REMARK 500 PHE A 695 CZ PHE A 695 CE2 0.117 REMARK 500 ALA A 701 CA ALA A 701 CB 0.147 REMARK 500 SER A 739 CB SER A 739 OG 0.140 REMARK 500 ARG A 754 CD ARG A 754 NE -0.158 REMARK 500 TYR A 755 CE1 TYR A 755 CZ 0.084 REMARK 500 ALA A 779 CA ALA A 779 CB 0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 43 CD - NE - CZ ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG A 60 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 60 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TYR A 135 CD1 - CE1 - CZ ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 227 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 230 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 238 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET A 286 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG A 318 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 370 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 385 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 LEU A 391 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP A 436 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 494 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 529 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 618 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 618 NE - CZ - NH1 ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 618 NE - CZ - NH2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP A 727 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 745 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 MET A 746 CG - SD - CE ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG A 754 CB - CG - CD ANGL. DEV. = -21.1 DEGREES REMARK 500 ARG A 754 CG - CD - NE ANGL. DEV. = -15.6 DEGREES REMARK 500 ARG A 754 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 754 NE - CZ - NH2 ANGL. DEV. = -12.4 DEGREES REMARK 500 LYS A 763 CD - CE - NZ ANGL. DEV. = 17.4 DEGREES REMARK 500 ASP A 766 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 775 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 781 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 790 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 152 111.05 -167.77 REMARK 500 LYS A 218 -137.59 -115.56 REMARK 500 ALA A 220 27.32 -146.29 REMARK 500 TRP A 302 121.88 -28.54 REMARK 500 THR A 303 -8.45 94.41 REMARK 500 GLN A 321 -105.39 -106.98 REMARK 500 ASP A 455 65.15 -111.99 REMARK 500 SER A 478 109.59 -166.68 REMARK 500 ARG A 494 -158.70 -112.74 REMARK 500 GLU A 525 15.37 -148.63 REMARK 500 ARG A 545 56.71 -141.99 REMARK 500 ASP A 555 92.77 -161.33 REMARK 500 ASP A 687 2.13 -69.12 REMARK 500 THR A 700 162.34 68.59 REMARK 500 ASP A 702 19.57 -154.12 REMARK 500 SER A 711 -152.41 -106.74 REMARK 500 SER A 739 -154.28 -166.27 REMARK 500 ASP A 766 92.64 -165.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 826 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 182 OD1 REMARK 620 2 ASN A 215 OD1 92.3 REMARK 620 3 TYR A 217 O 99.6 91.4 REMARK 620 4 TPP A 827 O1B 170.2 95.1 86.6 REMARK 620 5 TPP A 827 O2A 87.2 178.1 90.5 85.3 REMARK 620 6 HOH A1294 O 83.5 87.3 176.7 90.4 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 828 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 726 NE2 REMARK 620 2 ASP A 727 OD1 96.