HEADER VIRAL PROTEIN/MEMBRANE PROTEIN 09-AUG-10 3ALW TITLE CRYSTAL STRUCTURE OF THE MEASLES VIRUS HEMAGGLUTININ BOUND TO ITS TITLE 2 CELLULAR RECEPTOR SLAM (FORM I, MV-H-SLAM(N102H/R108Y) FUSION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ, CDW150; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEMAGGLUTININ HEAD DOMAIN/CD150 V DOMAIN, UNP REISUDES 30- COMPND 5 140; COMPND 6 SYNONYM: CD150, SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: MV-H/SLAM FUSION PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEASLES VIRUS, SYNTHETIC CONSTRUCT, SAGUINUS SOURCE 3 OEDIPUS; SOURCE 4 ORGANISM_COMMON: COTTON-TOP TAMARIN; SOURCE 5 ORGANISM_TAXID: 11234, 32630, 9490; SOURCE 6 STRAIN: EDMONSTON B, B95A; SOURCE 7 GENE: HEMAGGLUTININ, CD150; SOURCE 8 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: HEK293SGNTI(-); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PCA7 KEYWDS VIRAL PROTEIN-RECEPTOR COMPLEX, SIX-BLADED BETA-PROPELLER FOLD, KEYWDS 2 IMMUNOGLOBULIN FOLD, BETA-SANDWICH, VIRAL PROTEIN-MEMBRANE PROTEIN KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.HASHIGUCHI,T.OSE,M.KUBOTA,N.MAITA,J.KAMISHIKIRYO,K.MAENAKA,Y.YANAGI REVDAT 6 01-NOV-23 3ALW 1 HETSYN REVDAT 5 29-JUL-20 3ALW 1 COMPND REMARK DBREF SEQADV REVDAT 5 2 1 HETNAM SSBOND LINK SITE REVDAT 4 28-JUN-17 3ALW 1 SOURCE REVDAT 3 16-FEB-11 3ALW 1 DBREF JRNL REMARK SEQADV REVDAT 2 09-FEB-11 3ALW 1 REMARK REVDAT 1 12-JAN-11 3ALW 0 JRNL AUTH T.HASHIGUCHI,T.OSE,M.KUBOTA,N.MAITA,J.KAMISHIKIRYO, JRNL AUTH 2 K.MAENAKA,Y.YANAGI JRNL TITL STRUCTURE OF THE MEASLES VIRUS HEMAGGLUTININ BOUND TO ITS JRNL TITL 2 CELLULAR RECEPTOR SLAM JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 135 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21217702 JRNL DOI 10.1038/NSMB.1969 REMARK 2 REMARK 2 RESOLUTION. 3.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4911388.710 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 28487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1447 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.68 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2661 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4005 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 138.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.37000 REMARK 3 B22 (A**2) : 13.37000 REMARK 3 B33 (A**2) : -26.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM SIGMAA (A) : 0.65 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.60 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 99.39 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3ALW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000029411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28716 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZB6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 87.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 9.