HEADER HYDROLASE 29-APR-10 3AHS TITLE CRYSTAL STRUCTURE OF USTILAGO SPHAEROGENA RIBONUCLEASE U2B COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE U2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: RNASE U2; COMPND 5 EC: 3.1.27.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: USTILAGO SPHAEROGENA; SOURCE 3 ORGANISM_COMMON: SMUT FUNGUS; SOURCE 4 ORGANISM_TAXID: 5271 KEYWDS PURINE-SPECIFIC ENDO-RIBONUCLEASE, HYDROLASE, ISOASPARTATE EXPDTA X-RAY DIFFRACTION AUTHOR S.NOGUCHI REVDAT 5 01-NOV-23 3AHS 1 REMARK LINK REVDAT 4 27-JUL-11 3AHS 1 HETNAM HETSYN REVDAT 3 13-JUL-11 3AHS 1 VERSN REVDAT 2 08-SEP-10 3AHS 1 JRNL REVDAT 1 07-JUL-10 3AHS 0 JRNL AUTH S.NOGUCHI JRNL TITL STRUCTURAL CHANGES INDUCED BY THE DEAMIDATION AND JRNL TITL 2 ISOMERIZATION OF ASPARAGINE REVEALED BY THE CRYSTAL JRNL TITL 3 STRUCTURE OF USTILAGO SPHAEROGENA RIBONUCLEASE U2B JRNL REF BIOPOLYMERS V. 93 1003 2010 JRNL REFN ISSN 0006-3525 JRNL PMID 20623666 JRNL DOI 10.1002/BIP.21514 REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 114132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5706 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7939 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 414 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2757 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1715 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3792 ; 1.487 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4198 ; 5.263 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 6.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;32.445 ;25.395 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;11.209 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ; 8.932 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3229 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 551 ; 0.013 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1702 ; 1.428 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 685 ; 3.221 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2765 ; 2.322 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1055 ; 3.061 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1025 ; 4.401 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4470 ; 2.135 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGEN ATOMS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3AHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000029270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : TRIANGULAR SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114464 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 68.