data_3AM1 # _entry.id 3AM1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3AM1 pdb_00003am1 10.2210/pdb3am1/pdb NDB NA0683 ? ? RCSB RCSB029416 ? ? WWPDB D_1000029416 ? ? # _pdbx_database_status.entry_id 3AM1 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-08-11 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Araiso, Y.' 1 'Ishitani, R.' 2 'Nureki, O.' 3 # _citation.id primary _citation.title 'C-terminal domain of archaeal O-phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNA(Sec)' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 1034 _citation.page_last 1041 _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20870747 _citation.pdbx_database_id_DOI 10.1093/nar/gkq845 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sherrer, R.L.' 1 ? primary 'Araiso, Y.' 2 ? primary 'Aldag, C.' 3 ? primary 'Ishitani, R.' 4 ? primary 'Ho, J.M.L.' 5 ? primary 'Soll, D.' 6 ? primary 'Nureki, O.' 7 ? # _cell.length_a 46.749 _cell.length_b 46.749 _cell.length_c 459.712 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3AM1 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 1 2' _symmetry.entry_id 3AM1 _symmetry.Int_Tables_number 151 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'L-seryl-tRNA(Sec) kinase' 31009.137 1 2.7.1.164 ? ? ? 2 polymer syn 'ASL-truncated tRNA' 26191.539 1 ? ? ? ? 3 non-polymer syn "ADENOSINE-5'-TRIPHOSPHATE" 507.181 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 7 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'O-phosphoseryl-tRNA(Sec) kinase, PSTK' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKNYWVIVDDT NYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDF NEIAKKLIEKSKEIPKFYVLEENKNKNNNISDKIDKETRKIVSEYIKSKKLDKDKIKEVVELRKEFLKKIKKMEEVDADR VLKEFKDLLNSYLEHHHHHH ; ;MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKNYWVIVDDT NYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDF NEIAKKLIEKSKEIPKFYVLEENKNKNNNISDKIDKETRKIVSEYIKSKKLDKDKIKEVVELRKEFLKKIKKMEEVDADR VLKEFKDLLNSYLEHHHHHH ; A ? 2 polyribonucleotide no no ;GGCGCGGGGUACCGGGCUUGGUAGCCCGGGGCUUCGGCCGAGGGCGAGAGCCCUCGGGGUUCGAUUCCCCCCCUGCGCCG C ; ;GGCGCGGGGUACCGGGCUUGGUAGCCCGGGGCUUCGGCCGAGGGCGAGAGCCCUCGGGGUUCGAUUCCCCCCCUGCGCCG C ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 ASP n 1 4 ILE n 1 5 MET n 1 6 LEU n 1 7 ILE n 1 8 ILE n 1 9 LEU n 1 10 THR n 1 11 GLY n 1 12 LEU n 1 13 PRO n 1 14 GLY n 1 15 VAL n 1 16 GLY n 1 17 LYS n 1 18 SER n 1 19 THR n 1 20 PHE n 1 21 SER n 1 22 LYS n 1 23 ASN n 1 24 LEU n 1 25 ALA n 1 26 LYS n 1 27 ILE n 1 28 LEU n 1 29 SER n 1 30 LYS n 1 31 ASN n 1 32 ASN n 1 33 ILE n 1 34 ASP n 1 35 VAL n 1 36 ILE n 1 37 VAL n 1 38 LEU n 1 39 GLY n 1 40 SER n 1 41 ASP n 1 42 LEU n 1 43 ILE n 1 44 ARG n 1 45 GLU n 1 46 SER n 1 47 PHE n 1 48 PRO n 1 49 VAL n 1 50 TRP n 1 51 LYS n 1 52 GLU n 1 53 LYS n 1 54 TYR n 1 55 GLU n 1 56 GLU n 1 57 PHE n 1 58 ILE n 1 59 LYS n 1 60 LYS n 1 61 SER n 1 62 THR n 1 63 TYR n 1 64 ARG n 1 65 LEU n 1 66 ILE n 1 67 ASP n 1 68 SER n 1 69 ALA n 1 70 LEU n 1 71 LYS n 1 72 ASN n 1 73 TYR n 1 74 TRP n 1 75 VAL n 1 76 ILE n 1 77 VAL n 1 78 ASP n 1 79 ASP n 1 80 THR n 1 81 ASN n 1 82 TYR n 1 83 TYR n 1 84 ASN n 1 85 SER n 1 86 MET n 1 87 ARG n 1 88 ARG n 1 89 ASP n 1 90 LEU n 1 91 ILE n 1 92 ASN n 1 93 ILE n 1 94 ALA n 1 95 LYS n 1 96 LYS n 1 97 TYR n 1 98 ASN n 1 99 LYS n 1 100 ASN n 1 101 TYR n 1 102 ALA n 1 103 ILE n 1 104 ILE n 1 105 TYR n 1 106 LEU n 1 107 LYS n 1 108 ALA n 1 109 SER n 1 110 LEU n 1 111 ASP n 1 112 VAL n 1 113 LEU n 1 114 ILE n 1 115 ARG n 1 116 ARG n 1 117 ASN n 1 118 ILE n 1 119 GLU n 1 120 ARG n 1 121 GLY n 1 122 GLU n 1 123 LYS n 1 124 ILE n 1 125 PRO n 1 126 ASN n 1 127 GLU n 1 128 VAL n 1 129 ILE n 1 130 LYS n 1 131 LYS n 1 132 MET n 1 133 TYR n 1 134 GLU n 1 135 LYS n 1 136 PHE n 1 137 ASP n 1 138 GLU n 1 139 PRO n 1 140 GLY n 1 141 LYS n 1 142 LYS n 1 143 TYR n 1 144 LYS n 1 145 TRP n 1 146 ASP n 1 147 GLU n 1 148 PRO n 1 149 PHE n 1 150 LEU n 1 151 ILE n 1 152 ILE n 1 153 ASP n 1 154 THR n 1 155 THR n 1 156 LYS n 1 157 ASP n 1 158 ILE n 1 159 ASP n 1 160 PHE n 1 161 ASN n 1 162 GLU n 1 163 ILE n 1 164 ALA n 1 165 LYS n 1 166 LYS n 1 167 LEU n 1 168 ILE n 1 169 GLU n 1 170 LYS n 1 171 SER n 1 172 LYS n 1 173 GLU n 1 174 ILE n 1 175 PRO n 1 176 LYS n 1 177 PHE n 1 178 TYR n 1 179 VAL n 1 180 LEU n 1 181 GLU n 1 182 GLU n 1 183 ASN n 1 184 LYS n 1 185 ASN n 1 186 LYS n 1 187 ASN n 1 188 ASN n 1 189 ASN n 1 190 ILE n 1 191 SER n 1 192 ASP n 1 193 LYS n 1 194 ILE n 1 195 ASP n 1 196 LYS n 1 197 GLU n 1 198 THR n 1 199 ARG n 1 200 LYS n 1 201 ILE n 1 202 VAL n 1 203 SER n 1 204 GLU n 1 205 TYR n 1 206 ILE n 1 207 LYS n 1 208 SER n 1 209 LYS n 1 210 LYS n 1 211 LEU n 1 212 ASP n 1 213 LYS n 1 214 ASP n 1 215 LYS n 1 216 ILE n 1 217 LYS n 1 218 GLU n 1 219 VAL n 1 220 VAL n 1 221 GLU n 1 222 LEU n 1 223 ARG n 1 224 LYS n 1 225 GLU n 1 226 PHE n 1 227 LEU n 1 228 LYS n 1 229 LYS n 1 230 ILE n 1 231 LYS n 1 232 LYS n 1 233 MET n 1 234 GLU n 1 235 GLU n 1 236 VAL n 1 237 ASP n 1 238 ALA n 1 239 ASP n 1 240 ARG n 1 241 VAL n 1 242 LEU n 1 243 LYS n 1 244 GLU n 1 245 PHE n 1 246 LYS n 1 247 ASP n 1 248 LEU n 1 249 LEU n 1 250 ASN n 1 251 SER n 1 252 TYR n 1 253 LEU n 1 254 GLU n 1 255 HIS n 1 256 HIS n 1 257 HIS n 1 258 HIS n 1 259 HIS n 1 260 HIS n 2 1 G n 2 2 G n 2 3 C n 2 4 G n 2 5 C n 2 6 G n 2 7 G n 2 8 G n 2 9 G n 2 10 U n 2 11 A n 2 12 C n 2 13 C n 2 14 G n 2 15 G n 2 16 G n 2 17 C n 2 18 U n 2 19 U n 2 20 G n 2 21 G n 2 22 U n 2 23 A n 2 24 G n 2 25 C n 2 26 C n 2 27 C n 2 28 G n 2 29 G n 2 30 G n 2 31 G n 2 32 C n 2 33 U n 2 34 U n 2 35 C n 2 36 G n 2 37 G n 2 38 C n 2 39 C n 2 40 G n 2 41 A n 2 42 G n 2 43 G n 2 44 G n 2 45 C n 2 46 G n 2 47 A n 2 48 G n 2 49 A n 2 50 G n 2 51 C n 2 52 C n 2 53 C n 2 54 U n 2 55 C n 2 56 G n 2 57 G n 2 58 G n 2 59 G n 2 60 U n 2 61 U n 2 62 C n 2 63 G n 2 64 A n 2 65 U n 2 66 U n 2 67 C n 2 68 C n 2 69 C n 2 70 C n 2 71 C n 2 72 C n 2 73 C n 2 74 U n 2 75 G n 2 76 C n 2 77 G n 2 78 C n 2 79 C n 2 80 G n 2 81 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Methanococcus jannaschii' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'pstK, MJ1538' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'C41(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized RNA' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PSTK_METJA Q58933 1 ;MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKNYWVIVDDTNYYN SMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIA KKLIEKSKEIPKFYVLEENKNKNNNISDKIDKETRKIVSEYIKSKKLDKDKIKEVVELRKEFLKKIKKMEEVDADRVLKE FKDLLNSY ; 1 ? 2 PDB 3AM1 3AM1 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3AM1 A 5 ? 252 ? Q58933 1 ? 248 ? 5 252 2 2 3AM1 B 1 ? 81 ? 3AM1 1 ? 81 ? 1 81 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3AM1 MET A 1 ? UNP Q58933 ? ? 'expression tag' 1 1 1 3AM1 GLY A 2 ? UNP Q58933 ? ? 'expression tag' 2 2 1 3AM1 ASP A 3 ? UNP Q58933 ? ? 'expression tag' 3 3 1 3AM1 ILE A 4 ? UNP Q58933 ? ? 'expression tag' 4 4 1 3AM1 LEU A 253 ? UNP Q58933 ? ? 'expression tag' 253 5 1 3AM1 GLU A 254 ? UNP Q58933 ? ? 'expression tag' 254 6 1 3AM1 HIS A 255 ? UNP Q58933 ? ? 'expression tag' 255 7 1 3AM1 HIS A 256 ? UNP Q58933 ? ? 'expression tag' 256 8 1 3AM1 HIS A 257 ? UNP Q58933 ? ? 'expression tag' 257 9 1 3AM1 HIS A 258 ? UNP Q58933 ? ? 'expression tag' 258 10 1 3AM1 HIS A 259 ? UNP Q58933 ? ? 'expression tag' 259 11 1 3AM1 HIS A 260 ? UNP Q58933 ? ? 