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE PH5.8, 0.5M (NH4)2SO4, REMARK 280 0.7M LI2SO4, 3% ETHYLENE GLYCOL, VAPOR DIFFUSION, FLOATING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.26900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.26900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.26900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 90.26900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 90.26900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 90.26900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -104.95600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 181.78912 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -209.91200 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 90.26900 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -104.95600 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 181.78912 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 90.26900 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 123990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -104.95600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 181.78912 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -209.91200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 90.26900 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -209.91200 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 90.26900 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -104.95600 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 181.78912 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 90.26900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 181 REMARK 465 THR A 182 REMARK 465 GLY A 183 REMARK 465 SER A 184 REMARK 465 LYS A 185 REMARK 465 GLY A 186 REMARK 465 ASN A 187 REMARK 465 ASN A 238 REMARK 465 LEU A 239 REMARK 465 SER A 240 REMARK 465 SER A 241 REMARK 465 LYS A 242 REMARK 465 ARG A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 LEU A 246 REMARK 465 SER A 247 REMARK 465 GLN A 248 REMARK 465 LEU A 249 REMARK 465 ASN A 282 REMARK 465 ASP A 283 REMARK 465 LEU A 284 REMARK 465 THR A 607 REMARK 465 GLY A 608 REMARK 465 GLY A 609 REMARK 465 GLY A 610 REMARK 465 SER A 611 REMARK 465 GLY A 612 REMARK 465 GLY A 613 REMARK 465 GLY A 614 REMARK 465 SER A 615 REMARK 465 GLY A 616 REMARK 465 GLY A 617 REMARK 465 GLY A 618 REMARK 465 SER A 619 REMARK 465 MET A 30 REMARK 465 ASN A 31 REMARK 465 TYR A 138 REMARK 465 GLU A 139 REMARK 465 GLN A 140 REMARK 465 GLY A 141 REMARK 465 THR A 142 REMARK 465 LYS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 212 11.86 -149.50 REMARK 500 GLN A 225 16.71 44.73 REMARK 500 LEU A 233 59.15 -141.01 REMARK 500 ILE A 260 87.39 -61.87 REMARK 500 ASN A 274 126.49 -173.01 REMARK 500 PRO A 279 -163.57 -65.10 REMARK 500 LEU A 294 14.78 42.52 REMARK 500 HIS A 301 -118.20 -162.10 REMARK 500 GLN A 311 -147.11 -132.59 REMARK 500 VAL A 317 160.91 51.33 REMARK 500 PHE A 319 -144.58 -75.30 REMARK 500 MET A 333 154.30 179.67 REMARK 500 SER A 340 82.44 -63.54 REMARK 500 ASP A 347 -77.67 -75.52 REMARK 500 SER A 352 -86.09 -160.45 REMARK 500 ASN A 361 34.70 38.76 REMARK 500 THR A 372 41.31 -93.40 REMARK 500 ASP A 373 