HEADER VIRAL PROTEIN 05-JUN-10 3AJF TITLE STRUCTURAL INSIGTHS INTO DSRNA BINDING AND RNA SILENCING SUPPRESSION TITLE 2 BY NS3 PROTEIN OF RICE HOJA BLANCA TENUIVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: HELIX DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICE HOJA BLANCA VIRUS; SOURCE 3 ORGANISM_TAXID: 480611; SOURCE 4 STRAIN: CR; SOURCE 5 GENE: NS3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS RNA SILENCING SUPPRESSION, NEGATIVE STRAND RNA VIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.YUAN REVDAT 2 29-JAN-14 3AJF 1 JRNL VERSN REVDAT 1 20-APR-11 3AJF 0 JRNL AUTH X.YANG,S.H.TAN,Y.J.TEH,Y.A.YUAN JRNL TITL STRUCTURAL IMPLICATIONS INTO DSRNA BINDING AND RNA SILENCING JRNL TITL 2 SUPPRESSION BY NS3 PROTEIN OF RICE HOJA BLANCA TENUIVIRUS JRNL REF RNA V. 17 903 2011 JRNL REFN ISSN 1355-8382 JRNL PMID 21460234 JRNL DOI 10.1261/RNA.2552811 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 25361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1349 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1792 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : 1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.052 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3122 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4248 ; 1.534 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 359 ; 4.462 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;37.321 ;23.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 547 ;14.024 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.512 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2300 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1371 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2129 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 125 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 70 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1917 ; 1.342 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3018 ; 1.675 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1378 ; 3.380 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1230 ; 4.466 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8536 16.2847 44.7118 REMARK 3 T TENSOR REMARK 3 T11: -0.0503 T22: -0.0414 REMARK 3 T33: -0.0506 T12: 0.0117 REMARK 3 T13: 0.0135 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.8938 L22: 1.9897 REMARK 3 L33: 1.5401 L12: 0.4301 REMARK 3 L13: -0.1630 L23: -0.6614 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.1030 S13: -0.0529 REMARK 3 S21: 0.1253 S22: 0.0642 S23: -0.0240 REMARK 3 S31: 0.0254 S32: -0.0365 S33: -0.0785 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2806 26.8497 15.4251 REMARK 3 T TENSOR REMARK 3 T11: -0.0418 T22: -0.0324 REMARK 3 T33: -0.0647 T12: 0.0115 REMARK 3 T13: -0.0193 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.8554 L22: 1.0600 REMARK 3 L33: 1.3979 L12: 0.3250 REMARK 3 L13: 0.5202 L23: 0.0674 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.1420 S13: 