'expression tag' 260 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ATP non-polymer . "ADENOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3AM1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.210 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 51.48 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;100mM phosphate buffer (pH 6.2), 0.2M NaCl, 41% PEG 200, vapor diffusion, sitting drop, temperature 293K, VAPOR DIFFUSION, SITTING DROP ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2010-07-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU # _reflns.entry_id 3AM1 _reflns.d_resolution_high 2.400 _reflns.d_resolution_low 50.000 _reflns.number_obs 22946 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_netI_over_sigmaI 25.886 _reflns.pdbx_chi_squared 1.561 _reflns.pdbx_redundancy 14.300 _reflns.percent_possible_obs 97.600 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.400 2.440 ? ? ? 0.392 ? ? 0.778 4.000 ? 935 79.400 1 1 2.440 2.490 ? ? ? 0.418 ? ? 0.857 4.700 ? 972 85.300 2 1 2.490 2.530 ? ? ? 0.397 ? ? 0.842 5.700 ? 1070 94.200 3 1 2.530 2.590 ? ? ? 0.395 ? ? 0.817 6.400 ? 1147 96.800 4 1 2.590 2.640 ? ? ? 0.409 ? ? 0.846 7.800 ? 1128 99.300 5 1 2.640 2.700 ? ? ? 0.378 ? ? 0.864 9.200 ? 1152 99.800 6 1 2.700 2.770 ? ? ? 0.368 ? ? 0.887 10.900 ? 1156 99.800 7 1 2.770 2.850 ? ? ? 0.338 ? ? 0.967 12.400 ? 1118 99.800 8 1 2.850 2.930 ? ? ? 0.289 ? ? 1.110 13.200 ? 1231 99.900 9 1 2.930 3.020 ? ? ? 0.248 ? ? 1.309 15.200 ? 1109 99.900 10 1 3.020 3.130 ? ? ? 0.209 ? ? 1.385 16.100 ? 1190 99.900 11 1 3.130 3.260 ? ? ? 0.177 ? ? 1.587 17.000 ? 1134 99.900 12 1 3.260 3.410 ? ? ? 0.164 ? ? 1.703 17.500 ? 1186 99.900 13 1 3.410 3.580 ? ? ? 0.152 ? ? 1.664 19.000 ? 1175 99.700 14 1 3.580 3.810 ? ? ? 0.122 ? ? 1.558 19.200 ? 1152 100.000 15 1 3.810 4.100 ? ? ? 0.121 ? ? 1.767 19.900 ? 1190 100.000 16 1 4.100 4.520 ? ? ? 0.119 ? ? 2.056 20.600 ? 1187 99.900 17 1 4.520 5.170 ? ? ? 0.136 ? ? 2.552 20.500 ? 1221 99.900 18 1 5.170 6.510 ? ? ? 0.117 ? ? 2.064 20.400 ? 1214 99.800 19 1 6.510 50.000 ? ? ? 0.054 ? ? 1.443 19.300 ? 1279 97.600 20 1 # _refine.entry_id 3AM1 _refine.ls_d_res_high 2.4000 _refine.ls_d_res_low 34.4630 _refine.pdbx_ls_sigma_F 0.050 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.6300 _refine.ls_number_reflns_obs 22838 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2324 _refine.ls_R_factor_R_work 0.2293 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2919 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0100 _refine.ls_number_reflns_R_free 1145 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 80.5780 _refine.solvent_model_param_bsol 56.1860 _refine.solvent_model_param_ksol 0.3580 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 7.7234 _refine.aniso_B[2][2] 7.7234 _refine.aniso_B[3][3] -15.4468 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.4100 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3A4N' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.6875 _refine.B_iso_max 244.140 _refine.B_iso_min 29.580 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1878 _refine_hist.pdbx_number_atoms_nucleic_acid 1734 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 3651 _refine_hist.d_res_high 2.4000 _refine_hist.d_res_low 34.4630 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 3876 0.006 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 5651 1.536 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 710 0.077 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 406 0.005 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 1676 20.276 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.4002 2.5094 8 84.0000 2289 . 0.4457 0.5078 . 125 . 2414 . . 'X-RAY DIFFRACTION' 2.5094 2.6417 8 97.0000 2685 . 0.3790 0.4381 . 139 . 2824 . . 'X-RAY DIFFRACTION' 2.6417 2.8071 8 100.0000 2732 . 0.3265 0.3957 . 146 . 2878 . . 'X-RAY DIFFRACTION' 2.8071 3.0237 8 100.0000 2736 . 0.2756 0.3514 . 141 . 2877 . . 'X-RAY DIFFRACTION' 3.0237 3.3278 8 100.0000 2792 . 0.2274 0.2729 . 144 . 2936 . . 'X-RAY DIFFRACTION' 3.3278 3.8088 8 100.0000 2728 . 0.1921 0.2762 . 142 . 2870 . . 'X-RAY DIFFRACTION' 3.8088 4.7966 8 100.0000 2821 . 0.1676 0.2335 . 153 . 2974 . . 'X-RAY DIFFRACTION' 4.7966 34.4668 8 100.0000 2910 . 0.2053 0.2559 . 155 . 3065 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3AM1 _struct.title 'Crystal structure of O-Phosphoseryl-tRNA kinase complexed with anticodon-stem/loop truncated tRNA(Sec)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3AM1 _struct_keywords.text 'kinase, TRANSFERASE-RNA complex' _struct_keywords.pdbx_keywords TRANSFERASE/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 16 ? ASN A 31 ? GLY A 16 ASN A 31 1 ? 16 HELX_P HELX_P2 2 SER A 40 ? GLU A 45 ? SER A 40 GLU A 45 1 ? 6 HELX_P HELX_P3 3 LYS A 53 ? LYS A 71 ? LYS A 53 LYS A 71 1 ? 19 HELX_P HELX_P4 4 TYR A 83 ? ASN A 98 ? TYR A 83 ASN A 98 1 ? 16 HELX_P HELX_P5 5 SER A 109 ? ARG A 120 ? SER A 109 ARG A 120 1 ? 12 HELX_P HELX_P6 6 PRO A 125 ? PHE A 136 ? PRO A 125 PHE A 136 1 ? 12 HELX_P HELX_P7 7 ASP A 159 ? LYS A 172 ? ASP A 159 LYS A 172 1 ? 14 HELX_P HELX_P8 8 ASN A 189 ? LYS A 210 ? ASN A 189 LYS A 210 1 ? 22 HELX_P HELX_P9 9 ASP A 212 ? LYS A 232 ? ASP A 212 LYS A 232 1 ? 21 HELX_P HELX_P10 10 ASP A 237 ? TYR A 252 ? ASP A 237 TYR A 252 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 18 OG ? ? ? 1_555 D MG . MG ? ? A SER 18 A MG 401 1_555 ? ? ? ? ? ? ? 2.410 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 79 N3 ? ? B G 1 B C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 79 O2 ? ? B G 1 B C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 79 N4 ? ? B G 1 B C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 78 N3 ? ? B G 2 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 78 O2 ? ? B G 2 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 78 N4 ? ? B G 2 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 77 N1 ? ? B C 3 B G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 77 O6 ? ? B C 3 B G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 77 N2 ? ? B C 3 B G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 76 N3 ? ? B G 4 B C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 76 O2 ? ? B G 4 B C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 76 N4 ? ? B G 4 B C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 75 N1 ? ? B C 5 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 75 O6 ? ? B C 5 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 75 N2 ? ? B C 5 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B G 6 N1 ? ? ? 1_555 B U 74 O2 ? ? B G 6 B U 74 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? B G 6 O6 ? ? ? 1_555 B U 74 N3 ? ? B G 6 B U 74 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 73 N3 ? ? B G 7 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 73 O2 ? ? B G 7 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 73 N4 ? ? B G 7 B C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 72 N3 ? ? B G 8 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 72 O2 ? ? B G 8 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 72 N4 ? ? B G 8 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 71 N3 ? ? B G 9 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 71 O2 ? ? B G 9 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 71 N4 ? ? B G 9 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 29 N1 ? ? B C 12 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 29 O6 ? ? B C 12 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 29 N2 ? ? B C 12 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 28 N1 ? ? B C 13 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 28 O6 ? ? B C 13 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 28 N2 ? ? B C 13 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B G 14 N1 ? ? ? 1_555 B C 27 N3 ? ? B G 14 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B G 14 N2 ? ? ? 1_555 B C 27 O2 ? ? B G 14 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 14 O6 ? ? ? 1_555 B C 27 N4 ? ? B G 14 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B G 15 N1 ? ? ? 1_555 B C 26 N3 ? ? B G 15 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B G 15 N2 ? ? ? 