27.34 -168.43 REMARK 500 LEU A 376 -7.69 -52.84 REMARK 500 ARG A 377 33.19 -151.39 REMARK 500 MET A 378 -3.18 -171.63 REMARK 500 LYS A 389 -82.68 -43.77 REMARK 500 ASN A 396 69.13 63.69 REMARK 500 LYS A 403 9.87 -61.47 REMARK 500 ASP A 404 22.80 -141.22 REMARK 500 ILE A 407 67.26 -110.46 REMARK 500 PRO A 408 136.90 -27.07 REMARK 500 LEU A 419 -95.07 39.45 REMARK 500 THR A 420 -95.97 44.33 REMARK 500 VAL A 421 -67.22 -28.09 REMARK 500 GLU A 422 99.19 159.73 REMARK 500 PRO A 433 135.43 -22.75 REMARK 500 SER A 439 18.96 -48.43 REMARK 500 MET A 441 98.05 169.13 REMARK 500 ASN A 449 -7.97 -35.60 REMARK 500 LYS A 460 -113.79 60.14 REMARK 500 ASN A 468 -161.21 -128.02 REMARK 500 ARG A 475 171.29 179.09 REMARK 500 PHE A 476 97.96 -57.38 REMARK 500 TYR A 481 -64.77 -146.60 REMARK 500 PHE A 483 27.45 48.49 REMARK 500 PRO A 486 -178.88 -50.61 REMARK 500 GLU A 489 -123.04 72.70 REMARK 500 SER A 512 -155.75 -67.79 REMARK 500 LEU A 522 133.35 -35.90 REMARK 500 TYR A 524 136.36 173.49 REMARK 500 SER A 532 -80.08 -75.34 REMARK 500 ARG A 533 176.28 -44.97 REMARK 500 VAL A 542 67.75 -53.86 REMARK 500 SER A 544 64.78 178.26 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 232 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ALZ RELATED DB: PDB REMARK 900 MEASLES VIRUS HEMAGGLUTININ BOUND TO ITS CELLULAR RECEPTOR SLAM REMARK 900 (FORM I) REMARK 900 RELATED ID: 3ALX RELATED DB: PDB REMARK 900 MEASLES VIRUS HEMAGGLUTININ BOUND TO ITS CELLULAR RECEPTOR SLAM REMARK 900 (FORM II, SLAM(N692H/R698Y)-MV-H(L482R) FUSION) REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE GGGSGGGSGGGS(RESIDUES 608-619) AT THE MIDDLE OF THE SEQUENCE REMARK 999 IS LINKER REGION. DBREF 3ALW A 184 607 UNP E2RZS2 E2RZS2_9PARA 184 607 DBREF 3ALW A 608 619 PDB 3ALW ALW 608 619 DBREF 3ALW A 30 140 UNP Q9GJT3 Q9GJT3_SAGOE 30 140 SEQADV 3ALW GLU A 181 UNP E2RZS2 EXPRESSION TAG SEQADV 3ALW THR A 182 UNP E2RZS2 EXPRESSION TAG SEQADV 3ALW GLY A 183 UNP E2RZS2 EXPRESSION TAG SEQADV 3ALW HIS A 102 UNP Q9GJT3 ASN 102 ENGINEERED MUTATION SEQADV 3ALW TYR A 108 UNP Q9GJT3 ARG 108 ENGINEERED MUTATION SEQADV 3ALW GLY A 141 UNP Q9GJT3 EXPRESSION TAG SEQADV 3ALW THR A 142 UNP Q9GJT3 EXPRESSION TAG SEQADV 3ALW LYS A 143 UNP Q9GJT3 EXPRESSION TAG SEQADV 3ALW HIS A 144 UNP Q9GJT3 EXPRESSION TAG SEQADV 3ALW HIS A 145 UNP Q9GJT3 EXPRESSION TAG SEQADV 3ALW HIS A 146 UNP Q9GJT3 EXPRESSION TAG SEQADV 3ALW HIS A 147 UNP Q9GJT3 EXPRESSION TAG SEQADV 3ALW HIS A 148 UNP Q9GJT3 EXPRESSION TAG SEQADV 3ALW HIS A 149 UNP Q9GJT3 EXPRESSION TAG SEQRES 1 A 559 GLU THR GLY SER LYS GLY ASN CYS SER GLY PRO THR THR SEQRES 2 A 559 ILE ARG GLY GLN PHE SER ASN MET SER LEU SER LEU LEU SEQRES 3 A 559 ASP LEU TYR LEU GLY ARG GLY TYR ASN VAL SER SER ILE SEQRES 4 A 559 VAL THR MET THR SER GLN GLY MET TYR GLY GLY THR TYR SEQRES 5 A 559 LEU VAL GLU LYS PRO ASN LEU SER SER LYS ARG SER GLU SEQRES 6 A 559 LEU SER GLN LEU SER MET TYR ARG VAL PHE GLU VAL GLY SEQRES 7 A 559 VAL ILE ARG ASN PRO GLY LEU GLY ALA PRO VAL PHE HIS SEQRES 8 A 559 MET THR ASN TYR LEU