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 826 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPP A 827 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 828 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 829 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 830 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 831 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 832 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 833 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 834 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 835 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 836 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 837 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 838 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 839 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE A 840 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AHD RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH 2-ACETYL-THIAMINE DIPHOSPHATE REMARK 900 RELATED ID: 3AHE RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DIHYDROXYETHYL THIAMINE DIPHOSPHATE REMARK 900 RELATED ID: 3AHF RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH INORGANIC PHOSPHATE REMARK 900 RELATED ID: 3AHG RELATED DB: PDB REMARK 900 H64A MUTATION OF THE SAME PROTEIN COMPLEXED WITH REMARK 900 DIHYDROTHIACHROMINE FORM OF THIAMINE DIPHOSPHATE REMARK 900 RELATED ID: 3AHH RELATED DB: PDB REMARK 900 H142A MUTATION OF THE SAME PROTEIN COMPLEXED WITH ACETYL THIAMINE REMARK 900 DIPHOSPHATE REMARK 900 RELATED ID: 3AHI RELATED DB: PDB REMARK 900 H320A MUTATION OF THE SAME PROTEIN COMPLEXED WITH ACETYL THIAMINE REMARK 900 DIPHOSPHATE REMARK 900 RELATED ID: 3AHJ RELATED DB: PDB REMARK 900 H553A MUTATION OF THE SAME PROTEIN DBREF 3AHC A 1 825 UNP D6PAH1 D6PAH1_BIFBR 1 825 SEQADV 3AHC MET A -19 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC GLY A -18 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC SER A -17 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC SER A -16 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC HIS A -15 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC HIS A -14 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC HIS A -13 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC HIS A -12 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC HIS A -11 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC HIS A -10 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC SER A -9 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC SER A -8 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC GLY A -7 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC LEU A -6 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC VAL A -5 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC PRO A -4 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC ARG A -3 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC GLY A -2 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC SER A -1 UNP D6PAH1 