1_555 B C 26 O2 ? ? B G 15 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 15 O6 ? ? ? 1_555 B C 26 N4 ? ? B G 15 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 15 N1 ? ? ? 1_555 B C 27 N3 ? ? B G 15 B C 27 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog40 hydrog ? ? B G 16 N1 ? ? ? 1_555 B C 25 N3 ? ? B G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 16 N2 ? ? ? 1_555 B C 25 O2 ? ? B G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 16 O6 ? ? ? 1_555 B C 25 N4 ? ? B G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B C 17 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B C 17 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 17 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B U 18 N3 ? ? ? 1_555 B A 23 N1 ? ? B U 18 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B U 18 O4 ? ? ? 1_555 B A 23 N6 ? ? B U 18 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B U 19 N3 ? ? ? 1_555 B U 65 O2 ? ? B U 19 B U 65 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog49 hydrog ? ? B U 19 O2 ? ? ? 1_555 B U 65 N3 ? ? B U 19 B U 65 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog50 hydrog ? ? B G 20 N1 ? ? ? 1_555 B U 61 O2 ? ? B G 20 B U 61 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog51 hydrog ? ? B G 21 N2 ? ? ? 1_555 B U 22 O4 ? ? B G 21 B U 22 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog52 hydrog ? ? B G 21 N1 ? ? ? 1_555 B C 62 N3 ? ? B G 21 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 21 N2 ? ? ? 1_555 B C 62 O2 ? ? B G 21 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 21 O6 ? ? ? 1_555 B C 62 N4 ? ? B G 21 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B G 30 N1 ? ? ? 1_555 B C 39 N3 ? ? B G 30 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B G 30 N2 ? ? ? 1_555 B C 39 O2 ? ? B G 30 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 30 O6 ? ? ? 1_555 B C 39 N4 ? ? B G 30 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B G 31 N1 ? ? ? 1_555 B C 38 N3 ? ? B G 31 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B G 31 N2 ? ? ? 1_555 B C 38 O2 ? ? B G 31 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B G 31 O6 ? ? ? 1_555 B C 38 N4 ? ? B G 31 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 32 N3 ? ? ? 1_555 B G 37 N1 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 32 N4 ? ? ? 1_555 B G 37 O6 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B C 32 O2 ? ? ? 1_555 B G 37 N2 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 40 N1 ? ? ? 1_555 B C 55 N3 ? ? B G 40 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 40 N2 ? ? ? 1_555 B C 55 O2 ? ? B G 40 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 40 O6 ? ? ? 1_555 B C 55 N4 ? ? B G 40 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B A 41 N1 ? ? ? 1_555 B U 54 N3 ? ? B A 41 B U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B A 41 N6 ? ? ? 1_555 B U 54 O4 ? ? B A 41 B U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 42 N1 ? ? ? 1_555 B C 53 N3 ? ? B G 42 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 42 N2 ? ? ? 1_555 B C 53 O2 ? ? B G 42 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B G 42 O6 ? ? ? 1_555 B C 53 N4 ? ? B G 42 B C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B G 43 N1 ? ? ? 1_555 B C 52 N3 ? ? B G 43 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B G 43 N2 ? ? ? 1_555 B C 52 O2 ? ? B G 43 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B G 43 O6 ? ? ? 1_555 B C 52 N4 ? ? B G 43 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B G 44 N1 ? ? ? 1_555 B C 51 N3 ? ? B G 44 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B G 44 N2 ? ? ? 1_555 B C 51 O2 ? ? B G 44 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B G 44 O6 ? ? ? 1_555 B C 51 N4 ? ? B G 44 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 45 N3 ? ? ? 1_555 B G 50 N1 ? ? B C 45 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 45 N4 ? ? ? 1_555 B G 50 O6 ? ? B C 45 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 45 O2 ? ? ? 1_555 B G 50 N2 ? ? B C 45 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 46 N2 ? ? ? 1_555 B A 49 N7 ? ? B G 46 B A 49 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog82 hydrog ? ? B G 56 N1 ? ? ? 1_555 B C 70 N3 ? ? B G 56 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 56 N2 ? ? ? 1_555 B C 70 O2 ? ? B G 56 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 56 O6 ? ? ? 1_555 B C 70 N4 ? ? B G 56 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 57 N1 ? ? ? 1_555 B C 69 N3 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 57 N2 ? ? ? 1_555 B C 69 O2 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 57 O6 ? ? ? 1_555 B C 69 N4 ? ? B G 57 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B G 58 N1 ? ? ? 1_555 B C 68 N3 ? ? B G 58 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B G 58 N2 ? ? ? 1_555 B C 68 O2 ? ? B G 58 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B G 58 O6 ? ? ? 1_555 B C 68 N4 ? ? B G 58 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 59 N1 ? ? ? 1_555 B C 67 N3 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 59 N2 ? ? ? 1_555 B C 67 O2 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 59 O6 ? ? ? 1_555 B C 67 N4 ? ? B G 59 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B G 59 N1 ? ? ? 1_555 B C 68 N3 ? ? B G 59 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B G 59 N2 ? ? ? 1_555 B C 68 O2 ? ? B G 59 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 59 O6 ? ? ? 1_555 B C 68 N4 ? ? B G 59 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B U 60 N3 ? ? ? 1_555 B A 64 N7 ? ? B U 60 B A 64 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog98 hydrog ? ? B U 60 O2 ? ? ? 1_555 B A 64 N6 ? ? B U 60 B A 64 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 35 ? LEU A 38 ? VAL A 35 LEU A 38 A 2 TRP A 74 ? VAL A 77 ? TRP A 74 VAL A 77 A 3 MET A 5 ? THR A 10 ? MET A 5 THR A 10 A 4 ASN A 100 ? LYS A 107 ? ASN A 100 LYS A 107 A 5 LEU A 150 ? ASP A 153 ? LEU A 150 ASP A 153 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 36 ? N ILE A 36 O TRP A 74 ? O TRP A 74 A 2 3 O VAL A 75 ? O VAL A 75 N ILE A 7 ? N ILE A 7 A 3 4 N LEU A 6 ? N LEU A 6 O ASN A 100 ? O ASN A 100 A 4 5 N TYR A 105 ? N TYR A 105 O LEU A 150 ? O LEU A 150 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ATP 301 ? 10 'BINDING SITE FOR RESIDUE ATP A 301' AC2 Software A MG 401 ? 2 'BINDING SITE FOR RESIDUE MG A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 PRO A 13 ? PRO A 13 . ? 1_555 ? 2 AC1 10 GLY A 14 ? GLY A 14 . ? 1_555 ? 3 AC1 10 VAL A 15 ? VAL A 15 . ? 1_555 ? 4 AC1 10 GLY A 16 ? GLY A 16 . ? 1_555 ? 5 AC1 10 LYS A 17 ? LYS A 17 . ? 1_555 ? 6 AC1 10 SER A 18 ? SER A 18 . ? 1_555 ? 7 AC1 10 THR A 19 ? THR A 19 . ? 1_555 ? 8 AC1 10 ARG A 116 ? ARG A 116 . ? 1_555 ? 9 AC1 10 THR A 154 ? THR A 154 . ? 1_555 ? 10 AC1 10 MG D . ? MG A 401 . ? 1_555 ? 11 AC2 2 SER A 18 ? SER A 18 . ? 1_555 ? 12 AC2 2 ATP C . ? ATP A 301 . ? 