GLU GLN PRO VAL SER ASN ASP LEU SEQRES 9 A 559 SER ASN CYS MET VAL ALA LEU GLY GLU LEU LYS LEU ALA SEQRES 10 A 559 ALA LEU CYS HIS GLY GLU ASP SER ILE THR ILE PRO TYR SEQRES 11 A 559 GLN GLY SER GLY LYS GLY VAL SER PHE GLN LEU VAL LYS SEQRES 12 A 559 LEU GLY VAL TRP LYS SER PRO THR ASP MET GLN SER TRP SEQRES 13 A 559 VAL PRO LEU SER THR ASP ASP PRO VAL ILE ASP ARG LEU SEQRES 14 A 559 TYR LEU SER SER HIS ARG GLY VAL ILE ALA ASP ASN GLN SEQRES 15 A 559 ALA LYS TRP ALA VAL PRO THR THR ARG THR ASP ASP LYS SEQRES 16 A 559 LEU ARG MET GLU THR CYS PHE GLN GLN ALA CYS LYS GLY SEQRES 17 A 559 LYS ILE GLN ALA LEU CYS GLU ASN PRO GLU TRP ALA PRO SEQRES 18 A 559 LEU LYS ASP ASN ARG ILE PRO SER TYR GLY VAL LEU SER SEQRES 19 A 559 VAL ASP LEU SER LEU THR VAL GLU LEU LYS ILE LYS ILE SEQRES 20 A 559 ALA SER GLY PHE GLY PRO LEU ILE THR HIS GLY SER GLY SEQRES 21 A 559 MET ASP LEU TYR LYS SER ASN HIS ASN ASN VAL TYR TRP SEQRES 22 A 559 LEU THR ILE PRO PRO MET LYS ASN LEU ALA LEU GLY VAL SEQRES 23 A 559 ILE ASN THR LEU GLU TRP ILE PRO ARG PHE LYS VAL SER SEQRES 24 A 559 PRO TYR LEU PHE THR VAL PRO ILE LYS GLU ALA GLY GLY SEQRES 25 A 559 ASP CYS HIS ALA PRO THR TYR LEU PRO ALA GLU VAL ASP SEQRES 26 A 559 GLY ASP VAL LYS LEU SER SER ASN LEU VAL ILE LEU PRO SEQRES 27 A 559 GLY GLN ASP LEU GLN TYR VAL LEU ALA THR TYR ASP THR SEQRES 28 A 559 SER ARG VAL GLU HIS ALA VAL VAL TYR TYR VAL TYR SER SEQRES 29 A 559 PRO SER ARG SER PHE SER TYR PHE TYR PRO PHE ARG LEU SEQRES 30 A 559 PRO ILE LYS GLY VAL PRO ILE GLU LEU GLN VAL GLU CYS SEQRES 31 A 559 PHE THR TRP ASP GLN LYS LEU TRP CYS ARG HIS PHE CYS SEQRES 32 A 559 VAL LEU ALA ASP SER GLU SER GLY GLY HIS ILE THR HIS SEQRES 33 A 559 SER GLY MET VAL GLY MET GLY VAL SER CYS THR GLY GLY SEQRES 34 A 559 GLY SER GLY GLY GLY SER GLY GLY GLY SER MET ASN CYS SEQRES 35 A 559 PRO LYS ILE VAL GLN GLN LEU GLY SER ASP VAL LEU LEU SEQRES 36 A 559 PRO LEU THR HIS GLU ARG ILE ASN THR SER MET ASN LYS SEQRES 37 A 559 SER ILE HIS ILE VAL VAL THR MET ALA LYS SER LEU GLU SEQRES 38 A 559 ASN SER VAL GLU ASN LYS ILE VAL SER LEU ASP PRO SER SEQRES 39 A 559 GLU ALA GLY PRO PRO ARG TYR LEU LYS ASP ARG TYR ARG SEQRES 40 A 559 PHE TYR LEU GLU HIS LEU SER LEU ALA ILE TYR GLU SER SEQRES 41 A 559 THR LYS LYS ASP GLU GLY TRP TYR PHE MET THR LEU GLU SEQRES 42 A 559 LYS ASN ILE SER VAL GLN ARG PHE CYS LEU HIS LEU LYS SEQRES 43 A 559 LEU TYR GLU GLN GLY THR LYS HIS HIS HIS HIS HIS HIS MODRES 3ALW ASN A 215 ASN GLYCOSYLATION SITE MODRES 3ALW ASN A 200 ASN GLYCOSYLATION SITE HET NAG A 801 14 HET NAG A 901 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) HELIX 1 1 SER A 204 GLY A 211 1 8 HELIX 2 2 ASP A 374 ARG A 377 5 4 HELIX 3 3 MET A 378 CYS A 386 1 9 HELIX 4 4 ILE A 390 GLU A 395 1 6 HELIX 5 5 PRO A 401 ASN A 405 5 5 HELIX 6 6 LEU A 100 LEU A 103 5 4 SHEET 1 A 6 GLY A 561 TRP A 573 0 SHEET 2 A 6 LYS A 576 ASP A 587 -1 O PHE A 582 N GLN A 567 SHEET 3 A 6 HIS A 593 SER A 605 -1 O HIS A 596 N CYS A 583 SHEET 4 A 6 THR A 192 SER A 199 -1 N GLN A 197 O GLY A 601 SHEET 5 A 6 VAL