0.0093 REMARK 3 S21: -0.0744 S22: 0.0235 S23: 0.0653 REMARK 3 S31: 0.0509 S32: -0.0288 S33: -0.0568 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 25 C 113 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9375 39.5984 30.0922 REMARK 3 T TENSOR REMARK 3 T11: -0.0412 T22: -0.0708 REMARK 3 T33: -0.0437 T12: 0.0040 REMARK 3 T13: 0.0135 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.5322 L22: 1.3362 REMARK 3 L33: 1.7002 L12: -0.5164 REMARK 3 L13: -0.5023 L23: 0.5525 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0225 S13: 0.1836 REMARK 3 S21: -0.0628 S22: 0.0568 S23: -0.1196 REMARK 3 S31: -0.0625 S32: -0.0948 S33: -0.0726 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 24 D 113 REMARK 3 ORIGIN FOR THE GROUP (A): 39.6022 16.8714 30.1551 REMARK 3 T TENSOR REMARK 3 T11: -0.0683 T22: -0.0355 REMARK 3 T33: -0.0416 T12: 0.0110 REMARK 3 T13: -0.0040 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.5488 L22: 1.5530 REMARK 3 L33: 2.2275 L12: -0.0085 REMARK 3 L13: -0.5307 L23: 0.4224 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.1016 S13: 0.0899 REMARK 3 S21: 0.0301 S22: 0.0153 S23: -0.1814 REMARK 3 S31: 0.1016 S32: 0.0874 S33: -0.0315 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB029325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : 180 DEGREE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25361 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SULFATE, MPD, CACODYLATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.04350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.84500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.52175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.84500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.56525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.84500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.84500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.52175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.84500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.84500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.56525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.04350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 126 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 21 REMARK 465 ARG A 114 REMARK 465 ASN B 21 REMARK 465 ARG B 114 REMARK 465 ASN C 21 REMARK 465 GLY C 22 REMARK 465 LEU C 23 REMARK 465 SER C 24 REMARK 465 ARG C 114 REMARK 465 ASN D 21 REMARK 465 GLY D 22 REMARK 465 LEU D 23 REMARK 465 ARG D 114 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 94 CG - CD - NE ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG C 94 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG C 94 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 65 100.96 -174.65 REMARK 500 LYS B 65 104.45 -169.74 REMARK 500 LYS C 65 110.13 -167.76 REMARK 500 LYS D 65 111.93 -169.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL D 74 24.