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3AGN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.84M SODIUM DIHYDROGENPHOSPHATE, REMARK 280 1.26M DIPOTASSIUM HYDROGENPHOSPHATE, PH 6.9, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.20167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.40333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.40333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.20167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 260 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP C 29 REMARK 465 VAL C 30 REMARK 465 ALA C 31 REMARK 465 IAS C 32 REMARK 465 GLY C 33 REMARK 465 ASP C 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 38 -1.03 69.26 REMARK 500 ASN B 38 -1.36 67.25 REMARK 500 ASN C 38 -3.23 69.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 116 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 28 O REMARK 620 2 VAL A 30 O 110.6 REMARK 620 3 GLY A 33 O 150.3 96.0 REMARK 620 4 HOH A 505 O 78.8 166.1 77.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 116 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 28 OD2 REMARK 620 2 ASP A 28 OD1 39.3 REMARK 620 3 VAL A 30 O 118.3 79.1 REMARK 620 4 GLY A 33 O 143.1 156.3 93.4 REMARK 620 5 HOH A 505 O 74.3 96.9 130.0 70.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 116 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 28 O REMARK 620 2 VAL B 30 O 107.2 REMARK 620 3 GLY B 33 O 150.8 96.4 REMARK 620 4 HOH B 427 O 79.5 165.9 81.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 116 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 28 OD2 REMARK 620 2 ASP B 28 OD1 38.9 REMARK 620 3 VAL B 30 O 120.9 83.0 REMARK 620 4 GLY B 33 O 139.7 166.4 99.2 REMARK 620 5 HOH B 427 O 70.7 96.3 144.8 74.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AGN RELATED DB: PDB REMARK 900 SAME PROTEIN WITH ORIGINAL ASN32, COMPLEXED WITH ADENOSINE-3'- REMARK 900 MONOPHOSPHATE REMARK 900 RELATED ID: 3AGO RELATED DB: PDB REMARK 900 SAME PROTEIN WITH ORIGINAL ASN32, COMPLEXED WITH ADENOSINE-3'- REMARK 900 MONOPHOSPHATE REMARK 900 RELATED ID: 1RTU RELATED DB: PDB REMARK 900 SAME PROTEIN WITH ORIGINAL ASN32 AND ISOASPARTATE AT RESIDUE 45 AND REMARK 900 RELATED ID: 3AHW RELATED DB: PDB REMARK 900 SAME PROTEIN WITH ORIGINAL ASN32, COMPLEXED WITH ADENOSINE 2'- REMARK 900 MONOPHOSPHATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 ASN32 IS DEAMIDATED AND ISOMERIZED TO ISOASPARTATE. DBREF 3AHS A 1 114 UNP P00654 RNU2_USTSP 1 114 DBREF 3AHS B 1 114 UNP P00654 RNU2_USTSP 1 114 DBREF 3AHS C 1 114 UNP P00654 RNU2_USTSP 1 114 SEQADV 3AHS IAS A 32 UNP P00654 ASN 32 SEE REMARK 999 SEQADV 3AHS IAS B 32 UNP P00654 ASN 32 SEE REMARK 999 SEQADV 3AHS IAS C 32 UNP P00654 ASN 32 SEE REMARK 999 SEQRES 1 A 114 CYS ASP ILE PRO GLN SER THR ASN CYS GLY GLY ASN VAL SEQRES 2 A 114 TYR SER ASN ASP ASP ILE ASN THR ALA ILE GLN GLY ALA SEQRES 3 A 114 LEU ASP ASP VAL ALA IAS GLY ASP ARG PRO ASP ASN TYR SEQRES 4 A 114 PRO HIS GLN TYR TYR ASP GLU ALA SER GLU ASP ILE THR