A 128 LYS A 136 -1 O ARG A 130 N THR A 192 SHEET 6 A 6 LYS A 34 VAL A 36 1 N ILE A 35 O LYS A 136 SHEET 1 B 8 GLY A 561 TRP A 573 0 SHEET 2 B 8 LYS A 576 ASP A 587 -1 O PHE A 582 N GLN A 567 SHEET 3 B 8 HIS A 593 SER A 605 -1 O HIS A 596 N CYS A 583 SHEET 4 B 8 THR A 192 SER A 199 -1 N GLN A 197 O GLY A 601 SHEET 5 B 8 VAL A 128 LYS A 136 -1 O ARG A 130 N THR A 192 SHEET 6 B 8 GLY A 116 GLU A 123 -1 N LEU A 122 O GLN A 129 SHEET 7 B 8 HIS A 61 ALA A 67 -1 N VAL A 63 O THR A 121 SHEET 8 B 8 ASN A 76 LEU A 81 -1 O ASN A 76 N MET A 66 SHEET 1 C 5 SER A 202 LEU A 203 0 SHEET 2 C 5 VAL A 269 GLN A 278 1 O MET A 272 N LEU A 203 SHEET 3 C 5 ARG A 253 ARG A 261 -1 N VAL A 259 O HIS A 271 SHEET 4 C 5 MET A 227 TYR A 232 -1 N GLY A 230 O GLU A 256 SHEET 5 C 5 VAL A 220 SER A 224 -1 N SER A 224 O MET A 227 SHEET 1 D10 SER A 305 THR A 307 0 SHEET 2 D10 ILE A 346 TYR A 350 -1 O LEU A 349 N ILE A 306 SHEET 3 D10 VAL A 367 ARG A 371 -1 O PRO A 368 N TYR A 350 SHEET 4 D10 SER A 409 ASP A 416 -1 O GLY A 411 N VAL A 367 SHEET 5 D10 GLN A 362 LYS A 364 -1 N ALA A 363 O VAL A 415 SHEET 6 D10 ARG A 355 ALA A 359 -1 N ALA A 359 O GLN A 362 SHEET 7 D10 MET A 288 GLY A 292 1 N LEU A 291 O ILE A 358 SHEET 8 D10 LYS A 295 CYS A 300 -1 O ALA A 297 N ALA A 290 SHEET 9 D10 GLN A 320 GLY A 325 -1 O LEU A 324 N LEU A 296 SHEET 10 D10 MET A 333 SER A 335 -1 O SER A 335 N LEU A 321 SHEET 1 E 6 SER A 305 THR A 307 0 SHEET 2 E 6 ILE A 346 TYR A 350 -1 O LEU A 349 N ILE A 306 SHEET 3 E 6 VAL A 367 ARG A 371 -1 O PRO A 368 N TYR A 350 SHEET 4 E 6 SER A 409 ASP A 416 -1 O GLY A 411 N VAL A 367 SHEET 5 E 6 ILE A 425 GLY A 430 -1 O LYS A 426 N SER A 414 SHEET 6 E 6 LEU A 339 SER A 340 1 N SER A 340 O ILE A 425 SHEET 1 F 4 ASP A 442 LYS A 445 0 SHEET 2 F 4 VAL A 451 ILE A 456 -1 O TRP A 453 N TYR A 444 SHEET 3 F 4 VAL A 466 GLU A 471 -1 O LEU A 470 N TYR A 452 SHEET 4 F 4 LYS A 477 LEU A 482 -1 O LYS A 477 N GLU A 471 SHEET 1 G 2 THR A 484 VAL A 485 0 SHEET 2 G 2 ALA A 496 PRO A 497 -1 O ALA A 496 N VAL A 485 SHEET 1 H 4 VAL A 508 SER A 511 0 SHEET 2 H 4 ALA A 527 ASP A 530 -1 O TYR A 529 N LEU A 510 SHEET 3 H 4 ALA A 537 TYR A 540 -1 O VAL A 539 N THR A 528 SHEET 4 H 4 TYR A 553 ARG A 556 -1 O PHE A 555 N VAL A 538 SHEET 1 I 2 VAL A 515 ILE A 516 0 SHEET 2 I 2 TYR A 524 VAL A 525 -1 O VAL A 525 N VAL A 515 SHEET 1 J 3 LEU A 44 LEU A 45 0 SHEET 2 J 3 LEU A 105 ILE A 107 -1 O LEU A 105 N LEU A 45 SHEET 3 J 3 TYR A 96 PHE A 98 -1 N ARG A 97 O ALA A 106 SSBOND 1 CYS A 32 CYS A 132 1555 1555 2.03 SSBOND 2 CYS A 188 CYS A 606 1555 1555 2.03 SSBOND 3 CYS A 287 CYS A 300 1555 1555 2.04 SSBOND 4 CYS A 381 CYS A 494 1555 1555 2.03 SSBOND 5 CYS A 386 CYS A 394 1555 1555 2.03 SSBOND 6 CYS A 570 CYS A 579 1555 1555 2.04 LINK ND2 ASN A 200 C1 NAG A 801 1555 1555 1.46 LINK ND2 ASN A 215 C1 NAG A 901 1555 1555 1.45 CRYST1 209.912 209.912 180.538 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004764 0.002750 0.000000 0.00000 SCALE2 0.000000 0.005501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005539 0.00000