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 7 DBREF 3AJF A 21 114 UNP Q67897 VNS3_RHBVC 21 114 DBREF 3AJF B 21 114 UNP Q67897 VNS3_RHBVC 21 114 DBREF 3AJF C 21 114 UNP Q67897 VNS3_RHBVC 21 114 DBREF 3AJF D 21 114 UNP Q67897 VNS3_RHBVC 21 114 SEQRES 1 A 94 ASN GLY LEU SER ASN ILE VAL LEU THR CYS LYS ASP LEU SEQRES 2 A 94 PRO ILE PRO ILE ASP LEU LEU SER LEU PHE PHE ASP ILE SEQRES 3 A 94 LEU ASN GLU ARG HIS PRO SER PHE ASP GLU HIS MSE PHE SEQRES 4 A 94 LEU GLN MSE ILE ARG LYS PRO ASP ASP PRO GLU ASN LEU SEQRES 5 A 94 SER VAL PHE LEU LYS SER ALA ILE TRP MSE LEU SER HIS SEQRES 6 A 94 LYS ARG ASP LEU PRO GLY HIS TYR ARG LEU PRO LEU THR SEQRES 7 A 94 CYS LEU VAL SER THR TYR SER GLU TYR PHE VAL GLU LEU SEQRES 8 A 94 LYS PRO ARG SEQRES 1 B 94 ASN GLY LEU SER ASN ILE VAL LEU THR CYS LYS ASP LEU SEQRES 2 B 94 PRO ILE PRO ILE ASP LEU LEU SER LEU PHE PHE ASP ILE SEQRES 3 B 94 LEU ASN GLU ARG HIS PRO SER PHE ASP GLU HIS MSE PHE SEQRES 4 B 94 LEU GLN MSE ILE ARG LYS PRO ASP ASP PRO GLU ASN LEU SEQRES 5 B 94 SER VAL PHE LEU LYS SER ALA ILE TRP MSE LEU SER HIS SEQRES 6 B 94 LYS ARG ASP LEU PRO GLY HIS TYR ARG LEU PRO LEU THR SEQRES 7 B 94 CYS LEU VAL SER THR TYR SER GLU TYR PHE VAL GLU LEU SEQRES 8 B 94 LYS PRO ARG SEQRES 1 C 94 ASN GLY LEU SER ASN ILE VAL LEU THR CYS LYS ASP LEU SEQRES 2 C 94 PRO ILE PRO ILE ASP LEU LEU SER LEU PHE PHE ASP ILE SEQRES 3 C 94 LEU ASN GLU ARG HIS PRO SER PHE ASP GLU HIS MSE PHE SEQRES 4 C 94 LEU GLN MSE ILE ARG LYS PRO ASP ASP PRO GLU ASN LEU SEQRES 5 C 94 SER VAL PHE LEU LYS SER ALA ILE TRP MSE LEU SER HIS SEQRES 6 C 94 LYS ARG ASP LEU PRO GLY HIS TYR ARG LEU PRO LEU THR SEQRES 7 C 94 CYS LEU VAL SER THR TYR SER GLU TYR PHE VAL GLU LEU SEQRES 8 C 94 LYS PRO ARG SEQRES 1 D 94 ASN GLY LEU SER ASN ILE VAL LEU THR CYS LYS ASP LEU SEQRES 2 D 94 PRO ILE PRO ILE ASP LEU LEU SER LEU PHE PHE ASP ILE SEQRES 3 D 94 LEU ASN GLU ARG HIS PRO SER PHE ASP GLU HIS MSE PHE SEQRES 4 D 94 LEU GLN MSE ILE ARG LYS PRO ASP ASP PRO GLU ASN LEU SEQRES 5 D 94 SER VAL PHE LEU LYS SER ALA ILE TRP MSE LEU SER HIS SEQRES 6 D 94 LYS ARG ASP LEU PRO GLY HIS TYR ARG LEU PRO LEU THR SEQRES 7 D 94 CYS LEU VAL SER THR TYR SER GLU TYR PHE VAL GLU LEU SEQRES 8 D 94 LYS PRO ARG MODRES 3AJF MSE A 58 MET SELENOMETHIONINE MODRES 3AJF MSE A 62 MET SELENOMETHIONINE MODRES 3AJF MSE A 82 MET SELENOMETHIONINE MODRES 3AJF MSE B 58 MET SELENOMETHIONINE MODRES 3AJF MSE B 62 MET SELENOMETHIONINE MODRES 3AJF MSE B 82 MET SELENOMETHIONINE MODRES 3AJF MSE C 58 MET SELENOMETHIONINE MODRES 3AJF MSE C 62 MET SELENOMETHIONINE MODRES 3AJF MSE C 82 MET SELENOMETHIONINE MODRES 3AJF MSE D 58 MET SELENOMETHIONINE MODRES 3AJF MSE D 62 MET SELENOMETHIONINE MODRES 3AJF MSE D 82 MET SELENOMETHIONINE HET MSE A 58 8 HET MSE A 62 8 HET MSE A 82 8 HET MSE B 58 8 HET MSE B 62 8 HET MSE B 82 8 HET MSE C 58 8 HET MSE C 62 8 HET MSE C 82 8 HET MSE D 58 8 HET MSE D 62 8 HET MSE D 82 8 HET SO4 A 3 5 HET SO4 B 2 5 HET SO4 C 4 5 HET SO4 C 5 5 HET SO4 C 8 5 HET SO4 D 1 5 HET SO4 D 6 5 HET SO4 D 7 