HEADER OXIDOREDUCTASE 04-AUG-10 3ALK OBSLTE 02-APR-14 3ALK 4H2N TITLE CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC ACID TITLE 2 OXYGENASE, MUTANT Y270F COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC ACID OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.12.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_COMMON: MESORHIZOBIUM LOTI; SOURCE 4 ORGANISM_TAXID: 266835; SOURCE 5 STRAIN: MAFF303099; SOURCE 6 GENE: MLR6788; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ALPHA/BETA FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KOBAYASHI,H.YOSHIDA,Y.YOSHIKANE,S.KAMITORI,T.YAGI REVDAT 2 02-APR-14 3ALK 1 OBSLTE REVDAT 1 10-AUG-11 3ALK 0 JRNL AUTH J.KOBAYASHI,H.YOSHIDA,Y.YOSHIKANE,S.KAMITORI,T.YAGI JRNL TITL CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC JRNL TITL 2 ACID OXYGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 18929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2874 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07100 REMARK 3 B22 (A**2) : -0.06100 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.023 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.726 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ALK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB029399. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI-SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.41200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3ALH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.5, 8% PEG 8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.71900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.56300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.51600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.71900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.56300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.51600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.71900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.56300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.51600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.71900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.56300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.51600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS TETRAMER, BUT SPECIFIC INTERACTION FOR REMARK 300 FORMING TETRAMER IS NOT OBSERVED. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 PRO A 8 REMARK 465 GLY A 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 294 S2 BME A 381 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 295 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -72.78 58.46 REMARK 500 SER A 76 -169.90 -119.58 REMARK 500 PRO A 135 -19.93 -49.40 REMARK 500 SER A 160 118.07 -38.14 REMARK 500 GLU A 195 64.34 -118.06 REMARK 500 ASN A 218 177.15 168.52 REMARK 500 HIS A 291 43.65 -156.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 381 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ALH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5- REMARK 900 CARBOXYLIC ACID OXYGENASE, FREE FORM REMARK 900 RELATED ID: 3ALI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5- REMARK 900 CARBOXYLIC ACID OXYGENASE, 5-PYRIDOXIC ACID BOUND FORM REMARK 900 RELATED ID: 3ALJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5- REMARK 900 CARBOXYLIC ACID OXYGENASE, REDUCED FORM REMARK 900 RELATED ID: 3ALL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5- REMARK 900 CARBOXYLIC ACID OXYGENASE, MUTANT Y270A REMARK 900 RELATED ID: 3ALM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5- REMARK 900 CARBOXYLIC ACID OXYGENASE, MUTANT C294A DBREF 3ALK A 1 379 UNP Q988D3 Q988D3_RHILO 1 379 SEQADV 3ALK PHE A 270 UNP Q988D3 TYR 270 ENGINEERED MUTATION SEQRES 1 A 379 MET ALA ASN VAL ASN LYS THR PRO GLY LYS THR ARG ARG SEQRES 2 A 379 ALA GLU VAL ALA GLY GLY GLY PHE ALA GLY LEU THR ALA SEQRES 3 A 379 ALA ILE ALA LEU LYS GLN ASN GLY TRP ASP VAL ARG LEU SEQRES 4 A 379 HIS GLU LYS SER SER GLU LEU ARG ALA PHE GLY ALA GLY SEQRES 5 A 379 ILE TYR LEU TRP HIS ASN GLY LEU ARG VAL LEU GLU GLY