EXPRESSION TAG SEQADV 3AHC HIS A 0 UNP D6PAH1 EXPRESSION TAG SEQRES 1 A 845 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 845 LEU VAL PRO ARG GLY SER HIS MET THR ASN PRO VAL ILE SEQRES 3 A 845 GLY THR PRO TRP GLN LYS LEU ASP ARG PRO VAL SER GLU SEQRES 4 A 845 GLU ALA ILE GLU GLY MET ASP LYS TYR TRP ARG VAL THR SEQRES 5 A 845 ASN TYR MET SER ILE GLY GLN ILE TYR LEU ARG SER ASN SEQRES 6 A 845 PRO LEU MET LYS GLU PRO PHE THR ARG ASP ASP VAL LYS SEQRES 7 A 845 HIS ARG LEU VAL GLY HIS TRP GLY THR THR PRO GLY LEU SEQRES 8 A 845 ASN PHE LEU LEU ALA HIS ILE ASN ARG LEU ILE ALA ASP SEQRES 9 A 845 HIS GLN GLN ASN THR VAL PHE ILE MET GLY PRO GLY HIS SEQRES 10 A 845 GLY GLY PRO ALA GLY THR SER GLN SER TYR VAL ASP GLY SEQRES 11 A 845 THR TYR THR GLU TYR TYR PRO ASN ILE THR LYS ASP GLU SEQRES 12 A 845 ALA GLY LEU GLN LYS PHE PHE ARG GLN PHE SER TYR PRO SEQRES 13 A 845 GLY GLY ILE PRO SER HIS PHE ALA PRO GLU THR PRO GLY SEQRES 14 A 845 SER ILE HIS GLU GLY GLY GLU LEU GLY TYR ALA LEU SER SEQRES 15 A 845 HIS ALA TYR GLY ALA VAL MET ASN ASN PRO SER LEU PHE SEQRES 16 A 845 VAL PRO CYS ILE ILE GLY ASP GLY GLU ALA GLU THR GLY SEQRES 17 A 845 PRO LEU ALA THR GLY TRP GLN SER ASN LYS LEU VAL ASN SEQRES 18 A 845 PRO ARG THR ASP GLY ILE VAL LEU PRO ILE LEU HIS LEU SEQRES 19 A 845 ASN GLY TYR LYS ILE ALA ASN PRO THR ILE LEU ALA ARG SEQRES 20 A 845 ILE SER ASP GLU GLU LEU HIS ASP PHE PHE ARG GLY MET SEQRES 21 A 845 GLY TYR HIS PRO TYR GLU PHE VAL ALA GLY PHE ASP ASN SEQRES 22 A 845 GLU ASP HIS MET SER ILE HIS ARG ARG PHE ALA GLU LEU SEQRES 23 A 845 PHE GLU THR ILE PHE ASP GLU ILE CYS ASP ILE LYS ALA SEQRES 24 A 845 ALA ALA GLN THR ASP ASP MET THR ARG PRO PHE TYR PRO SEQRES 25 A 845 MET LEU ILE PHE ARG THR PRO LYS GLY TRP THR CYS PRO SEQRES 26 A 845 LYS PHE ILE ASP GLY LYS LYS THR GLU GLY SER TRP ARG SEQRES 27 A 845 ALA HIS GLN VAL PRO LEU ALA SER ALA ARG ASP THR GLU SEQRES 28 A 845 GLU HIS PHE GLU VAL LEU LYS GLY TRP MET GLU SER TYR SEQRES 29 A 845 LYS PRO GLU GLU LEU PHE ASN ALA ASP GLY SER ILE LYS SEQRES 30 A 845 ASP ASP VAL THR ALA PHE MET PRO LYS GLY GLU LEU ARG SEQRES 31 A 845 ILE GLY ALA ASN PRO ASN ALA ASN GLY GLY VAL ILE ARG SEQRES 32 A 845 GLU ASP LEU LYS LEU PRO GLU LEU ASP GLN TYR GLU VAL SEQRES 33 A 845 THR GLY VAL LYS GLU TYR GLY HIS GLY TRP GLY GLN VAL SEQRES 34 A 845 GLU ALA PRO ARG ALA LEU GLY ALA TYR CYS ARG ASP ILE SEQRES 35 A 845 ILE LYS ASN ASN PRO ASP SER PHE ARG ILE PHE GLY PRO SEQRES 36 A 845 ASP GLU THR ALA SER ASN ARG LEU ASN ALA THR TYR GLU SEQRES 37 A 845 VAL THR ASP LYS GLN TRP ASP ASN GLY TYR LEU SER GLY SEQRES 38 A 845 LEU VAL ASP GLU HIS MET ALA VAL THR GLY GLN VAL THR SEQRES 39 A 845 GLU GLN LEU SER GLU HIS GLN CYS GLU GLY PHE LEU GLU SEQRES 40 A 845 ALA TYR LEU LEU THR GLY ARG HIS GLY ILE TRP SER SER SEQRES 41 A 845 TYR GLU SER PHE VAL HIS VAL ILE ASP SER MET LEU ASN SEQRES 42 A 845 GLN HIS ALA LYS TRP LEU GLU ALA THR VAL ARG GLU ILE SEQRES 43 A 845 PRO TRP ARG LYS PRO ILE SER SER VAL ASN LEU LEU VAL SEQRES 44 A 845 SER SER HIS VAL TRP ARG GLN ASP HIS ASN GLY PHE SER SEQRES 45 A 845 HIS GLN ASP PRO GLY VAL THR SER LEU LEU ILE ASN LYS SEQRES 46 A 845 THR PHE ASN ASN