1_555 ? # _atom_sites.entry_id 3AM1 _atom_sites.fract_transf_matrix[1][1] 0.021391 _atom_sites.fract_transf_matrix[1][2] 0.012350 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024700 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.002175 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLY 2 2 ? ? ? A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 MET 5 5 5 MET MET A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 TRP 50 50 50 TRP TRP A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 TRP 74 74 74 TRP TRP A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 MET 132 132 132 MET MET A . n A 1 133 TYR 133 133 133 TYR TYR A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 TRP 145 145 145 TRP TRP A . n A 1 146 ASP 146 146 146 ASP ASP A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 THR 155 155 155 THR THR A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 ASN 161 161 161 ASN ASN A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 LYS 170 170 170 LYS LYS A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 ILE 174 174 174 ILE ILE A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 PHE 177 177 177 PHE PHE A . n A 1 178 TYR 178 178 ? ? ? A . n A 1 179 VAL 179 179 ? ? ? A . n A 1 180 LEU 180 180 ? ? ? A . n A 1 181 GLU 181 181 ? ? ? A . n A 1 182 GLU 182 182 ? ? ? A . n A 1 183 ASN 183 183 ? ? ? A . n A 1 184 LYS 184 184 ? ? ? A . n A 1 185 ASN 185 185 ? ? ? A . n A 1 186 LYS 186 186 ? ? ? A . n A 1 187 ASN 187 187 ? ? ? A . n A 1 188 ASN 188 188 ? ? ? A . n A 1 189 ASN 189 189 189 ASN ASN A . n A 1 190 ILE 190 190 190 ILE ILE A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 ASP 192 192 192 ASP ASP A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 ASP 195 195 195 ASP ASP A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 ARG 199 199 199 ARG ARG A . n A 1 200 LYS 200 200 200 LYS LYS A . n A 1 201 ILE 201 201 201 ILE ILE A . n A 1 202 VAL 202 202 202 VAL VAL A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 GLU 204 204 204 GLU GLU A . n A 1 205 TYR 205 205 205 TYR TYR A . n A 1 206 ILE 206 206 206 ILE ILE A . n A 1 207 LYS 207 207 207 LYS LYS A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 LYS 209 209 209 LYS LYS A . n A 1 210 LYS 210 210 210 LYS LYS A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 ASP 212 212 212 ASP ASP A . n A 1 213 LYS 213 213 213 LYS LYS A . n A 1 214 ASP 214 214 214 ASP ASP A . n A 1 215 LYS 215 215 215 LYS LYS A . n A 1 216 ILE 216 216 216 ILE ILE A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 GLU 218 218 218 GLU GLU A . n A 1 219 VAL 219 219 219 VAL VAL A . n A 1 220 VAL 220 220 220 VAL VAL A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 ARG 223 223 223 ARG ARG A . n A 1 224 LYS 224 224 224 LYS LYS A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 PHE 226 226 226 PHE PHE A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 LYS 228 228 228 LYS LYS A . n A 1 229 LYS 229 229 229 LYS LYS A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 MET 233 233 ? ? ? A . n A 1 234 GLU 234 234 ? ? ? A . n A 1 235 GLU 235 235 ? ? ? A . n A 1 236 VAL 236 236 236 VAL VAL A . n A 1 237 ASP 237 237 237 ASP ASP A . n A 1 238 ALA 238 238 238 ALA ALA A . n A 1 239 ASP 239 239 239 ASP ASP A . n A 1 240 ARG 240 240 240 ARG ARG A . n A 1 241 VAL 241 241 241 VAL VAL A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 LYS 243 243 243 LYS LYS A . n A 1 244 GLU 244 244 244 GLU GLU A . n A 1 245 PHE 245 245 245 PHE PHE A . n A 1 246 LYS 246 246 246 LYS LYS A . n A 1 247 ASP 247 247 247 ASP ASP A . n A 1 248 LEU 248 248 248 LEU LEU A . n A 1 249 LEU 249 249 249 LEU LEU A . n A 1 250 ASN 250 250 250 ASN ASN A . n A 1 251 SER 251 251 251 SER SER A . n A 1 252 TYR 252 252 252 TYR TYR A . n A 1 253 LEU 253 253 ? ? ? A . n A 1 254 GLU 254 254 ? ? ? A . n A 1 255 HIS 255 255 ? ? ? A . n A 1 256 HIS 256 256 ? ? ? A . n A 1 257 HIS 257 257 ? ? ? A . n A 1 258 HIS 258 258 ? ? ? A . n A 1 259 HIS 259 259 ? ? ? A . n A 1 260 HIS 260 260 ? ? ? A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 C 3 3 3 C C B . n B 2 4 G 4 4 4 G G B . n B 2 5 C 5 5 5 C C B . n B 2 6 G 6 6 6 G G B . n B 2 7 G 7 7 7 G G B . n B 2 8 G 8 8 8 G G B . n B 2 9 G 9 9 9 G G B . n B 2 10 U 10 10 10 U U B . n B 2 11 A 11 11 11 A A B . n B 2 12 C 12 12 12 C C B . n B 2 13 C 13 13 13 C C B . n B 2 14 G 14 14 14 G G B . n B 2 15 G 15 15 15 G G B . n B 2 16 G 16 16 16 G G B . n B 2 17 C 17 17 17 C C B . n B 2 18 U 18 18 18 U U B . n B 2 19 U 19 19 19 U U B . n B 2 20 G 20 20 20 G G B . n B 2 21 G 21 21 21 G G B . n B 2 22 U 22 22 22 U U B . n B 2 23 A 23 23 23 A A B . n B 2 24 G 24 24 24 G G B . n B 2 25 C 25 25 25 C C B . n B 2 26 C 26 26 26 C C B . n B 2 27 C 27 27 27 C C B . n B 2 28 G 28 28 28 G G B . n B 2 29 G 29 29 29 G G B . n B 2 30 G 30 30 30 G G B . n B 2 31 G 31 31 31 G G B . n B 2 32 C 32 32 32 C C B . n B 2 33 U 33 33 33 U U B . n B 2 34 U 34 34 34 U U B . n B 2 35 C 35 35 35 C C B . n B 2 36 G 36 36 36 G G B . n B 2 37 G 37 37 37 G G B . n B 2 38 C 38 38 38 C C B . n B 2 39 C 39 39 39 C C B . n B 2 40 G 40 40 40 G G B . n B 2 41 A 41 41 41 A A B . n B 2 42 G 42 42 42 G G B . n B 2 43 G 43 43 43 G G B . n B 2 44 G 44 44 44 G G B . n B 2 45 C 45 45 45 C C B . n B 2 46 G 46 46 46 G G B . n B 2 47 A 47 47 47 A A B . n B 2 48 G 48 48 48 G G B . n B 2 49 A 49 49 49 A A B . n B 2 50 G 50 50 50 G G B . n B 2 51 C 51 51 51 C C B . n B 2 52 C 52 52 52 C C B . n B 2 53 C 53 53 53 C C B . n B 2 54 U 54 54 54 U U B . n B 2 55 C 55 55 55 C C B . n B 2 56 G 56 56 56 G G B . n B 2 57 G 57 57 57 G G B . n B 2 58 G 58 58 58 G G B . n B 2 59 G 59 59 59 G G B . n B 2 60 U 60 60 60 U U B . n B 2 61 U 61 61 61 U U B . n B 2 62 C 62 62 62 C C B . n B 2 63 G 63 63 63 G G B . n B 2 64 A 64 64 64 A A B . n B 2 65 U 65 65 65 U U B . n B 2 66 U 66 66 66 U U B . n B 2 67 C 67 67 67 C C B . n B 2 68 C 68 68 68 C C B . n B 2 69 C 69 69 69 C C B . n B 2 70 C 70 70 70 C C B . n B 2 71 C 71 71 71 C C B . n B 2 72 C 72 72 72 C C B . n B 2 73 C 73 73 73 C C B . n B 2 74 U 74 74 74 U U B . n B 2 75 G 75 75 75 G G B . n B 2 76 C 76 76 76 C C B . n B 2 77 G 77 77 77 G G B . n B 2 78 C 78 78 78 C C B . n B 2 79 C 79 79 79 C C B . n B 2 80 G 80 80 80 G G B . n B 2 81 C 81 81 81 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP 1 301 301 ATP ATP A . D 4 MG 1 401 401 MG MG A . E 5 HOH 1 261 1 HOH HOH A . E 5 HOH 2 262 6 HOH HOH A . E 5 HOH 3 263 7 HOH HOH A . F 5 HOH 1 82 2 HOH HOH B . F 5 HOH 2 83 3 HOH HOH B . F 5 HOH 3 84 4 HOH HOH B . F 5 HOH 4 85 8 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7100 ? 1 MORE -48 ? 1 'SSA (A^2)' 48010 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 -x+y,y,-z+1/3 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 153.2373333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-01-22 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 2.0036 28.5807 61.0978 0.6710 -0.0274 0.3826 -0.1535 0.0331 0.0889 0.6809 0.0437 0.4774 -0.0253 -0.2496 0.1416 -0.0070 0.1490 -0.0430 0.5590 0.1521 -0.3329 -0.2537 0.2717 -0.1335 'X-RAY DIFFRACTION' 2 ? refined 6.6939 -15.3754 18.5734 0.7452 -0.3624 0.3695 0.0704 0.0218 0.1116 0.3932 0.0388 0.1158 -0.0815 -0.1373 -0.0050 0.0575 -0.1613 0.0590 0.0073 -0.3218 -0.3030 -0.5583 0.0983 -0.0530 'X-RAY DIFFRACTION' 3 ? refined 8.3988 6.6848 26.3270 0.5235 0.3309 0.2545 -0.0016 0.0655 -0.0154 0.7160 1.0724 0.1878 -0.1472 0.1027 0.2771 0.0133 -0.1291 0.0392 0.1570 0.1037 0.1804 0.0510 -0.3329 -0.0195 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 3 A 177 'chain A and resid 3:177' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 189 A 252 'chain A and resid 189:252' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B 1 B 81 'chain B' ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHENIX 1.6_289 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B G 2 ? ? "O3'" B G 2 ? ? P B C 3 ? ? 110.97 119.70 -8.73 1.20 Y 2 1 "O4'" B C 3 ? ? "C1'" B C 3 ? ? N1 B C 3 ? ? 113.10 108.50 4.60 0.70 N 3 1 C5 B G 6 ? ? C6 B G 6 ? ? N1 B G 6 ? ? 108.30 111.50 -3.20 0.50 N 4 1 "C3'" B G 9 ? ? "O3'" B G 9 ? ? P B U 10 ? ? 128.35 119.70 8.65 1.20 Y 5 1 N9 B G 14 ? ? "C1'" B G 14 ? ? "C2'" B G 14 ? ? 103.53 112.00 -8.47 1.10 N 6 1 "C3'" B G 14 ? ? "O3'" B G 14 ? ? P B G 15 ? ? 109.04 119.70 -10.66 1.20 Y 7 1 "O4'" B U 34 ? ? "C1'" B U 34 ? ? N1 B U 34 ? ? 102.42 108.20 -5.78 0.80 N 8 1 "C3'" B C 39 ? ? "O3'" B C 39 ? ? P B G 40 ? ? 128.87 119.70 9.17 1.20 Y 9 1 N9 B G 46 ? ? "C1'" B G 46 ? ? "C2'" B G 46 ? ? 105.33 112.00 -6.67 1.10 N 10 1 "C3'" B A 47 ? ? "O3'" B A 47 ? ? P B G 48 ? ? 127.05 119.70 7.35 1.20 Y 11 1 "C3'" B G 48 ? ? "C2'" B G 48 ? ? "C1'" B G 48 ? ? 