HEADER TRANSFERASE 11-MAY-10 3AIA TITLE CRYSTAL STRUCTURE OF DUF358 REVEALS A PUTATIVE SPOUT-CLASS TITLE 2 METHLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0217 PROTEIN MJ1640; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_COMMON: METHANOCOCCUS JANNASCHII; SOURCE 4 ORGANISM_TAXID: 2190; SOURCE 5 GENE: MJ1640; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS DUF358, RRNA METHYLTRANSFERASE, SPOUT-CLASS FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.YUAN,H.Y.CHEN REVDAT 2 01-NOV-23 3AIA 1 REMARK SEQADV REVDAT 1 30-MAR-11 3AIA 0 JRNL AUTH H.Y.CHEN,Y.A.YUAN JRNL TITL CRYSTAL STRUCTURE OF MJ1640/DUF358 PROTEIN REVEALS A JRNL TITL 2 PUTATIVE SPOUT-CLASS RNA METHYLTRANSFERASE JRNL REF J MOL CELL BIOL V. 2 366 2010 JRNL REFN ISSN 1674-2788 JRNL PMID 21098051 JRNL DOI 10.1093/JMCB/MJQ034 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 77530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5503 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 296 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3250 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.39000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : -1.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.121 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3372 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4550 ; 1.341 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 5.750 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;36.482 ;24.337 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 628 ;10.542 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.857 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 504 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2508 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1559 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2318 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 331 ; 0.105 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 93 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 106 ; 0.245 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2044 ; 0.855 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3236 ; 1.348 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1470 ; 2.067 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1314 ; 3.157 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 199 REMARK 3 RESIDUE RANGE : B 1 B 199 REMARK 3 RESIDUE RANGE : A 206 A 206 REMARK 3 RESIDUE RANGE : B 206 B 206 REMARK 3 RESIDUE RANGE : A 207 A 207 REMARK 3 RESIDUE RANGE : B 207 B 207 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1290 23.2577 13.0305 REMARK 3 T TENSOR REMARK 3 T11: -0.0017 T22: 0.0104 REMARK 3 T33: 0.0083 T12: 0.0099 REMARK 3 T13: -0.0016 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.0072 L22: 0.3390 REMARK 3 L33: 0.0511 L12: 0.0148 REMARK 3 L13: -0.0180 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.0002 S13: -0.0066 REMARK 3 S21: 0.0444 S22: 0.0029 S23: -0.0051 REMARK 3 S31: -0.0061 S32: -0.0194 S33: -0.0020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000029288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 38.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.14100 REMARK 200 FOR SHELL : 11.