ASP HIS VAL THR ASN ILE TYR PHE ALA SEQRES 47 A 845 THR ASP ALA ASN MET LEU LEU ALA ILE SER GLU LYS CYS SEQRES 48 A 845 PHE LYS SER THR ASN LYS ILE ASN ALA ILE PHE ALA GLY SEQRES 49 A 845 LYS GLN PRO ALA PRO THR TRP VAL THR LEU ASP GLU ALA SEQRES 50 A 845 ARG ALA GLU LEU GLU ALA GLY ALA ALA GLU TRP LYS TRP SEQRES 51 A 845 ALA SER ASN ALA GLU ASN ASN ASP GLU VAL GLN VAL VAL SEQRES 52 A 845 LEU ALA SER ALA GLY ASP VAL PRO THR GLN GLU LEU MET SEQRES 53 A 845 ALA ALA SER ASP ALA LEU ASN LYS MET GLY ILE LYS PHE SEQRES 54 A 845 LYS VAL VAL ASN VAL VAL ASP LEU LEU LYS LEU GLN SER SEQRES 55 A 845 ARG GLU ASN ASN ASP GLU ALA LEU THR ASP GLU GLU PHE SEQRES 56 A 845 THR GLU LEU PHE THR ALA ASP LYS PRO VAL LEU PHE ALA SEQRES 57 A 845 TYR HIS SER TYR ALA GLN ASP VAL ARG GLY LEU ILE TYR SEQRES 58 A 845 ASP ARG PRO ASN HIS ASP ASN PHE HIS VAL VAL GLY TYR SEQRES 59 A 845 LYS GLU GLN GLY SER THR THR THR PRO PHE ASP MET VAL SEQRES 60 A 845 ARG VAL ASN ASP MET ASP ARG TYR ALA LEU GLN ALA ALA SEQRES 61 A 845 ALA LEU LYS LEU ILE ASP ALA ASP LYS TYR ALA ASP LYS SEQRES 62 A 845 ILE ASP GLU LEU ASN ALA PHE ARG LYS LYS ALA PHE GLN SEQRES 63 A 845 PHE ALA VAL ASP ASN GLY TYR ASP ILE PRO GLU PHE THR SEQRES 64 A 845 ASP TRP VAL TYR PRO ASP VAL LYS VAL ASP GLU THR GLN SEQRES 65 A 845 MET LEU SER ALA THR ALA ALA THR ALA GLY ASP ASN GLU HET MG A 826 1 HET TPP A 827 26 HET NA A 828 1 HET EDO A 829 4 HET EDO A 830 4 HET EDO A 831 4 HET EDO A 832 4 HET EDO A 833 4 HET EDO A 834 4 HET EDO A 835 4 HET EDO A 836 4 HET EDO A 837 4 HET EDO A 838 4 HET EDO A 839 4 HET 2PE A 840 28 HETNAM MG MAGNESIUM ION HETNAM TPP THIAMINE DIPHOSPHATE HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM 2PE NONAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG MG 2+ FORMUL 3 TPP C12 H19 N4 O7 P2 S 1+ FORMUL 4 NA NA 1+ FORMUL 5 EDO 11(C2 H6 O2) FORMUL 16 2PE C18 H38 O10 FORMUL 17 HOH *886(H2 O) HELIX 1 1 SER A 18 LEU A 42 1 25 HELIX 2 2 THR A 53 VAL A 57 5 5 HELIX 3 3 THR A 67 GLN A 86 1 20 HELIX 4 4 PRO A 95 HIS A 97 5 3 HELIX 5 5 GLY A 98 GLY A 110 1 13 HELIX 6 6 GLY A 110 TYR A 116 1 7 HELIX 7 7 ASP A 122 PHE A 133 1 12 HELIX 8 8 TYR A 159 MET A 169 1 11 HELIX 9 9 GLY A 183 GLU A 186 5 4 HELIX 10 10 THR A 187 TRP A 194 1 8 HELIX 11 11 GLN A 195 LEU A 199 5 5 HELIX 12 12 THR A 223 ILE A 228 1 6 HELIX 13 13 SER A 229 MET A 240 1 12 HELIX 14 14 ASP A 255 GLN A 282 1 28 HELIX 15 15 SER A 316 HIS A 320 5 5 HELIX 16 16 THR A 330 TYR A 344 1 15 HELIX 17 17 LYS A 345 LEU A 349 5 5 HELIX 18 18 LYS A 357 ALA A 362 1 6 HELIX 19 19 LYS A 366 ARG A 370 5 5 HELIX 20 20 ASN A 374 ILE A 382 5 9 HELIX 21 21 GLU A 390 VAL A 396 5 7 HELIX 22 22 THR A 397 GLY A 403 1 7 HELIX 23 23 ALA A 411 ASN A 426 1 16 HELIX 24 24 LEU A 443 VAL A 449 5 7 HELIX 25 25 SER A 478 THR A 492 1 15 HELIX 26 26 GLU A 502 HIS A 506 1 5 HELIX 27 27 ILE A 508 ILE A 526 1 19 HELIX 28 28 HIS A 542 GLN A 546 5 5 HELIX 29 29 GLY A 550 GLN A 554 5 5 HELIX 30 30 GLY A 557 ILE A 563 1 7 HELIX 31 31 ASN A 564 THR A 566 5 3 HELIX 32 32 ASP A 580 SER A 594 1 15 HELIX 33 33 THR A 613 GLY A 624 1 12 HELIX 34 34 GLY A 648 MET A 665 1 18 HELIX 35 35 ASP A 676 GLN A 681 5 6 HELIX 36 36 