SEQRES 5 A 114 LEU CYS CYS GLY SER GLY PRO TRP SER GLU PHE PRO LEU SEQRES 6 A 114 VAL TYR ASN GLY PRO TYR TYR SER SER ARG ASP ASN TYR SEQRES 7 A 114 VAL SER PRO GLY PRO ASP ARG VAL ILE TYR GLN THR ASN SEQRES 8 A 114 THR GLY GLU PHE CYS ALA THR VAL THR HIS THR GLY ALA SEQRES 9 A 114 ALA SER TYR ASP GLY PHE THR GLN CYS SER SEQRES 1 B 114 CYS ASP ILE PRO GLN SER THR ASN CYS GLY GLY ASN VAL SEQRES 2 B 114 TYR SER ASN ASP ASP ILE ASN THR ALA ILE GLN GLY ALA SEQRES 3 B 114 LEU ASP ASP VAL ALA IAS GLY ASP ARG PRO ASP ASN TYR SEQRES 4 B 114 PRO HIS GLN TYR TYR ASP GLU ALA SER GLU ASP ILE THR SEQRES 5 B 114 LEU CYS CYS GLY SER GLY PRO TRP SER GLU PHE PRO LEU SEQRES 6 B 114 VAL TYR ASN GLY PRO TYR TYR SER SER ARG ASP ASN TYR SEQRES 7 B 114 VAL SER PRO GLY PRO ASP ARG VAL ILE TYR GLN THR ASN SEQRES 8 B 114 THR GLY GLU PHE CYS ALA THR VAL THR HIS THR GLY ALA SEQRES 9 B 114 ALA SER TYR ASP GLY PHE THR GLN CYS SER SEQRES 1 C 114 CYS ASP ILE PRO GLN SER THR ASN CYS GLY GLY ASN VAL SEQRES 2 C 114 TYR SER ASN ASP ASP ILE ASN THR ALA ILE GLN GLY ALA SEQRES 3 C 114 LEU ASP ASP VAL ALA IAS GLY ASP ARG PRO ASP ASN TYR SEQRES 4 C 114 PRO HIS GLN TYR TYR ASP GLU ALA SER GLU ASP ILE THR SEQRES 5 C 114 LEU CYS CYS GLY SER GLY PRO TRP SER GLU PHE PRO LEU SEQRES 6 C 114 VAL TYR ASN GLY PRO TYR TYR SER SER ARG ASP ASN TYR SEQRES 7 C 114 VAL SER PRO GLY PRO ASP ARG VAL ILE TYR GLN THR ASN SEQRES 8 C 114 THR GLY GLU PHE CYS ALA THR VAL THR HIS THR GLY ALA SEQRES 9 C 114 ALA SER TYR ASP GLY PHE THR GLN CYS SER HET IAS A 32 8 HET IAS B 32 8 HET PO4 A 115 5 HET K A 116 2 HET GOL A 202 6 HET PO4 B 115 5 HET K B 116 2 HET PO4 C 115 5 HET GOL C 201 8 HETNAM IAS BETA-L-ASPARTIC ACID HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN IAS L-ASPARTIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 IAS 2(C4 H7 N O4) FORMUL 4 PO4 3(O4 P 3-) FORMUL 5 K 2(K 1+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 11 HOH *404(H2 O) HELIX 1 1 ASN A 16 ASP A 28 1 13 HELIX 2 2 ASN B 16 ASP B 28 1 13 HELIX 3 3 ASN C 16 ASP C 28 1 13 SHEET 1 A 2 SER A 6 CYS A 9 0 SHEET 2 A 2 ASN A 12 SER A 15 -1 O ASN A 12 N CYS A 9 SHEET 1 B 5 HIS A 41 GLN A 42 0 SHEET 2 B 5 TRP A 60 PRO A 64 -1 O GLU A 62 N HIS A 41 SHEET 3 B 5 ASP A 84 GLN A 89 -1 O TYR A 88 N SER A 61 SHEET 4 B 5 PHE A 95 THR A 100 -1 O ALA A 97 N ILE A 87 SHEET 5 B 5 THR A 111 GLN A 112 -1 O THR A 111 N THR A 100 SHEET 1 C 2 SER B 6 CYS B 9 0 SHEET 2 C 2 ASN B 12 SER B 15 -1 O ASN B 12 N CYS B 9 SHEET 1 D 5 HIS B 41 TYR B 43 0 SHEET 2 D 5 TRP B 60 PRO B 64 -1 O GLU B 62 N HIS B 41 SHEET 3 D 5 ASP B 84 GLN B 89 -1 O TYR B 88 N SER B 61 SHEET 4 D 5 PHE B 95 THR B 100 -1 O ALA B 97 N ILE B 87 SHEET 5 D 5 THR B 111 GLN B 112 -1 O THR B 111 N THR B 100 SHEET 1 E 2 SER C 6 CYS C 9 0 SHEET 2 E 2 ASN C 12 SER C 15 -1 O ASN C 12 N CYS C 9 SHEET 1 F 