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3AI9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PET, MGCL2, AMMONIUM FLUORIDE, TRIS, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.93450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1F REMARK 465 SER A 1E REMARK 465 HIS A 1D REMARK 465 MET A 1C REMARK 465 ALA A 1B REMARK 465 SER A 1A REMARK 465 ARG A 201 REMARK 465 ILE A 202 REMARK 465 CYS A 203 REMARK 465 GLU A 204 REMARK 465 ILE A 205 REMARK 465 GLY B 1F REMARK 465 SER B 1E REMARK 465 HIS B 1D REMARK 465 MET B 1C REMARK 465 ALA B 1B REMARK 465 SER B 1A REMARK 465 ARG B 201 REMARK 465 ILE B 202 REMARK 465 CYS B 203 REMARK 465 GLU B 204 REMARK 465 ILE B 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 285 O HOH A 450 1.58 REMARK 500 O HOH B 413 O HOH B 566 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 225 O HOH B 467 1454 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 -164.50 -167.12 REMARK 500 ASP B 45 -169.67 -176.87 REMARK 500 HIS B 137 -88.07 179.53 REMARK 500 MET B 138 -64.80 -151.23 REMARK 500 ASN B 150 57.30 33.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SAM A 206 REMARK 610 SAM B 206 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PBL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PBL B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AI9 RELATED DB: PDB REMARK 900 MUTANT AT A DIFFERENT SPACE GROUP DBREF 3AIA A 1 205 UNP Q59034 Y1640_METJA 1 205 DBREF 3AIA B 1 205 UNP Q59034 Y1640_METJA 1 205 SEQADV 3AIA GLY A 1F UNP Q59034 EXPRESSION TAG SEQADV 3AIA SER A 1E UNP Q59034 EXPRESSION TAG SEQADV 3AIA HIS A 1D UNP Q59034 EXPRESSION TAG SEQADV 3AIA MET A 1C UNP Q59034 EXPRESSION TAG SEQADV 3AIA ALA A 1B UNP Q59034 EXPRESSION TAG SEQADV 3AIA SER A 1A UNP Q59034 EXPRESSION TAG SEQADV 3AIA GLY B 1F UNP Q59034 EXPRESSION TAG SEQADV 3AIA SER B 1E UNP Q59034 EXPRESSION TAG SEQADV 3AIA HIS B 1D UNP Q59034 EXPRESSION TAG SEQADV 3AIA MET B 1C UNP Q59034 EXPRESSION TAG SEQADV 3AIA ALA B 1B UNP Q59034 EXPRESSION TAG SEQADV 3AIA SER B 1A UNP Q59034 EXPRESSION TAG SEQRES 1 A 211 GLY SER HIS MET ALA SER MET ARG GLU PHE ILE PHE LYS SEQRES 2 A 211 ALA ASN LYS THR ILE THR SER SER ASP ILE ASN LEU LYS SEQRES 3 A 211 ASP LEU PRO GLY SER CYS GLY ARG LEU ASP LEU LEU CYS SEQRES 4 A 211 ARG CYS VAL SER ASP ALA PHE PHE LEU SER HIS ASP ILE SEQRES 5 A 211 ARG ARG ASP VAL VAL PHE TYR ALA VAL LEU TYR GLY GLN SEQRES 6 A 211 PRO ASN PRO PRO VAL CYS ILE LYS PHE VAL GLY SER GLU SEQRES 7 A 211 LEU LYS LYS VAL SER PRO ASP GLU ARG ASN ILE ALA ILE SEQRES 8 A 211 PHE ILE LYS LYS ALA LEU LYS LYS PHE GLU GLU LEU ASP SEQRES 9 A 211 GLU GLU GLN ARG LYS ASP TRP ASN GLN SER THR PRO GLY SEQRES 10 A 211 ILE TYR VAL ARG ARG LEU GLY PHE ARG ASN LEU VAL LEU SEQRES 11 A 211 GLU LYS LEU GLU GLU GLY LYS ASN ILE TYR TYR LEU HIS SEQRES 12 A 211 MET ASN GLY GLU ASP VAL GLU ASN VAL ASP ILE GLU ASN SEQRES 13 A 211 PRO VAL PHE ILE ILE GLY ASP HIS ILE GLY ILE GLY GLU SEQRES 14 A 211 GLU ASP GLU ARG PHE LEU ASP GLU ILE LYS ALA LYS ARG SEQRES 15 A 211 ILE SER LEU SER PRO LEU GLU LEU HIS ALA ASN HIS CYS SEQRES 16 A 211 ILE THR ILE ILE HIS ASN VAL LEU ASP LYS LYS ARG ILE SEQRES 17 A 211 CYS GLU ILE SEQRES 1 B 211 GLY SER HIS MET ALA SER MET ARG GLU PHE ILE PHE LYS SEQRES 2 B 211 ALA ASN LYS THR ILE THR SER SER ASP ILE ASN LEU LYS SEQRES 3 B 211 ASP LEU PRO GLY SER CYS GLY ARG LEU ASP LEU LEU CYS SEQRES 4 B 211 ARG CYS VAL SER ASP ALA PHE PHE LEU SER HIS ASP ILE SEQRES 5 B 211 ARG ARG ASP VAL VAL PHE TYR ALA VAL LEU TYR GLY GLN SEQRES 6 B 211 PRO ASN PRO PRO VAL CYS ILE LYS PHE VAL GLY SER GLU