SEQRES 6 A 379 LEU GLY ALA LEU ASP ASP VAL LEU GLN GLY SER HIS THR SEQRES 7 A 379 PRO PRO THR TYR GLU THR TRP MET HIS ASN LYS SER VAL SEQRES 8 A 379 SER LYS GLU THR PHE ASN GLY LEU PRO TRP ARG ILE MET SEQRES 9 A 379 THR ARG SER HIS LEU HIS ASP ALA LEU VAL ASN ARG ALA SEQRES 10 A 379 ARG ALA LEU GLY VAL ASP ILE SER VAL ASN SER GLU ALA SEQRES 11 A 379 VAL ALA ALA ASP PRO VAL GLY ARG LEU THR LEU GLN THR SEQRES 12 A 379 GLY GLU VAL LEU GLU ALA ASP LEU ILE VAL GLY ALA ASP SEQRES 13 A 379 GLY VAL GLY SER LYS VAL ARG ASP SER ILE GLY PHE LYS SEQRES 14 A 379 GLN ASP ARG TRP VAL SER LYS ASP GLY LEU ILE ARG LEU SEQRES 15 A 379 ILE VAL PRO ARG MET LYS LYS GLU LEU GLY HIS GLY GLU SEQRES 16 A 379 TRP ASP ASN THR ILE ASP MET TRP ASN PHE TRP PRO ARG SEQRES 17 A 379 VAL GLN ARG ILE LEU TYR SER PRO CYS ASN GLU ASN GLU SEQRES 18 A 379 LEU TYR LEU GLY LEU MET ALA PRO ALA ALA ASP PRO ARG SEQRES 19 A 379 GLY SER SER VAL PRO ILE ASP LEU GLU VAL TRP VAL GLU SEQRES 20 A 379 MET PHE PRO PHE LEU GLU PRO CYS LEU ILE GLU ALA ALA SEQRES 21 A 379 LYS LEU LYS THR ALA ARG TYR ASP LYS PHE GLU THR THR SEQRES 22 A 379 LYS LEU ASP SER TRP THR ARG GLY LYS VAL ALA LEU VAL SEQRES 23 A 379 GLY ASP ALA ALA HIS ALA MET CYS PRO ALA LEU ALA GLN SEQRES 24 A 379 GLY ALA GLY CYS ALA MET VAL ASN ALA PHE SER LEU SER SEQRES 25 A 379 GLN ASP LEU GLU GLU GLY SER SER VAL GLU ASP ALA LEU SEQRES 26 A 379 VAL ALA TRP GLU THR ARG ILE ARG PRO ILE THR ASP ARG SEQRES 27 A 379 CYS GLN ALA LEU SER GLY ASP TYR ALA ALA ASN ARG SER SEQRES 28 A 379 LEU SER LYS GLY ASN MET PHE THR PRO ALA ALA LEU GLU SEQRES 29 A 379 ALA ALA ARG TYR ASP PRO LEU ARG ARG VAL TYR SER TRP SEQRES 30 A 379 PRO GLN HET FAD A 380 53 HET BME A 381 4 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM BME BETA-MERCAPTOETHANOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 BME C2 H6 O S FORMUL 4 HOH *34(H2 O) HELIX 1 1 GLY A 20 ASN A 33 1 14 HELIX 2 2 HIS A 57 LEU A 66 1 10 HELIX 3 3 ALA A 68 GLN A 74 1 7 HELIX 4 4 THR A 95 LEU A 99 5 5 HELIX 5 5 ARG A 106 LEU A 120 1 15 HELIX 6 6 SER A 160 GLY A 167 1 8 HELIX 7 7 MET A 187 GLY A 192 1 6 HELIX 8 8 ASP A 241 PHE A 249 1 9 HELIX 9 9 LEU A 252 LYS A 261 1 10 HELIX 10 10 GLY A 287 ALA A 292 1 6 HELIX 11 11 GLN A 299 LEU A 315 1 17 HELIX 12 12 SER A 320 ARG A 350 1 31 HELIX 13 13 SER A 351 GLY A 355 5 5 HELIX 14 14 LEU A 363 ARG A 367 1 5 SHEET 1 A 6 ASP A 123 SER A 125 0 SHEET 2 A 6 ASP A 36 HIS A 40 1 N LEU A 39 O ASP A 123 SHEET 3 A 6 ARG A 13 ALA A 17 1 N VAL A 16 O HIS A 40 SHEET 4 A 6 LEU A 151 GLY A 154 1 O VAL A 153 N ALA A 17 SHEET 5 A 6 VAL A 283 LEU A 285 1 O ALA A 284 N GLY A 154 SHEET 6 A 6 THR A 279 ARG A 280 -1 N ARG A 280 O VAL A 283 SHEET 1 B 2 GLY A 52 TRP A 56 0 SHEET 2 B 2 TRP A 101 THR A 105 -1 O ARG A 102 N LEU A 55 SHEET 1 C 7 LYS A 89 GLU A 94 0 SHEET 2 C 7 TYR A 82 MET A 86 -1 N MET A 86 O LYS A 89 SHEET 3 C 7 THR A 199 TRP A 203 1 O ASP A 201 N TRP A 85 SHEET 4 C 7 ARG A 211 PRO A 216 -1 O ILE A 212 N MET A 202 SHEET 5 C 7 GLU A 221 ALA A 228 -1 O MET A 227 N ARG A 211 SHEET 6 C 7 GLN A 170 PRO A 185 -1 N VAL A 184 O LEU A 222 SHEET 7 C 7 TYR A 267 LEU A 275 -1 O ASP A 268 N LEU A 179 SHEET 1 D 3 ALA A 130 ASP A 134 0 SHEET 2 D 3 ARG A 138 LEU A 141 -1 O ARG A 138 N ASP A 134 SHEET 3 D 3 VAL A 146 GLU A 148 -1 O LEU A 147 N LEU A 139 SHEET 1 E 2 TYR A 368 ASP A 369 0 SHEET 2 E 2 VAL A 374 TYR A 375 -1 O VAL A 374 N ASP A 369 CISPEP 1 TRP A 206 PRO A 207 0 -1.98 CISPEP 2 VAL A 238 PRO A 239 0 -11.88 SITE 1 AC1 28 GLY A 18 GLY A 20 PHE A 21 ALA A 22 SITE 2 AC1 28 HIS A 40 GLU A 41 LYS A 42 SER A 43 SITE 3 AC1 28 ILE A 53 TYR A 54 ARG A 106 SER A 128 SITE 4 AC1 28 GLU A 129 ALA A 130 ALA A 155 ASP A 156 SITE 5 AC1 28 ARG A 181 GLY A 287 ASP A 288 ALA A 298 SITE 6 AC1 28 GLY A 300 ALA A 301 GLY A 302 HOH A 384 SITE 7 AC1 28 HOH A 386 HOH A 396 HOH A 406 HOH A 409 SITE 1 AC2 5 TRP A 173 PHE A 270 THR A 272 CYS A 294 SITE 2 AC2 5 ALA A 347 CRYST1 49.438 131.126 133.032 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020227 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007517 0.00000