106.54 101.50 5.04 0.80 N 12 1 N1 B C 55 ? ? "C1'" B C 55 ? ? "C2'" B C 55 ? ? 102.77 112.00 -9.23 1.10 N 13 1 "O4'" B C 55 ? ? "C1'" B C 55 ? ? N1 B C 55 ? ? 116.91 108.50 8.41 0.70 N 14 1 N1 B C 62 ? ? "C1'" B C 62 ? ? "C2'" B C 62 ? ? 97.17 112.00 -14.83 1.10 N 15 1 "C3'" B C 62 ? ? "O3'" B C 62 ? ? P B G 63 ? ? 107.78 119.70 -11.92 1.20 Y 16 1 "O4'" B U 65 ? ? "C1'" B U 65 ? ? N1 B U 65 ? ? 113.33 108.50 4.83 0.70 N 17 1 P B U 74 ? ? "O5'" B U 74 ? ? "C5'" B U 74 ? ? 110.79 120.90 -10.11 1.60 N 18 1 "O4'" B U 74 ? ? "C1'" B U 74 ? ? N1 B U 74 ? ? 102.66 108.20 -5.54 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 122 ? ? 36.89 54.43 2 1 ASP A 157 ? ? -43.00 171.82 3 1 LYS A 207 ? ? -68.26 11.79 4 1 SER A 208 ? ? -131.92 -42.81 5 1 ASP A 237 ? ? -152.24 74.01 6 1 ALA A 238 ? ? 2.15 -74.67 7 1 SER A 251 ? ? -58.50 -72.14 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 26 ? CG ? A LYS 26 CG 2 1 Y 1 A LYS 26 ? CD ? A LYS 26 CD 3 1 Y 1 A LYS 26 ? CE ? A LYS 26 CE 4 1 Y 1 A LYS 26 ? NZ ? A LYS 26 NZ 5 1 Y 1 A LYS 30 ? CG ? A LYS 30 CG 6 1 Y 1 A LYS 30 ? CD ? A LYS 30 CD 7 1 Y 1 A LYS 30 ? CE ? A LYS 30 CE 8 1 Y 1 A LYS 30 ? NZ ? A LYS 30 NZ 9 1 Y 1 A LYS 60 ? CD ? A LYS 60 CD 10 1 Y 1 A LYS 60 ? CE ? A LYS 60 CE 11 1 Y 1 A LYS 60 ? NZ ? A LYS 60 NZ 12 1 Y 1 A ARG 120 ? CG ? A ARG 120 CG 13 1 Y 1 A ARG 120 ? CD ? A ARG 120 CD 14 1 Y 1 A ARG 120 ? NE ? A ARG 120 NE 15 1 Y 1 A ARG 120 ? CZ ? A ARG 120 CZ 16 1 Y 1 A ARG 120 ? NH1 ? A ARG 120 NH1 17 1 Y 1 A ARG 120 ? NH2 ? A ARG 120 NH2 18 1 Y 1 A LYS 123 ? CG ? A LYS 123 CG 19 1 Y 1 A LYS 123 ? CD ? A LYS 123 CD 20 1 Y 1 A LYS 123 ? CE ? A LYS 123 CE 21 1 Y 1 A LYS 123 ? NZ ? A LYS 123 NZ 22 1 Y 1 A LYS 130 ? CD ? A LYS 130 CD 23 1 Y 1 A LYS 130 ? CE ? A LYS 130 CE 24 1 Y 1 A LYS 130 ? NZ ? A LYS 130 NZ 25 1 Y 1 A LYS 131 ? CG ? A LYS 131 CG 26 1 Y 1 A LYS 131 ? CD ? A LYS 131 CD 27 1 Y 1 A LYS 131 ? CE ? A LYS 131 CE 28 1 Y 1 A LYS 131 ? NZ ? A LYS 131 NZ 29 1 Y 1 A GLU 134 ? CG ? A GLU 134 CG 30 1 Y 1 A GLU 134 ? CD ? A GLU 134 CD 31 1 Y 1 A GLU 134 ? OE1 ? A GLU 134 OE1 32 1 Y 1 A GLU 134 ? OE2 ? A GLU 134 OE2 33 1 Y 1 A LYS 135 ? CG ? A LYS 135 CG 34 1 Y 1 A LYS 135 ? CD ? A LYS 135 CD 35 1 Y 1 A LYS 135 ? CE ? A LYS 135 CE 36 1 Y 1 A LYS 135 ? NZ ? A LYS 135 NZ 37 1 Y 1 A LYS 156 ? CG ? A LYS 156 CG 38 1 Y 1 A LYS 156 ? CD ? A LYS 156 CD 39 1 Y 1 A LYS 156 ? CE ? A LYS 156 CE 40 1 Y 1 A LYS 156 ? NZ ? A LYS 156 NZ 41 1 Y 1 A LYS 165 ? CG ? A LYS 165 CG 42 1 Y 1 A LYS 165 ? CD ? A LYS 165 CD 43 1 Y 1 A LYS 165 ? CE ? A LYS 165 CE 44 1 Y 1 A LYS 165 ? NZ ? A LYS 165 NZ 45 1 Y 1 A LYS 166 ? CG ? A LYS 166 CG 46 1 Y 1 A LYS 166 ? CD ? A LYS 166 CD 47 1 Y 1 A LYS 166 ? CE ? A LYS 166 CE 48 1 Y 1 A LYS 166 ? NZ ? A LYS 166 NZ 49 1 Y 1 A LYS 176 ? NZ ? A LYS 176 NZ 50 1 Y 1 A LYS 193 ? CG ? A LYS 193 CG 51 1 Y 1 A LYS 193 ? CD ? A LYS 193 CD 52 1 Y 1 A LYS 193 ? CE ? A LYS 193 CE 53 1 Y 1 A LYS 193 ? NZ ? A LYS 193 NZ 54 1 Y 1 A LYS 207 ? CG ? A LYS 207 CG 55 1 Y 1 A LYS 207 ? CD ? A LYS 207 CD 56 1 Y 1 A LYS 207 ? CE ? A LYS 207 CE 57 1 Y 1 A LYS 207 ? NZ ? A LYS 207 NZ 58 1 Y 1 A LYS 209 ? CD ? A LYS 209 CD 59 1 Y 1 A LYS 209 ? CE ? A LYS 209 CE 60 1 Y 1 A LYS 209 ? NZ ? A LYS 209 NZ 61 1 Y 1 A LYS 210 ? CG ? A LYS 210 CG 62 1 Y 1 A LYS 210 ? CD ? A LYS 210 CD 63 1 Y 1 A LYS 210 ? CE ? A LYS 210 CE 64 1 Y 1 A LYS 210 ? NZ ? A LYS 210 NZ 65 1 Y 1 A LYS 213 ? CG ? A LYS 213 CG 66 1 Y 1 A LYS 213 ? CD ? A LYS 213 CD 67 1 Y 1 A LYS 213 ? CE ? A LYS 213 CE 68 1 Y 1 A LYS 213 ? NZ ? A LYS 213 NZ 69 1 Y 1 A LYS 215 ? CG ? A LYS 215 CG 70 1 Y 1 A LYS 215 ? CD ? A LYS 215 CD 71 1 Y 1 A LYS 215 ? CE ? A LYS 215 CE 72 1 Y 1 A LYS 215 ? NZ ? A LYS 215 NZ 73 1 Y 1 A LYS 217 ? CG ? A LYS 217 CG 74 1 Y 1 A LYS 217 ? CD ? A LYS 217 CD 75 1 Y 1 A LYS 217 ? CE ? A LYS 217 CE 76 1 Y 1 A LYS 217 ? NZ ? A LYS 217 NZ 77 1 Y 1 A LYS 224 ? CG ? A LYS 224 CG 78 1 Y 1 A LYS 224 ? CD ? A LYS 224 CD 79 1 Y 1 A LYS 224 ? CE ? A LYS 224 CE 80 1 Y 1 A LYS 224 ? NZ ? A LYS 224 NZ 81 1 Y 1 A LYS 228 ? CD ? A LYS 228 CD 82 1 Y 1 A LYS 228 ? CE ? A LYS 228 CE 83 1 Y 1 A LYS 228 ? NZ ? A LYS 228 NZ 84 1 Y 1 A LYS 231 ? CG ? A LYS 231 CG 85 1 Y 1 A LYS 231 ? CD ? A LYS 231 CD 86 1 Y 1 A LYS 231 ? CE ? A LYS 231 CE 87 1 Y 1 A LYS 231 ? NZ ? A LYS 231 NZ 88 1 Y 1 A LYS 232 ? CG ? A LYS 232 CG 89 1 Y 1 A LYS 232 ? CD ? A LYS 232 CD 90 1 Y 1 A LYS 232 ? CE ? A LYS 232 CE 91 1 Y 1 A LYS 232 ? NZ ? A LYS 232 NZ 92 1 Y 1 A LYS 243 ? CG ? A LYS 243 CG 93 1 Y 1 A LYS 243 ? CD ? A LYS 243 CD 94 1 Y 1 A LYS 243 ? CE ? A LYS 243 CE 95 1 Y 1 A LYS 243 ? NZ ? A LYS 243 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLY 2 ? A GLY 2 3 1 Y 1 A TYR 178 ? A TYR 178 4 1 Y 1 A VAL 179 ? A VAL 179 5 1 Y 1 A LEU 180 ? A LEU 180 6 1 Y 1 A GLU 181 ? A GLU 181 7 1 Y 1 A GLU 182 ? A GLU 182 8 1 Y 1 A ASN 183 ? A ASN 183 9 1 Y 1 A LYS 184 ? A LYS 184 10 1 Y 1 A ASN 185 ? A ASN 185 11 1 Y 1 A LYS 186 ? A LYS 186 12 1 Y 1 A ASN 187 ? A ASN 187 13 1 Y 1 A ASN 188 ? A ASN 188 14 1 Y 1 A MET 233 ? A MET 233 15 1 Y 1 A GLU 234 ? A GLU 234 16 1 Y 1 A GLU 235 ? A GLU 235 17 1 Y 1 A LEU 253 ? A LEU 253 18 1 Y 1 A GLU 254 ? A GLU 254 19 1 Y 1 A HIS 255 ? A HIS 255 20 1 Y 1 A HIS 256 ? A HIS 256 21 1 Y 1 A HIS 257 ? A HIS 257 22 1 Y 1 A HIS 258 ? A HIS 258 23 1 Y 1 A HIS 259 ? A HIS 259 24 1 Y 1 A HIS 260 ? A HIS 260 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 ATP PG P N N 111 ATP O1G O N N 112 ATP O2G O N N 113 ATP O3G O N N 114 ATP PB P N R 115 ATP O1B O N N 116 ATP O2B O N N 117 ATP O3B O N N 118 ATP PA P N R 119 ATP O1A O N N 120 ATP O2A O N N 121 ATP O3A O N N 122 ATP "O5'" O N N 123 ATP "C5'" C N N 124 ATP "C4'" C N R 125 ATP "O4'" O N N 126 ATP "C3'" C N S 127 ATP "O3'" O N N 128 ATP "C2'" C N R 129 ATP "O2'" O N N 130 ATP "C1'" C N R 131 ATP N9 N Y N 132 ATP C8 C Y N 133 ATP N7 N Y N 134 ATP C5 C Y N 135 ATP C6 C Y N 136 ATP N6 N N N 137 ATP N1 N Y N 138 ATP C2 C Y N 139 ATP N3 N Y N 140 ATP C4 C Y N 141 ATP HOG2 H N N 142 ATP HOG3 H N N 143 ATP HOB2 H N N 144 ATP HOA2 H N N 145 ATP "H5'1" H N N 146 ATP "H5'2" H N N 147 ATP "H4'" H N N 148 ATP "H3'" H N N 149 ATP "HO3'" H N N 150 ATP "H2'" H N N 151 ATP "HO2'" H N N 152 ATP "H1'" H N N 153 ATP H8 H N N 154 ATP HN61 H N N 155 ATP HN62 H N N 156 ATP H2 H N N 157 C OP3 O N N 158 C P P N N 159 C OP1 O N N 160 C OP2 O N N 161 C "O5'" O N N 162 C "C5'" C N N 163 C "C4'" C N R 164 C "O4'" O N N 165 C "C3'" C N S 166 C "O3'" O N N 167 C "C2'" C N R 168 C "O2'" O N N 169 C "C1'" C N R 170 C N1 N N N 171 C C2 C N N 172 C O2 O N N 173 C N3 N N N 174 C C4 C N N 175 C N4 N N N 176 C C5 C N N 177 C C6 C N N 178 C HOP3 H N N 179 C HOP2 H N N 180 C "H5'" H N N 181 C "H5''" H N N 182 C "H4'" H N N 183 C "H3'" H N N 184 C "HO3'" H N N 185 C "H2'" H N N 186 C "HO2'" H N N 187 C "H1'" H N N 188 C H41 H N N 189 C H42 H N N 190 C H5 H N N 191 C H6 H N N 192 G OP3 O N N 193 G P P N N 194 G OP1 O N N 195 G OP2 O N N 196 G "O5'" O N N 197 G "C5'" C N N 198 G "C4'" C N R 199 G "O4'" O N N 200 G "C3'" C N S 201 G "O3'" O N N 202 G "C2'" C N R 203 G "O2'" O N N 204 G "C1'" C N R 205 G N9 N Y N 206 G C8 C Y N 207 G N7 N Y N 208 G C5 C Y N 209 G C6 C N N 210 G O6 O N N 211 G N1 N N N 212 G C2 C N N 213 G N2 N N N 214 G N3 N N N 215 G C4 C Y N 216 G HOP3 H N N 217 G HOP2 H N N 218 G "H5'" H N N 219 G "H5''" H N N 220 G "H4'" H N N 221 G "H3'" H N N 222 G "HO3'" H N N 223 G "H2'" H N N 224 G "HO2'" H N N 225 G "H1'" H N N 226 G H8 H N N 227 G H1 H N N 228 G H21 H N N 229 G H22 H N N 230 GLU N N N N 231 GLU CA C N S 232 GLU C C N N 233 GLU O O N N 234 GLU CB C N N 235 GLU CG C N N 236 GLU CD C N N 237 GLU OE1 O N N 238 GLU OE2 O N N 239 GLU OXT O N N 240 GLU H H N N 241 GLU H2 H N N 242 GLU HA H N N 243 GLU HB2 H N N 244 GLU HB3 H N N 245 GLU HG2 H N N 246 GLU HG3 H N N 247 GLU HE2 H N N 248 GLU HXT H N N 249 GLY N N N N 250 GLY CA C N N 251 GLY C C N N 252 