SEQRES 7 B 211 LEU LYS LYS VAL SER PRO ASP GLU ARG ASN ILE ALA ILE SEQRES 8 B 211 PHE ILE LYS LYS ALA LEU LYS LYS PHE GLU GLU LEU ASP SEQRES 9 B 211 GLU GLU GLN ARG LYS ASP TRP ASN GLN SER THR PRO GLY SEQRES 10 B 211 ILE TYR VAL ARG ARG LEU GLY PHE ARG ASN LEU VAL LEU SEQRES 11 B 211 GLU LYS LEU GLU GLU GLY LYS ASN ILE TYR TYR LEU HIS SEQRES 12 B 211 MET ASN GLY GLU ASP VAL GLU ASN VAL ASP ILE GLU ASN SEQRES 13 B 211 PRO VAL PHE ILE ILE GLY ASP HIS ILE GLY ILE GLY GLU SEQRES 14 B 211 GLU ASP GLU ARG PHE LEU ASP GLU ILE LYS ALA LYS ARG SEQRES 15 B 211 ILE SER LEU SER PRO LEU GLU LEU HIS ALA ASN HIS CYS SEQRES 16 B 211 ILE THR ILE ILE HIS ASN VAL LEU ASP LYS LYS ARG ILE SEQRES 17 B 211 CYS GLU ILE HET SAM A 206 20 HET PBL A 207 9 HET SAM B 206 20 HET PBL B 207 9 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM PBL PENTANE-2,2,4,4-TETROL FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 4 PBL 2(C5 H12 O4) FORMUL 7 HOH *490(H2 O) HELIX 1 1 ASN A 18 LEU A 22 5 5 HELIX 2 2 ARG A 28 PHE A 41 1 14 HELIX 3 3 ASP A 79 LEU A 97 1 19 HELIX 4 4 GLU A 100 ASP A 104 5 5 HELIX 5 5 GLY A 118 GLU A 129 1 12 HELIX 6 6 GLU A 144 VAL A 146 5 3 HELIX 7 7 GLY A 162 ILE A 172 1 11 HELIX 8 8 HIS A 185 LYS A 200 1 16 HELIX 9 9 ASN B 18 LEU B 22 5 5 HELIX 10 10 ARG B 28 PHE B 41 1 14 HELIX 11 11 ASP B 79 GLU B 96 1 18 HELIX 12 12 GLU B 100 ASP B 104 5 5 HELIX 13 13 GLY B 118 GLU B 129 1 12 HELIX 14 14 GLY B 162 ILE B 172 1 11 HELIX 15 15 HIS B 185 LYS B 200 1 16 SHEET 1 A 9 ASN A 106 THR A 109 0 SHEET 2 A 9 ILE A 112 ARG A 115 -1 O ILE A 112 N SER A 108 SHEET 3 A 9 VAL A 64 VAL A 69 -1 N CYS A 65 O ARG A 115 SHEET 4 A 9 VAL A 50 LEU A 56 -1 N LEU A 56 O VAL A 64 SHEET 5 A 9 ARG A 2 ALA A 8 1 N ALA A 8 O VAL A 55 SHEET 6 A 9 PRO A 151 GLY A 156 1 O PHE A 153 N GLU A 3 SHEET 7 A 9 ASN A 132 LEU A 136 1 N TYR A 134 O ILE A 154 SHEET 8 A 9 LYS A 175 SER A 178 1 O LYS A 175 N ILE A 133 SHEET 9 A 9 GLU A 141 ASP A 142 1 N GLU A 141 O SER A 178 SHEET 1 B 9 ASN B 106 THR B 109 0 SHEET 2 B 9 ILE B 112 ARG B 115 -1 O ILE B 112 N SER B 108 SHEET 3 B 9 VAL B 64 VAL B 69 -1 N CYS B 65 O ARG B 115 SHEET 4 B 9 VAL B 50 LEU B 56 -1 N LEU B 56 O VAL B 64 SHEET 5 B 9 ARG B 2 ALA B 8 1 N ALA B 8 O VAL B 55 SHEET 6 B 9 PRO B 151 GLY B 156 1 O PHE B 153 N GLU B 3 SHEET 7 B 9 ASN B 132 LEU B 136 1 N TYR B 134 O ILE B 154 SHEET 8 B 9 LYS B 175 SER B 178 1 O ILE B 177 N TYR B 135 SHEET 9 B 9 GLU B 141 ASP B 142 1 N GLU B 141 O SER B 178 CISPEP 1 GLN A 59 PRO A 60 0 3.57 CISPEP 2 PRO A 62 PRO A 63 0 -5.65 CISPEP 3 GLN B 59 PRO B 60 0 -0.25 CISPEP 4 PRO B 62 PRO B 63 0 -7.75 SITE 1 AC1 15 LEU A 136 HIS A 137 MET A 138 ILE A 155 SITE 2 AC1 15 GLY A 156 ASP A 157 HIS A 158 ILE A 177 SITE 3 AC1 15 SER A 178 LEU A 179 SER A 180 LEU A 182 SITE 4 AC1 15 LEU A 184 CYS A 189 HOH A 275 SITE 1 AC2 7 ARG A 48 SER A 71 HOH A 330 HOH A 342 SITE 2 AC2 7 LYS B 103 TRP B 105 HOH B 216 SITE 1 AC3 12 SER A 43 LEU B 136 HIS B 137 GLY B 156 SITE 2 AC3 12 ASP B 157 HIS B 158 SER B 180 LEU B 182 SITE 3 AC3 12 GLU B 183 LEU B 184 CYS B 189 HOH B 476 SITE 1 AC4 9 LYS A 103 TRP A 105 ARG A 115 GLU A 125 SITE 2 AC4 9 HOH A 223 ARG B 48 SER B 71 HOH B 328 SITE 3 AC4 9 HOH B 440 CRYST1 42.862 93.869 53.837 90.00 100.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023331 0.000000 0.004173 0.00000 SCALE2 0.000000 0.010653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018869 0.00000