5 HIS C 41 GLN C 42 0 SHEET 2 F 5 TRP C 60 PRO C 64 -1 O GLU C 62 N HIS C 41 SHEET 3 F 5 ASP C 84 GLN C 89 -1 O TYR C 88 N SER C 61 SHEET 4 F 5 PHE C 95 THR C 100 -1 O ALA C 97 N ILE C 87 SHEET 5 F 5 THR C 111 GLN C 112 -1 O THR C 111 N THR C 100 SSBOND 1 CYS A 1 CYS A 54 1555 1555 2.03 SSBOND 2 CYS A 9 CYS A 113 1555 1555 2.11 SSBOND 3 CYS A 55 CYS A 96 1555 1555 2.06 SSBOND 4 CYS B 1 CYS B 54 1555 1555 2.05 SSBOND 5 CYS B 9 CYS B 113 1555 1555 2.12 SSBOND 6 CYS B 55 CYS B 96 1555 1555 2.10 SSBOND 7 CYS C 1 CYS C 54 1555 1555 2.06 SSBOND 8 CYS C 9 CYS C 113 1555 1555 2.11 SSBOND 9 CYS C 55 CYS C 96 1555 1555 2.10 LINK C ALA A 31 N IAS A 32 1555 1555 1.33 LINK CG IAS A 32 N GLY A 33 1555 1555 1.34 LINK C ALA B 31 N IAS B 32 1555 1555 1.33 LINK CG IAS B 32 N GLY B 33 1555 1555 1.33 LINK O ASP A 28 K A K A 116 1555 1555 2.86 LINK OD2 ASP A 28 K B K A 116 1555 1555 3.07 LINK OD1 ASP A 28 K B K A 116 1555 1555 3.37 LINK O VAL A 30 K A K A 116 1555 1555 2.81 LINK O VAL A 30 K B K A 116 1555 1555 2.91 LINK O GLY A 33 K A K A 116 1555 1555 2.84 LINK O GLY A 33 K B K A 116 1555 1555 2.86 LINK K A K A 116 O HOH A 505 1555 1555 2.88 LINK K B K A 116 O HOH A 505 1555 1555 3.32 LINK O ASP B 28 K A K B 116 1555 1555 2.85 LINK OD2 ASP B 28 K B K B 116 1555 1555 3.28 LINK OD1 ASP B 28 K B K B 116 1555 1555 3.32 LINK O VAL B 30 K B K B 116 1555 1555 2.69 LINK O VAL B 30 K A K B 116 1555 1555 2.86 LINK O GLY B 33 K A K B 116 1555 1555 2.80 LINK O GLY B 33 K B K B 116 1555 1555 2.85 LINK K A K B 116 O HOH B 427 1555 1555 2.85 LINK K B K B 116 O HOH B 427 1555 1555 3.26 CISPEP 1 TYR A 39 PRO A 40 0 -11.13 CISPEP 2 GLY A 58 PRO A 59 0 8.52 CISPEP 3 GLY A 69 PRO A 70 0 6.27 CISPEP 4 TYR B 39 PRO B 40 0 -14.63 CISPEP 5 GLY B 58 PRO B 59 0 1.60 CISPEP 6 GLY B 69 PRO B 70 0 6.58 CISPEP 7 TYR C 39 PRO C 40 0 -12.63 CISPEP 8 GLY C 58 PRO C 59 0 2.16 CISPEP 9 GLY C 69 PRO C 70 0 0.82 SITE 1 AC1 10 TYR A 39 HIS A 41 GLU A 62 ARG A 85 SITE 2 AC1 10 HIS A 101 PHE A 110 HOH A 247 HOH A 382 SITE 3 AC1 10 HOH A 488 TYR C 78 SITE 1 AC2 4 ASP A 28 VAL A 30 GLY A 33 HOH A 505 SITE 1 AC3 10 TYR B 39 HIS B 41 GLU B 62 TYR B 78 SITE 2 AC3 10 ARG B 85 HIS B 101 PHE B 110 HOH B 258 SITE 3 AC3 10 HOH B 282 HOH B 390 SITE 1 AC4 4 ASP B 28 VAL B 30 GLY B 33 HOH B 427 SITE 1 AC5 10 TYR A 78 TYR C 39 HIS C 41 GLU C 62 SITE 2 AC5 10 ARG C 85 HIS C 101 PHE C 110 HOH C 305 SITE 3 AC5 10 HOH C 320 HOH C 438 SITE 1 AC6 12 GLY B 10 THR B 102 GLY B 103 THR B 111 SITE 2 AC6 12 GLY C 10 GLY C 11 ASN C 12 THR C 102 SITE 3 AC6 12 HOH C 294 HOH C 329 HOH C 367 HOH C 481 SITE 1 AC7 3 TYR A 44 GLU A 46 HOH A 437 CRYST1 98.237 98.237 87.605 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010179 0.005877 0.000000 0.00000 SCALE2 0.000000 0.011754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011415 0.00000