GLY O O N N 253 GLY OXT O N N 254 GLY H H N N 255 GLY H2 H N N 256 GLY HA2 H N N 257 GLY HA3 H N N 258 GLY HXT H N N 259 HIS N N N N 260 HIS CA C N S 261 HIS C C N N 262 HIS O O N N 263 HIS CB C N N 264 HIS CG C Y N 265 HIS ND1 N Y N 266 HIS CD2 C Y N 267 HIS CE1 C Y N 268 HIS NE2 N Y N 269 HIS OXT O N N 270 HIS H H N N 271 HIS H2 H N N 272 HIS HA H N N 273 HIS HB2 H N N 274 HIS HB3 H N N 275 HIS HD1 H N N 276 HIS HD2 H N N 277 HIS HE1 H N N 278 HIS HE2 H N N 279 HIS HXT H N N 280 HOH O O N N 281 HOH H1 H N N 282 HOH H2 H N N 283 ILE N N N N 284 ILE CA C N S 285 ILE C C N N 286 ILE O O N N 287 ILE CB C N S 288 ILE CG1 C N N 289 ILE CG2 C N N 290 ILE CD1 C N N 291 ILE OXT O N N 292 ILE H H N N 293 ILE H2 H N N 294 ILE HA H N N 295 ILE HB H N N 296 ILE HG12 H N N 297 ILE HG13 H N N 298 ILE HG21 H N N 299 ILE HG22 H N N 300 ILE HG23 H N N 301 ILE HD11 H N N 302 ILE HD12 H N N 303 ILE HD13 H N N 304 ILE HXT H N N 305 LEU N N N N 306 LEU CA C N S 307 LEU C C N N 308 LEU O O N N 309 LEU CB C N N 310 LEU CG C N N 311 LEU CD1 C N N 312 LEU CD2 C N N 313 LEU OXT O N N 314 LEU H H N N 315 LEU H2 H N N 316 LEU HA H N N 317 LEU HB2 H N N 318 LEU HB3 H N N 319 LEU HG H N N 320 LEU HD11 H N N 321 LEU HD12 H N N 322 LEU HD13 H N N 323 LEU HD21 H N N 324 LEU HD22 H N N 325 LEU HD23 H N N 326 LEU HXT H N N 327 LYS N N N N 328 LYS CA C N S 329 LYS C C N N 330 LYS O O N N 331 LYS CB C N N 332 LYS CG C N N 333 LYS CD C N N 334 LYS CE C N N 335 LYS NZ N N N 336 LYS OXT O N N 337 LYS H H N N 338 LYS H2 H N N 339 LYS HA H N N 340 LYS HB2 H N N 341 LYS HB3 H N N 342 LYS HG2 H N N 343 LYS HG3 H N N 344 LYS HD2 H N N 345 LYS HD3 H N N 346 LYS HE2 H N N 347 LYS HE3 H N N 348 LYS HZ1 H N N 349 LYS HZ2 H N N 350 LYS HZ3 H N N 351 LYS HXT H N N 352 MET N N N N 353 MET CA C N S 354 MET C C N N 355 MET O O N N 356 MET CB C N N 357 MET CG C N N 358 MET SD S N N 359 MET CE C N N 360 MET OXT O N N 361 MET H H N N 362 MET H2 H N N 363 MET HA H N N 364 MET HB2 H N N 365 MET HB3 H N N 366 MET HG2 H N N 367 MET HG3 H N N 368 MET HE1 H N N 369 MET HE2 H N N 370 MET HE3 H N N 371 MET HXT H N N 372 MG MG MG N N 373 PHE N N N N 374 PHE CA C N S 375 PHE C C N N 376 PHE O O N N 377 PHE CB C N N 378 PHE CG C Y N 379 PHE CD1 C Y N 380 PHE CD2 C Y N 381 PHE CE1 C Y N 382 PHE CE2 C Y N 383 PHE CZ C Y N 384 PHE OXT O N N 385 PHE H H N N 386 PHE H2 H N N 387 PHE HA H N N 388 PHE HB2 H N N 389 PHE HB3 H N N 390 PHE HD1 H N N 391 PHE HD2 H N N 392 PHE HE1 H N N 393 PHE HE2 H N N 394 PHE HZ H N N 395 PHE HXT H N N 396 PRO N N N N 397 PRO CA C N S 398 PRO C C N N 399 PRO O O N N 400 PRO CB C N N 401 PRO CG C N N 402 PRO CD C N N 403 PRO OXT O N N 404 PRO H H N N 405 PRO HA H N N 406 PRO HB2 H N N 407 PRO HB3 H N N 408 PRO HG2 H N N 409 PRO HG3 H N N 410 PRO HD2 H N N 411 PRO HD3 H N N 412 PRO HXT H N N 413 SER N N N N 414 SER CA C N S 415 SER C C N N 416 SER O O N N 417 SER CB C N N 418 SER OG O N N 419 SER OXT O N N 420 SER H H N N 421 SER H2 H N N 422 SER HA H N N 423 SER HB2 H N N 424 SER HB3 H N N 425 SER HG H N N 426 SER HXT H N N 427 THR N N N N 428 THR CA C N S 429 THR C C N N 430 THR O O N N 431 THR CB C N R 432 THR OG1 O N N 433 THR CG2 C N N 434 THR OXT O N N 435 THR H H N N 436 THR H2 H N N 437 THR HA H N N 438 THR HB H N N 439 THR HG1 H N N 440 THR HG21 H N N 441 THR HG22 H N N 442 THR HG23 H N N 443 THR HXT H N N 444 TRP N N N N 445 TRP CA C N S 446 TRP C C N N 447 TRP O O N N 448 TRP CB C N N 449 TRP CG C Y N 450 TRP CD1 C Y N 451 TRP CD2 C Y N 452 TRP NE1 N Y N 453 TRP CE2 C Y N 454 TRP CE3 C Y N 455 TRP CZ2 C Y N 456 TRP CZ3 C Y N 457 TRP CH2 C Y N 458 TRP OXT O N N 459 TRP H H N N 460 TRP H2 H N N 461 TRP HA H N N 462 TRP HB2 H N N 463 TRP HB3 H N N 464 TRP HD1 H N N 465 TRP HE1 H N N 466 TRP HE3 H N N 467 TRP HZ2 H N N 468 TRP HZ3 H N N 469 TRP HH2 H N N 470 TRP HXT H N N 471 TYR N N N N 472 TYR CA C N S 473 TYR C C N N 474 TYR O O N N 475 TYR CB C N N 476 TYR CG C Y N 477 TYR CD1 C Y N 478 TYR CD2 C Y N 479 TYR CE1 C Y N 480 TYR CE2 C Y N 481 TYR CZ C Y N 482 TYR OH O N N 483 TYR OXT O N N 484 TYR H H N N 485 TYR H2 H N N 486 TYR HA H N N 487 TYR HB2 H N N 488 TYR HB3 H N N 489 TYR HD1 H N N 490 TYR HD2 H N N 491 TYR HE1 H N N 492 TYR HE2 H N N 493 TYR HH H N N 494 TYR HXT H N N 495 U OP3 O N N 496 U P P N N 497 U OP1 O N N 498 U OP2 O N N 499 U "O5'" O N N 500 U "C5'" C N N 501 U "C4'" C N R 502 U "O4'" O N N 503 U "C3'" C N S 504 U "O3'" O N N 505 U "C2'" C N R 506 U "O2'" O N N 507 U "C1'" C N R 508 U N1 N N N 509 U C2 C N N 510 U O2 O N N 511 U N3 N N N 512 U C4 C N N 513 U O4 O N N 514 U C5 C N N 515 U C6 C N N 516 U HOP3 H N N 517 U HOP2 H N N 518 U "H5'" H N N 519 U "H5''" H N N 520 U "H4'" H N N 521 U "H3'" H N N 522 U "HO3'" H N N 523 U "H2'" H N N 524 U "HO2'" H N N 525 U "H1'" H N N 526 U H3 H N N 527 U H5 H N N 528 U H6 H N N 529 VAL N N N N 530 VAL CA C N S 531 VAL C C N N 532 VAL O O N N 533 VAL CB C N N 534 VAL CG1 C N N 535 VAL CG2 C N N 536 VAL OXT O N N 537 VAL H H N N 538 VAL H2 H N N 539 VAL HA H N N 540 VAL HB H N N 541 VAL HG11 H N N 542 VAL HG12 H N N 543 VAL HG13 H N N 544 VAL HG21 H N N 545 VAL HG22 H N N 546 VAL HG23 H N N 547 VAL HXT H N N 548 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 ATP PG O1G doub N N 109 ATP PG O2G sing N N 110 ATP PG O3G sing N N 111 ATP PG O3B sing N N 112 ATP O2G HOG2 sing N N 113 ATP O3G HOG3 sing N N 114 ATP PB O1B doub N N 115 ATP PB O2B sing N N 116 ATP PB O3B sing N N 117 ATP PB O3A sing N N 118 ATP O2B HOB2 sing N N 119 ATP PA O1A doub N N 120 ATP PA O2A sing N N 121 ATP PA O3A sing N N 122 ATP PA "O5'" sing N N 123 ATP O2A HOA2 sing N N 124 ATP "O5'" "C5'" sing N N 125 ATP "C5'" "C4'" sing N N 126 ATP "C5'" "H5'1" sing N N 127 ATP "C5'" "H5'2" sing N N 128 ATP "C4'" "O4'" sing N N 129 ATP "C4'" "C3'" sing N N 130 ATP "C4'" "H4'" sing N N 131 ATP "O4'" "C1'" sing N N 132 ATP "C3'" "O3'" sing N N 133 ATP "C3'" "C2'" sing N N 134 ATP "C3'" "H3'" sing N N 135 ATP "O3'" "HO3'" sing N N 136 ATP "C2'" "O2'" sing N N 137 ATP "C2'" "C1'" sing N N 138 ATP "C2'" "H2'" sing N N 139 ATP "O2'" "HO2'" sing N N 140 ATP "C1'" N9 sing N N 141 ATP "C1'" "H1'" sing N N 142 ATP N9 C8 sing Y N 143 ATP N9 C4 sing Y N 144 ATP C8 N7 doub Y N 145 ATP C8 H8 sing N N 146 ATP N7 C5 sing Y N 147 ATP C5 C6 sing Y N 148 ATP C5 C4 doub Y N 149 ATP C6 N6 sing N N 150 ATP C6 N1 doub Y N 151 ATP N6 HN61 sing N N 152 ATP N6 HN62 sing N N 153 ATP N1 C2 sing Y N 154 ATP C2 N3 doub Y N 155 ATP C2 H2 sing N N 156 ATP N3 C4 sing Y N 157 C OP3 P sing N N 158 C OP3 HOP3 sing N N 159 C P OP1 doub N N 160 C P OP2 sing N N 161 C P "O5'" sing N N 162 C OP2 HOP2 sing N N 163 C "O5'" "C5'" sing N N 164 C "C5'" "C4'" sing N N 165 C "C5'" "H5'" sing N N 166 C "C5'" "H5''" sing N N 167 C "C4'" "O4'" sing N N 168 C "C4'" "C3'" sing N N 169 C "C4'" "H4'" sing N N 170 C "O4'" "C1'" sing N N 171 C "C3'" "O3'" sing N N 172 C "C3'" "C2'" sing N N 173 C "C3'" "H3'" sing N N 174 C "O3'" "HO3'" sing N N 175 C "C2'" "O2'" sing N N 176 C "C2'" "C1'" sing N N 177 C "C2'" "H2'" sing N N 178 C "O2'" "HO2'" sing N N 179 C "C1'" N1 sing N N 180 C "C1'" "H1'" sing N N 181 C N1 C2 sing N N 182 C N1 C6 sing N N 183 C C2 O2 doub N N 184 C C2 N3 sing N N 185 C N3 C4 doub N N 186 C C4 N4 sing N N 187 C C4 C5 sing N N 188 C N4 H41 sing N N 189 C N4 H42 sing N N 190 C C5 C6 doub N N 191 C C5 H5 sing N N 192 C C6 H6 sing N N 193 G OP3 P sing N N 194 G OP3 HOP3 sing N N 195 G P OP1 doub N N 196 G P OP2 sing N N 197 G P "O5'" sing N N 198 G OP2 HOP2 sing N N 199 G "O5'" "C5'" sing N N 200 G "C5'" "C4'" sing N N 201 G "C5'" "H5'" sing N N 202 G "C5'" "H5''" sing N N 203 G "C4'" "O4'" sing N N 204 G "C4'" "C3'" sing N N 205 G "C4'" "H4'" sing N N 206 G "O4'" "C1'" sing N N 207 G "C3'" "O3'" sing N N 208 G "C3'" "C2'" sing N N 209 G "C3'" "H3'" sing N N 210 G "O3'" "HO3'" sing N N 211 G "C2'" "O2'" sing N