HEADER FLUORESCENT PROTEIN, TRANSCRIPTION 10-MAY-10 3AI5 TITLE CRYSTAL STRUCTURE OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN- TITLE 2 UBIQUITIN FUSION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: YEAST ENHANCED GREEN FLUORESCENT PROTEIN,UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-230 FOR YEAST ENHANCED GREEN FLUORESCENT COMPND 5 PROTEIN,RESIDUES 1-74 FOR UBIQUITIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: JELLYFISH, MOUSE; SOURCE 4 ORGANISM_TAXID: 6100, 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GREEN FLUORESCENT PROTEIN, UBIQUITIN, FUSION PROTEIN, FLUORESCENT KEYWDS 2 PROTEIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.SUZUKI,S.WAKATSUKI,M.KAWASAKI REVDAT 5 15-NOV-23 3AI5 1 REMARK REVDAT 4 01-NOV-23 3AI5 1 REMARK LINK REVDAT 3 14-JUN-17 3AI5 1 REMARK DBREF SEQADV REVDAT 2 27-OCT-10 3AI5 1 JRNL REVDAT 1 29-SEP-10 3AI5 0 JRNL AUTH N.SUZUKI,M.HIRAKI,Y.YAMADA,N.MATSUGAKI,N.IGARASHI,R.KATO, JRNL AUTH 2 I.DIKIC,D.DREW,S.IWATA,S.WAKATSUKI,M.KAWASAKI JRNL TITL CRYSTALLIZATION OF SMALL PROTEINS ASSISTED BY GREEN JRNL TITL 2 FLUORESCENT PROTEIN JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 1059 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 20944239 JRNL DOI 10.1107/S0907444910032944 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 59297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3172 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.905 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2452 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3302 ; 1.884 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 6.842 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;34.066 ;25.517 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 434 ;12.757 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.438 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4112 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1481 ; 1.159 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2401 ; 2.092 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 971 ; 3.062 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 901 ; 4.955 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 230 REMARK 3 RESIDUE RANGE : A 232 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8061 0.1033 7.9771 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: 0.0066 REMARK 3 T33: 0.0320 T12: 0.0015 REMARK 3 T13: 0.0067 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.5006 L22: 0.3389 REMARK 3 L33: 0.5658 L12: 0.0398 REMARK 3 L13: 0.1568 L23: 0.0753 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0106 S13: -0.0117 REMARK 3 S21: -0.0370 S22: -0.0140 S23: -0.0115 REMARK 3 S31: 0.0040 S32: 0.0164 S33: 0.0137 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000029283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62484 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 10.2.35 REMARK 200 STARTING MODEL: PDB ENTRY 1GFL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% TRYPTONE, 20% PEG 3350, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.25750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.82450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.25750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.82450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 YEAST ENHANCED GREEN FLUORESCENT PROTEIN - UBIQUITIN FUSION PROTEIN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ARG A 304 REMARK 465 LEU A 305 REMARK 465 ARG A 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 320 O HOH A 330 1.59 REMARK 500 N GLY A 10 O HOH A 579 1.62 REMARK 500 OE2 GLU A 222 O HOH A 535 1.84 REMARK 500 O HOH A 307 O HOH A 551 1.87 REMARK 500 NZ LYS A 113 O HOH A 480 1.89 REMARK 500 CD GLU A 222 O HOH A 535 1.93 REMARK 500 O THR A 9 O HOH A 362 1.94 REMARK 500 O HOH A 364 O HOH A 597 2.08 REMARK 500 O HOH A 546 O HOH A 578 2.10 REMARK 500 CG GLU A 222 O HOH A 535 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 2 N - CA - CB ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP A 117 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -158.04 -153.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 576 DISTANCE = 6.