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 SO4 8(O4 S 2-) FORMUL 13 HOH *135(H2 O) HELIX 1 1 PRO A 36 HIS A 51 1 16 HELIX 2 2 ASP A 55 LYS A 65 1 11 HELIX 3 3 ASP A 68 HIS A 85 1 18 HELIX 4 4 PRO A 90 HIS A 92 5 3 HELIX 5 5 TYR A 93 GLU A 106 1 14 HELIX 6 6 TYR A 107 GLU A 110 5 4 HELIX 7 7 PRO B 36 HIS B 51 1 16 HELIX 8 8 ASP B 55 LYS B 65 1 11 HELIX 9 9 ASP B 68 HIS B 85 1 18 HELIX 10 10 PRO B 90 HIS B 92 5 3 HELIX 11 11 TYR B 93 GLU B 106 1 14 HELIX 12 12 TYR B 107 GLU B 110 5 4 HELIX 13 13 PRO C 36 HIS C 51 1 16 HELIX 14 14 ASP C 55 LYS C 65 1 11 HELIX 15 15 ASP C 68 HIS C 85 1 18 HELIX 16 16 PRO C 90 HIS C 92 5 3 HELIX 17 17 TYR C 93 SER C 105 1 13 HELIX 18 18 GLU C 106 GLU C 110 5 5 HELIX 19 19 THR D 29 LEU D 33 5 5 HELIX 20 20 PRO D 36 HIS D 51 1 16 HELIX 21 21 ASP D 55 LYS D 65 1 11 HELIX 22 22 ASP D 68 HIS D 85 1 18 HELIX 23 23 PRO D 90 HIS D 92 5 3 HELIX 24 24 TYR D 93 GLU D 106 1 14 HELIX 25 25 TYR D 107 VAL D 109 5 3 SHEET 1 A 2 THR A 29 CYS A 30 0 SHEET 2 A 2 LEU A 33 PRO A 34 -1 O LEU A 33 N CYS A 30 SHEET 1 B 2 LEU B 28 CYS B 30 0 SHEET 2 B 2 LEU B 33 ILE B 35 -1 O LEU B 33 N CYS B 30 SSBOND 1 CYS A 30 CYS A 99 1555 1555 2.09 SSBOND 2 CYS B 30 CYS B 99 1555 1555 2.11 SSBOND 3 CYS C 30 CYS C 99 1555 1555 2.10 SSBOND 4 CYS D 30 CYS D 99 1555 1555 2.08 LINK C HIS A 57 N MSE A 58 1555 1555 1.32 LINK C MSE A 58 N PHE A 59 1555 1555 1.33 LINK C GLN A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N ILE A 63 1555 1555 1.33 LINK C TRP A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N LEU A 83 1555 1555 1.34 LINK C HIS B 57 N MSE B 58 1555 1555 1.33 LINK C MSE B 58 N PHE B 59 1555 1555 1.33 LINK C GLN B 61 N MSE B 62 1555 1555 1.33 LINK C MSE B 62 N ILE B 63 1555 1555 1.33 LINK C TRP B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N LEU B 83 1555 1555 1.33 LINK C HIS C 57 N MSE C 58 1555 1555 1.33 LINK C MSE C 58 N PHE C 59 1555 1555 1.33 LINK C GLN C 61 N MSE C 62 1555 1555 1.33 LINK C MSE C 62 N ILE C 63 1555 1555 1.33 LINK C TRP C 81 N MSE C 82 1555 1555 1.32 LINK C MSE C 82 N LEU C 83 1555 1555 1.33 LINK C HIS D 57 N MSE D 58 1555 1555 1.33 LINK C MSE D 58 N PHE D 59 1555 1555 1.33 LINK C GLN D 61 N MSE D 62 1555 1555 1.33 LINK C MSE D 62 N ILE D 63 1555 1555 1.34 LINK C TRP D 81 N MSE D 82 1555 1555 1.34 LINK C MSE D 82 N LEU D 83 1555 1555 1.33 SITE 1 AC1 4 ARG A 50 HIS A 51 LYS A 77 HOH A 124 SITE 1 AC2 6 ARG B 50 HIS B 51 LYS B 77 HOH B 119 SITE 2 AC2 6 HOH B 138 HOH B 139 SITE 1 AC3 5 ARG C 50 HIS C 51 VAL C 74 LYS C 77 SITE 2 AC3 5 HOH C 121 SITE 1 AC4 6 HIS A 85 HOH A 138 HIS C 51 PRO C 52 SITE 2 AC4 6 SER C 53 GLU D 70 SITE 1 AC5 3 ARG B 64 PHE C 44 HOH C 116 SITE 1 AC6 4 ARG D 50 HIS D 51 LYS D 77 HOH D 136 SITE 1 AC7 6 HIS B 85 GLU C 70 HIS D 51 PRO D 52 SITE 2 AC7 6 SER D 53 HOH D 137 SITE 1 AC8 3 ARG A 64 PHE D 44 HOH D 143 CRYST1 79.690 79.690 122.087 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012549 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008191 0.00000