N 212 G "C2'" "C1'" sing N N 213 G "C2'" "H2'" sing N N 214 G "O2'" "HO2'" sing N N 215 G "C1'" N9 sing N N 216 G "C1'" "H1'" sing N N 217 G N9 C8 sing Y N 218 G N9 C4 sing Y N 219 G C8 N7 doub Y N 220 G C8 H8 sing N N 221 G N7 C5 sing Y N 222 G C5 C6 sing N N 223 G C5 C4 doub Y N 224 G C6 O6 doub N N 225 G C6 N1 sing N N 226 G N1 C2 sing N N 227 G N1 H1 sing N N 228 G C2 N2 sing N N 229 G C2 N3 doub N N 230 G N2 H21 sing N N 231 G N2 H22 sing N N 232 G N3 C4 sing N N 233 GLU N CA sing N N 234 GLU N H sing N N 235 GLU N H2 sing N N 236 GLU CA C sing N N 237 GLU CA CB sing N N 238 GLU CA HA sing N N 239 GLU C O doub N N 240 GLU C OXT sing N N 241 GLU CB CG sing N N 242 GLU CB HB2 sing N N 243 GLU CB HB3 sing N N 244 GLU CG CD sing N N 245 GLU CG HG2 sing N N 246 GLU CG HG3 sing N N 247 GLU CD OE1 doub N N 248 GLU CD OE2 sing N N 249 GLU OE2 HE2 sing N N 250 GLU OXT HXT sing N N 251 GLY N CA sing N N 252 GLY N H sing N N 253 GLY N H2 sing N N 254 GLY CA C sing N N 255 GLY CA HA2 sing N N 256 GLY CA HA3 sing N N 257 GLY C O doub N N 258 GLY C OXT sing N N 259 GLY OXT HXT sing N N 260 HIS N CA sing N N 261 HIS N H sing N N 262 HIS N H2 sing N N 263 HIS CA C sing N N 264 HIS CA CB sing N N 265 HIS CA HA sing N N 266 HIS C O doub N N 267 HIS C OXT sing N N 268 HIS CB CG sing N N 269 HIS CB HB2 sing N N 270 HIS CB HB3 sing N N 271 HIS CG ND1 sing Y N 272 HIS CG CD2 doub Y N 273 HIS ND1 CE1 doub Y N 274 HIS ND1 HD1 sing N N 275 HIS CD2 NE2 sing Y N 276 HIS CD2 HD2 sing N N 277 HIS CE1 NE2 sing Y N 278 HIS CE1 HE1 sing N N 279 HIS NE2 HE2 sing N N 280 HIS OXT HXT sing N N 281 HOH O H1 sing N N 282 HOH O H2 sing N N 283 ILE N CA sing N N 284 ILE N H sing N N 285 ILE N H2 sing N N 286 ILE CA C sing N N 287 ILE CA CB sing N N 288 ILE CA HA sing N N 289 ILE C O doub N N 290 ILE C OXT sing N N 291 ILE CB CG1 sing N N 292 ILE CB CG2 sing N N 293 ILE CB HB sing N N 294 ILE CG1 CD1 sing N N 295 ILE CG1 HG12 sing N N 296 ILE CG1 HG13 sing N N 297 ILE CG2 HG21 sing N N 298 ILE CG2 HG22 sing N N 299 ILE CG2 HG23 sing N N 300 ILE CD1 HD11 sing N N 301 ILE CD1 HD12 sing N N 302 ILE CD1 HD13 sing N N 303 ILE OXT HXT sing N N 304 LEU N CA sing N N 305 LEU N H sing N N 306 LEU N H2 sing N N 307 LEU CA C sing N N 308 LEU CA CB sing N N 309 LEU CA HA sing N N 310 LEU C O doub N N 311 LEU C OXT sing N N 312 LEU CB CG sing N N 313 LEU CB HB2 sing N N 314 LEU CB HB3 sing N N 315 LEU CG CD1 sing N N 316 LEU CG CD2 sing N N 317 LEU CG HG sing N N 318 LEU CD1 HD11 sing N N 319 LEU CD1 HD12 sing N N 320 LEU CD1 HD13 sing N N 321 LEU CD2 HD21 sing N N 322 LEU CD2 HD22 sing N N 323 LEU CD2 HD23 sing N N 324 LEU OXT HXT sing N N 325 LYS N CA sing N N 326 LYS N H sing N N 327 LYS N H2 sing N N 328 LYS CA C sing N N 329 LYS CA CB sing N N 330 LYS CA HA sing N N 331 LYS C O doub N N 332 LYS C OXT sing N N 333 LYS CB CG sing N N 334 LYS CB HB2 sing N N 335 LYS CB HB3 sing N N 336 LYS CG CD sing N N 337 LYS CG HG2 sing N N 338 LYS CG HG3 sing N N 339 LYS CD CE sing N N 340 LYS CD HD2 sing N N 341 LYS CD HD3 sing N N 342 LYS CE NZ sing N N 343 LYS CE HE2 sing N N 344 LYS CE HE3 sing N N 345 LYS NZ HZ1 sing N N 346 LYS NZ HZ2 sing N N 347 LYS NZ HZ3 sing N N 348 LYS OXT HXT sing N N 349 MET N CA sing N N 350 MET N H sing N N 351 MET N H2 sing N N 352 MET CA C sing N N 353 MET CA CB sing N N 354 MET CA HA sing N N 355 MET C O doub N N 356 MET C OXT sing N N 357 MET CB CG sing N N 358 MET CB HB2 sing N N 359 MET CB HB3 sing N N 360 MET CG SD sing N N 361 MET CG HG2 sing N N 362 MET CG HG3 sing N N 363 MET SD CE sing N N 364 MET CE HE1 sing N N 365 MET CE HE2 sing N N 366 MET CE HE3 sing N N 367 MET OXT HXT sing N N 368 PHE N CA sing N N 369 PHE N H sing N N 370 PHE N H2 sing N N 371 PHE CA C sing N N 372 PHE CA CB sing N N 373 PHE CA HA sing N N 374 PHE C O doub N N 375 PHE C OXT sing N N 376 PHE CB CG sing N N 377 PHE CB HB2 sing N N 378 PHE CB HB3 sing N N 379 PHE CG CD1 doub Y N 380 PHE CG CD2 sing Y N 381 PHE CD1 CE1 sing Y N 382 PHE CD1 HD1 sing N N 383 PHE CD2 CE2 doub Y N 384 PHE CD2 HD2 sing N N 385 PHE CE1 CZ doub Y N 386 PHE CE1 HE1 sing N N 387 PHE CE2 CZ sing Y N 388 PHE CE2 HE2 sing N N 389 PHE CZ HZ sing N N 390 PHE OXT HXT sing N N 391 PRO N CA sing N N 392 PRO N CD sing N N 393 PRO N H sing N N 394 PRO CA C sing N N 395 PRO CA CB sing N N 396 PRO CA HA sing N N 397 PRO C O doub N N 398 PRO C OXT sing N N 399 PRO CB CG sing N N 400 PRO CB HB2 sing N N 401 PRO CB HB3 sing N N 402 PRO CG CD sing N N 403 PRO CG HG2 sing N N 404 PRO CG HG3 sing N N 405 PRO CD HD2 sing N N 406 PRO CD HD3 sing N N 407 PRO OXT HXT sing N N 408 SER N CA sing N N 409 SER N H sing N N 410 SER N H2 sing N N 411 SER CA C sing N N 412 SER CA CB sing N N 413 SER CA HA sing N N 414 SER C O doub N N 415 SER C OXT sing N N 416 SER CB OG sing N N 417 SER CB HB2 sing N N 418 SER CB HB3 sing N N 419 SER OG HG sing N N 420 SER OXT HXT sing N N 421 THR N CA sing N N 422 THR N H sing N N 423 THR N H2 sing N N 424 THR CA C sing N N 425 THR CA CB sing N N 426 THR CA HA sing N N 427 THR C O doub N N 428 THR C OXT sing N N 429 THR CB OG1 sing N N 430 THR CB CG2 sing N N 431 THR CB HB sing N N 432 THR OG1 HG1 sing N N 433 THR CG2 HG21 sing N N 434 THR CG2 HG22 sing N N 435 THR CG2 HG23 sing N N 436 THR OXT HXT sing N N 437 TRP N CA sing N N 438 TRP N H sing N N 439 TRP N H2 sing N N 440 TRP CA C sing N N 441 TRP CA CB sing N N 442 TRP CA HA sing N N 443 TRP C O doub N N 444 TRP C OXT sing N N 445 TRP CB CG sing N N 446 TRP CB HB2 sing N N 447 TRP CB HB3 sing N N 448 TRP CG CD1 doub Y N 449 TRP CG CD2 sing Y N 450 TRP CD1 NE1 sing Y N 451 TRP CD1 HD1 sing N N 452 TRP CD2 CE2 doub Y N 453 TRP CD2 CE3 sing Y N 454 TRP NE1 CE2 sing Y N 455 TRP NE1 HE1 sing N N 456 TRP CE2 CZ2 sing Y N 457 TRP CE3 CZ3 doub Y N 458 TRP CE3 HE3 sing N N 459 TRP CZ2 CH2 doub Y N 460 TRP CZ2 HZ2 sing N N 461 TRP CZ3 CH2 sing Y N 462 TRP CZ3 HZ3 sing N N 463 TRP CH2 HH2 sing N N 464 TRP OXT HXT sing N N 465 TYR N CA sing N N 466 TYR N H sing N N 467 TYR N H2 sing N N 468 TYR CA C sing N N 469 TYR CA CB sing N N 470 TYR CA HA sing N N 471 TYR C O doub N N 472 TYR C OXT sing N N 473 TYR CB CG sing N N 474 TYR CB HB2 sing N N 475 TYR CB HB3 sing N N 476 TYR CG CD1 doub Y N 477 TYR CG CD2 sing Y N 478 TYR CD1 CE1 sing Y N 479 TYR CD1 HD1 sing N N 480 TYR CD2 CE2 doub Y N 481 TYR CD2 HD2 sing N N 482 TYR CE1 CZ doub Y N 483 TYR CE1 HE1 sing N N 484 TYR CE2 CZ sing Y N 485 TYR CE2 HE2 sing N N 486 TYR CZ OH sing N N 487 TYR OH HH sing N N 488 TYR OXT HXT sing N N 489 U OP3 P sing N N 490 U OP3 HOP3 sing N N 491 U P OP1 doub N N 492 U P OP2 sing N N 493 U P "O5'" sing N N 494 U OP2 HOP2 sing N N 495 U "O5'" "C5'" sing N N 496 U "C5'" "C4'" sing N N 497 U "C5'" "H5'" sing N N 498 U "C5'" "H5''" sing N N 499 U "C4'" "O4'" sing N N 500 U "C4'" "C3'" sing N N 501 U "C4'" "H4'" sing N N 502 U "O4'" "C1'" sing N N 503 U "C3'" "O3'" sing N N 504 U "C3'" "C2'" sing N N 505 U "C3'" "H3'" sing N N 506 U "O3'" "HO3'" sing N N 507 U "C2'" "O2'" sing N N 508 U "C2'" "C1'" sing N N 509 U "C2'" "H2'" sing N N 510 U "O2'" "HO2'" sing N N 511 U "C1'" N1 sing N N 512 U "C1'" "H1'" sing N N 513 U N1 C2 sing N N 514 U N1 C6 sing N N 515 U C2 O2 doub N N 516 U C2 N3 sing N N 517 U N3 C4 sing N N 518 U N3 H3 sing N N 519 U C4 O4 doub N N 520 U C4 C5 sing N N 521 U C5 C6 doub N N 522 U C5 H5 sing N N 523 U C6 H6 sing N N 524 VAL N CA sing N N 525 VAL N H sing N N 526 VAL N H2 sing N N 527 VAL CA C sing N N 528 VAL CA CB sing N N 529 VAL CA HA sing N N 530 VAL C O doub N N 531 VAL C OXT sing N N 532 VAL CB CG1 sing N N 533 VAL CB CG2 sing N N 534 VAL CB HB sing N N 535 VAL CG1 HG11 sing N N 536 VAL CG1 HG12 sing N N 537 VAL CG1 HG13 sing N N 538 VAL CG2 HG21 sing N N 539 VAL CG2 HG22 sing N N 540 VAL CG2 HG23 sing N N 541 VAL OXT HXT sing N N 542 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3AM1 'double helix' 3AM1 'a-form double helix' 3AM1 'hairpin loop' 3AM1 tetraloop 3AM1 'mismatched base pair' 3AM1 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 79 1_555 -0.661 -0.074 0.183 -11.569 -13.593 5.528 1 B_G1:C79_B B 1 ? B 79 ? 