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 319 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AI4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN - REMARK 900 MOUSE POLYMERASE IOTA UBIQUITIN BINDING MOTIF FUSION PROTEIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN HAS BEEN REMARK 999 DEPOSITED IN GENBANK WITH ACCESSION CODE, ABI82055. RESIDUES -2,-1, REMARK 999 0 ARE EXPRESSION TAGS, AND RESIDUE 68 CR2 IS CHROMOPHORE (GLY-TYR- REMARK 999 GLY). DBREF 3AI5 A -2 230 PDB 3AI5 3AI5 -2 230 DBREF 3AI5 A 233 306 UNP E9Q9J0 E9Q9J0_MOUSE 1 74 SEQADV 3AI5 GLY A 231 PDB LINKER SEQADV 3AI5 SER A 232 PDB LINKER SEQRES 1 A 307 GLY SER HIS MET SER LYS GLY GLU GLU LEU PHE THR GLY SEQRES 2 A 307 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN SEQRES 3 A 307 GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP SEQRES 4 A 307 ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR SEQRES 5 A 307 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR SEQRES 6 A 307 THR PHE CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS SEQRES 7 A 307 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU SEQRES 8 A 307 GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP SEQRES 9 A 307 GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY SEQRES 10 A 307 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP SEQRES 11 A 307 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU SEQRES 12 A 307 TYR ASN TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP SEQRES 13 A 307 LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG SEQRES 14 A 307 HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS SEQRES 15 A 307 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU SEQRES 16 A 307 LEU PRO ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SEQRES 17 A 307 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU SEQRES 18 A 307 LEU GLU PHE VAL THR ALA ALA GLY ILE THR GLY SER MET SEQRES 19 A 307 GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE THR SEQRES 20 A 307 LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS SEQRES 21 A 307 ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN SEQRES 22 A 307 GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY SEQRES 23 A 307 ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER THR SEQRES 24 A 307 LEU HIS LEU VAL LEU ARG LEU ARG MODRES 3AI5 CR2 A 66 GLY MODRES 3AI5 CR2 A 66 TYR MODRES 3AI5 CR2 A 66 GLY HET CR2 A 66 19 HET EDO A 315 4 HET EDO A 316 4 HET EDO A 317 4 HET EDO A 318 4 HET EDO A 319 4 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CR2 C13 H13 N3 O4 FORMUL 2 EDO 5(C2 H6 O2) FORMUL 7 HOH *299(H2 O) HELIX 1 1 LYS A 3 THR A 9 5 7 HELIX 2 2 PRO A 56 VAL A 61 5 6 HELIX 3 3 VAL A 68 ALA A 72 5 5 HELIX 4 4 PRO A 75 HIS A 81 5 7 HELIX 5 5 ASP A 82 ALA A 87 1 6 HELIX 6 6 THR A 254 GLY A 267 1 14 HELIX 7 7 PRO A 269 GLN A 273 5 5 HELIX 8 8 LEU A 288 ASN A 292 5 5 SHEET 1 A12 VAL A 11 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 A12 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 A12 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 A12 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 A12 HIS A 148 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 A12 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 A12 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 A12 TYR A 92 PHE A 100 -1 N GLU A 95 O GLN A 184 SHEET 10 A12 ASN A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 A12 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 A12 VAL A 11 VAL A 22 1 N ASP A 21 O GLY A 127 SHEET 1 B 5 THR A 244 VAL A 249 0 SHEET 2 B 5 MET A 233 LYS A 238 -1 N MET A 233 O VAL A 249 SHEET 3 B 5 THR A 298 VAL A 302 1 O LEU A 301 N LYS A 238 SHEET 4 B 5 ARG A 274 PHE A 277 -1 N ARG A 274 O VAL A 302 SHEET 5 B 5 LYS A 280 GLN A 281 -1 O LYS A 280 N PHE A 277 LINK C PHE A 64 N1 CR2 A 66 1555 1555 1.39 LINK C3 CR2 A 66 N VAL A 68 1555 1555 1.29 CISPEP 1 MET A 88 PRO A 89 0 4.69 SITE 1 AC1 5 GLU A 142 TYR A 143 SER A 202 HOH A 378 SITE 2 AC1 5 HOH A 607 SITE 1 AC2 6 GLU A 34 ASP A 36 LYS A 41 THR A 43 SITE 2 AC2 6 HOH A 449 HOH A 465 SITE 1 AC3 7 ARG A 96 THR A 97 GLY A 116 ASP A 117 SITE 2 AC3 7 TYR A 182 EDO A 319 HOH A 553 SITE 1 AC4 4 ARG A 109 GLU A 111 ARG A 122 GLU A 124 SITE 1 AC5 5 GLU A 95 ARG A 96 THR A 108 EDO A 317 SITE 2 AC5 5 HOH A 506 CRYST1 92.515 65.649 70.225 90.00 130.34 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010809 0.000000 0.009180 0.00000 SCALE2 0.000000 0.015233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018683 0.00000