THR A 691 THR A 700 1 10 HELIX 37 37 TYR A 712 ILE A 720 1 9 HELIX 38 38 ASN A 725 ASP A 727 5 3 HELIX 39 39 THR A 742 VAL A 749 1 8 HELIX 40 40 ASP A 753 ALA A 767 1 15 HELIX 41 41 TYR A 770 GLY A 792 1 23 HELIX 42 42 ILE A 795 ASP A 800 1 6 SHEET 1 A 5 ILE A 92 MET A 93 0 SHEET 2 A 5 PHE A 175 GLY A 181 1 O ILE A 179 N ILE A 92 SHEET 3 A 5 ILE A 207 LEU A 214 1 O HIS A 213 N ILE A 180 SHEET 4 A 5 TYR A 291 ARG A 297 1 O LEU A 294 N LEU A 212 SHEET 5 A 5 TYR A 242 VAL A 248 1 N TYR A 245 O ILE A 295 SHEET 1 B 2 PHE A 307 ILE A 308 0 SHEET 2 B 2 LYS A 311 LYS A 312 -1 O LYS A 311 N ILE A 308 SHEET 1 C 2 TRP A 406 VAL A 409 0 SHEET 2 C 2 ALA A 608 THR A 610 -1 O THR A 610 N TRP A 406 SHEET 1 D 6 VAL A 473 GLU A 475 0 SHEET 2 D 6 PHE A 430 GLY A 434 1 N ILE A 432 O THR A 474 SHEET 3 D 6 HIS A 495 TYR A 501 1 O HIS A 495 N ARG A 431 SHEET 4 D 6 VAL A 535 SER A 540 1 O LEU A 538 N TRP A 498 SHEET 5 D 6 ILE A 598 PHE A 602 1 O ASN A 599 N VAL A 535 SHEET 6 D 6 THR A 573 PHE A 577 1 N TYR A 576 O PHE A 602 SHEET 1 E 2 LYS A 452 GLN A 453 0 SHEET 2 E 2 MET A 467 ALA A 468 1 O ALA A 468 N LYS A 452 SHEET 1 F 5 ALA A 625 GLU A 627 0 SHEET 2 F 5 PHE A 669 VAL A 674 -1 O ASN A 673 N ALA A 626 SHEET 3 F 5 VAL A 642 ALA A 647 1 N LEU A 644 O LYS A 670 SHEET 4 F 5 VAL A 705 TYR A 709 1 O LEU A 706 N ALA A 645 SHEET 5 F 5 PHE A 729 VAL A 732 1 O VAL A 732 N TYR A 709 LINK OD1 ASP A 182 MG MG A 826 1555 1555 2.07 LINK OD1 ASN A 215 MG MG A 826 1555 1555 2.12 LINK O TYR A 217 MG MG A 826 1555 1555 2.14 LINK NE2 HIS A 726 NA NA A 828 1555 1555 2.17 LINK OD1 ASP A 727 NA NA A 828 1555 1555 2.24 LINK MG MG A 826 O1B TPP A 827 1555 1555 2.07 LINK MG MG A 826 O2A TPP A 827 1555 1555 2.08 LINK MG MG A 826 O HOH A1294 1555 1555 2.19 CISPEP 1 GLU A 50 PRO A 51 0 -0.88 SITE 1 AC1 5 ASP A 182 ASN A 215 TYR A 217 TPP A 827 SITE 2 AC1 5 HOH A1294 SITE 1 AC2 22 THR A 67 HIS A 97 GLY A 155 LEU A 157 SITE 2 AC2 22 GLY A 181 ASP A 182 GLY A 183 GLU A 184 SITE 3 AC2 22 ASN A 215 TYR A 217 LYS A 218 ILE A 219 SITE 4 AC2 22 LYS A 300 HIS A 320 ASP A 436 GLU A 437 SITE 5 AC2 22 LEU A 477 GLU A 479 PHE A 504 MG A 826 SITE 6 AC2 22 HOH A 936 HOH A1294 SITE 1 AC3 2 HIS A 726 ASP A 727 SITE 1 AC4 7 ASN A 637 ASP A 638 THR A 700 ALA A 701 SITE 2 AC4 7 ASP A 702 LYS A 703 HOH A1511 SITE 1 AC5 5 GLU A 627 ALA A 634 ASN A 636 ASN A 637 SITE 2 AC5 5 LYS A 670 SITE 1 AC6 5 LYS A 49 LYS A 783 HOH A1321 HOH A1574 SITE 2 AC6 5 HOH A1627 SITE 1 AC7 3 ASP A 230 GLU A 231 HOH A1071 SITE 1 AC8 3 GLN A 127 ARG A 131 HOH A1468 SITE 1 AC9 5 ARG A 524 GLU A 525 PHE A 551 GLY A 738 SITE 2 AC9 5 HOH A1075 SITE 1 BC1 3 THR A 283 LYS A 312 GLU A 314 SITE 1 BC2 4 VAL A 248 PHE A 251 HOH A1550 HOH A1551 SITE 1 BC3 5 LEU A 777 PHE A 780 GLU A 797 HOH A1487 SITE 2 BC3 5 HOH A1655 SITE 1 BC4 7 ALA A 220 TRP A 317 LYS A 452 VAL A 463 SITE 2 BC4 7 ASP A 464 GLU A 465 MET A 467 SITE 1 BC5 6 THR A 566 PHE A 567 GLN A 681 ARG A 717 SITE 2 BC5 6 HOH A1179 HOH A1594 SITE 1 BC6 7 GLN A 321 ARG A 442 ASP A 547 HIS A 548 SITE 2 BC6 7 HOH A1464 HOH A1531 HOH A1704 CRYST1 174.766 174.766 163.839 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006104 0.00000