19 1 1 B G 2 1_555 B C 78 1_555 -0.110 -0.325 0.570 -0.162 -14.478 -3.565 2 B_G2:C78_B B 2 ? B 78 ? 19 1 1 B C 3 1_555 B G 77 1_555 -0.319 -0.307 0.521 3.016 -13.186 -1.750 3 B_C3:G77_B B 3 ? B 77 ? 19 1 1 B G 4 1_555 B C 76 1_555 -0.410 -0.337 -0.062 -0.046 -12.970 -3.726 4 B_G4:C76_B B 4 ? B 76 ? 19 1 1 B C 5 1_555 B G 75 1_555 -0.507 -0.168 -0.125 3.365 -8.077 -0.971 5 B_C5:G75_B B 5 ? B 75 ? 19 1 1 B G 6 1_555 B U 74 1_555 -1.104 -0.504 0.074 1.584 -15.779 7.761 6 B_G6:U74_B B 6 ? B 74 ? 28 1 1 B G 7 1_555 B C 73 1_555 0.323 -0.334 0.217 -1.065 -17.089 -2.256 7 B_G7:C73_B B 7 ? B 73 ? 19 1 1 B G 8 1_555 B C 72 1_555 -0.104 -0.323 -0.032 -8.175 -11.101 -5.207 8 B_G8:C72_B B 8 ? B 72 ? 19 1 1 B G 9 1_555 B C 71 1_555 0.370 -0.158 0.777 -1.579 -13.153 -2.580 9 B_G9:C71_B B 9 ? B 71 ? 19 1 1 B G 56 1_555 B C 70 1_555 0.133 0.006 0.148 -5.374 -9.279 -1.380 10 B_G56:C70_B B 56 ? B 70 ? 19 1 1 B G 57 1_555 B C 69 1_555 0.601 -0.158 -0.529 -2.155 6.931 -2.754 11 B_G57:C69_B B 57 ? B 69 ? 19 1 1 B G 58 1_555 B C 68 1_555 -0.363 0.133 -0.669 -19.579 -13.536 3.702 12 B_G58:C68_B B 58 ? B 68 ? 19 1 1 B G 59 1_555 B C 67 1_555 -0.210 -0.055 -0.354 -4.652 -0.650 3.979 13 B_G59:C67_B B 59 ? B 67 ? 19 1 1 B U 60 1_555 B A 64 1_555 4.211 -1.912 0.081 -7.872 7.216 -102.471 14 B_U60:A64_B B 60 ? B 64 ? 24 4 1 B U 61 1_555 B G 20 1_555 0.269 -5.796 0.789 26.367 9.474 -88.613 15 B_U61:G20_B B 61 ? B 20 ? ? 2 1 B G 37 1_555 B C 32 1_555 -0.686 -0.385 0.297 6.389 -3.941 -0.502 16 B_G37:C32_B B 37 ? B 32 ? 19 1 1 B C 38 1_555 B G 31 1_555 0.160 -0.582 -0.419 8.314 -17.494 3.448 17 B_C38:G31_B B 38 ? B 31 ? 19 1 1 B C 39 1_555 B G 30 1_555 -1.124 0.230 0.115 6.431 1.263 -4.226 18 B_C39:G30_B B 39 ? B 30 ? 19 1 1 B C 12 1_555 B G 29 1_555 -0.370 -0.043 -0.191 8.302 -16.637 10.329 19 B_C12:G29_B B 12 ? B 29 ? 19 1 1 B C 13 1_555 B G 28 1_555 -0.062 0.019 -0.115 -2.669 -10.120 4.591 20 B_C13:G28_B B 13 ? B 28 ? 19 1 1 B G 14 1_555 B C 27 1_555 -0.067 -0.207 -0.652 -28.557 -9.187 -0.804 21 B_G14:C27_B B 14 ? B 27 ? 19 1 1 B G 15 1_555 B C 26 1_555 0.029 -0.091 -0.152 -9.803 -11.543 2.240 22 B_G15:C26_B B 15 ? B 26 ? 19 1 1 B G 16 1_555 B C 25 1_555 0.226 -0.085 -0.764 -18.490 -14.152 -0.502 23 B_G16:C25_B B 16 ? B 25 ? 19 1 1 B C 17 1_555 B G 24 1_555 0.564 -0.094 0.256 -4.836 5.048 -1.384 24 B_C17:G24_B B 17 ? B 24 ? 19 1 1 B U 18 1_555 B A 23 1_555 0.373 0.057 -0.466 3.505 -12.296 -2.083 25 B_U18:A23_B B 18 ? B 23 ? 20 1 1 B U 19 1_555 B U 65 1_555 2.233 3.327 0.208 11.932 15.292 178.944 26 B_U19:U65_B B 19 ? B 65 ? 13 2 1 B G 21 1_555 B C 62 1_555 0.314 -0.079 0.450 -22.108 -34.778 -3.153 27 B_G21:C62_B B 21 ? B 62 ? 19 1 1 B G 40 1_555 B C 55 1_555 -0.333 -0.175 -0.405 -20.225 4.940 -3.617 28 B_G40:C55_B B 40 ? B 55 ? 19 1 1 B A 41 1_555 B U 54 1_555 -0.046 -0.102 -0.287 -9.233 -6.926 6.612 29 B_A41:U54_B B 41 ? B 54 ? 20 1 1 B G 42 1_555 B C 53 1_555 -0.584 -0.268 -0.339 1.317 -6.623 2.967 30 B_G42:C53_B B 42 ? B 53 ? 19 1 1 B G 43 1_555 B C 52 1_555 -0.069 -0.107 0.000 -3.965 -5.703 0.266 31 B_G43:C52_B B 43 ? B 52 ? 19 1 1 B G 44 1_555 B C 51 1_555 -0.108 -0.172 -0.301 -7.779 -6.544 -1.129 32 B_G44:C51_B B 44 ? B 51 ? 19 1 1 B C 45 1_555 B G 50 1_555 0.465 -0.031 -0.642 6.176 -5.976 -1.865 33 B_C45:G50_B B 45 ? B 50 ? 19 1 1 B G 46 1_555 B A 49 1_555 7.399 -5.507 0.239 4.912 2.314 -18.486 34 B_G46:A49_B B 46 ? B 49 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 79 1_555 B G 2 1_555 B C 78 1_555 -1.393 -1.541 2.803 -5.772 4.080 36.549 -2.884 1.520 2.801 6.431 9.100 37.203 1 BB_G1G2:C78C79_BB B 1 ? B 79 ? B 2 ? B 78 ? 1 B G 2 1_555 B C 78 1_555 B C 3 1_555 B G 77 1_555 0.241 -0.924 3.223 1.862 6.413 27.105 -3.379 -0.076 2.940 13.425 -3.899 27.900 2 BB_G2C3:G77C78_BB B 2 ? B 78 ? B 3 ? B 77 ? 1 B C 3 1_555 B G 77 1_555 B G 4 1_555 B C 76 1_555 1.011 -2.405 3.186 2.827 10.807 29.725 -6.119 -1.401 2.278 20.190 -5.281 31.710 3 BB_C3G4:C76G77_BB B 3 ? B 77 ? B 4 ? B 76 ? 1 B G 4 1_555 B C 76 1_555 B C 5 1_555 B G 75 1_555 -0.421 -1.956 3.175 -3.998 -0.964 28.396 -3.732 -0.043 3.265 -1.953 8.096 28.686 4 BB_G4C5:G75C76_BB B 4 ? B 76 ? B 5 ? B 75 ? 1 B C 5 1_555 B G 75 1_555 B G 6 1_555 B U 74 1_555 -0.003 -1.386 3.284 -2.524 6.367 30.840 -3.684 -0.446 2.937 11.790 4.673 31.573 5 BB_C5G6:U74G75_BB B 5 ? B 75 ? B 6 ? B 74 ? 1 B G 6 1_555 B U 74 1_555 B G 7 1_555 B C 73 1_555 -0.682 -1.405 3.242 -3.836 4.862 39.577 -2.596 0.567 3.105 7.127 5.624 40.039 6 BB_G6G7:C73U74_BB B 6 ? B 74 ? B 7 ? B 73 ? 1 B G 7 1_555 B C 73 1_555 B G 8 1_555 B C 72 1_555 0.193 -2.216 3.351 3.784 6.539 28.139 -5.772 0.406 2.778 13.151 -7.610 29.116 7 BB_G7G8:C72C73_BB B 7 ? B 73 ? B 8 ? B 72 ? 1 B G 8 1_555 B C 72 1_555 B G 9 1_555 B C 71 1_555 1.040 -1.770 2.922 3.691 2.927 34.030 -3.404 -1.248 2.858 4.971 -6.268 34.345 8 BB_G8G9:C71C72_BB B 8 ? B 72 ? B 9 ? B 71 ? 1 B G 9 1_555 B C 71 1_555 B G 56 1_555 B C 70 1_555 -1.516 -2.023 2.911 4.371 13.881 41.416 -3.737 2.356 2.003 18.938 -5.963 43.792 9 BB_G9G56:C70C71_BB B 9 ? B 71 ? B 56 ? B 70 ? 1 B G 56 1_555 B C 70 1_555 B G 57 1_555 B C 69 1_555 -0.417 -2.208 3.164 2.083 3.877 32.856 -4.474 1.055 2.860 6.816 -3.663 33.141 10 BB_G56G57:C69C70_BB B 56 ? B 70 ? B 57 ? B 69 ? 1 B G 57 1_555 B C 69 1_555 B G 58 1_555 B C 68 1_555 1.105 -2.065 3.753 3.304 15.290 24.776 -7.401 -1.474 2.250 31.895 -6.892 29.236 11 BB_G57G58:C68C69_BB B 57 ? B 69 ? B 58 ? B 68 ? 1 B G 58 1_555 B C 68 1_555 B G 59 1_555 B C 67 1_555 0.381 -2.181 2.786 0.376 14.207 29.327 -5.648 -0.634 1.591 26.209 -0.693 32.521 12 BB_G58G59:C67C68_BB B 58 ? B 68 ? B 59 ? B 67 ? 1 B G 59 1_555 B C 67 1_555 B U 60 1_555 B A 64 1_555 -2.188 -1.693 3.471 -1.186 1.553 94.545 -1.182 1.466 3.470 1.057 0.807 94.560 13 BB_G59U60:A64C67_BB B 59 ? B 67 ? B 60 ? B 64 ? 1 B U 60 1_555 B A 64 1_555 B U 61 1_555 B G 20 1_555 2.435 -2.634 3.349 7.239 13.832 34.492 -5.769 -2.873 2.585 21.987 -11.507 37.762 14 BB_U60U61:G20A64_BB B 60 ? B 64 ? B 61 ? B 20 ? 1 B G 37 1_555 B C 32 1_555 B C 38 1_555 B G 31 1_555 0.582 -1.531 3.243 7.895 1.019 36.142 -2.551 0.152 3.252 1.618 -12.539 36.980 15 BB_G37C38:G31C32_BB B 37 ? B 32 ? B 38 ? B 31 ? 1 B C 38 1_555 B G 31 1_555 B C 39 1_555 B G 30 1_555 -0.493 -2.164 3.380 -3.034 10.405 25.731 -6.771 0.359 2.383 22.153 6.460 27.885 16 BB_C38C39:G30G31_BB B 38 ? B 31 ? B 39 ? B 30 ? 1 B C 39 1_555 B G 30 1_555 B C 12 1_555 B G 29 1_555 1.121 -2.835 3.097 3.282 6.711 26.804 -7.291 -1.652 2.445 14.131 -6.910 27.807 17 BB_C39C12:G29G30_BB B 39 ? B 30 ? B 12 ? B 29 ? 1 B C 12 1_555 B G 29 1_555 B C 13 1_555 B G 28 1_555 -0.921 -1.596 3.344 -5.138 8.355 34.804 -3.741 0.768 2.995 13.636 8.385 36.118 18 BB_C12C13:G28G29_BB B 12 ? B 29 ? B 13 ? B 28 ? 1 B C 13 1_555 B G 28 1_555 B G 14 1_555 B C 27 1_555 -0.407 -2.025 3.903 2.751 17.398 30.598 -6.033 1.097 2.398 30.047 -4.752 35.201 19 BB_C13G14:C27G28_BB B 13 ? B 28 ? B 14 ? B 27 ? 1 B G 14 1_555 B C 27 1_555 B G 15 1_555 B C 26 1_555 0.274 -1.456 2.753 -3.407 4.594 32.270 -3.221 -0.959 2.487 8.185 6.071 32.759 20 BB_G14G15:C26C27_BB B 14 ? B 27 ? B 15 ? B 26 ? 1 B G 15 1_555 B C 26 1_555 B G 16 1_555 B C 25 1_555 0.194 -1.672 3.503 6.995 9.406 32.816 -4.245 0.754 2.908 16.025 -11.918 34.792 21 BB_G15G16:C25C26_BB B 15 ? B 26 ? B 16 ? B 25 ? 1 B G 16 1_555 B C 25 1_555 B C 17 1_555 B G 24 1_555 0.111 -1.571 2.938 -8.643 0.863 32.430 -2.847 -1.454 2.776 1.512 15.140 33.543 22 BB_G16C17:G24C25_BB B 16 ? B 25 ? B 17 ? B 24 ? 1 B C 17 1_555 B G 24 1_555 B U 18 1_555 B A 23 1_555 -0.091 -2.097 2.908 8.516 1.741 29.354 -4.274 1.637 2.652 3.345 -16.359 30.586 23 BB_C17U18:A23G24_BB B 17 ? B 24 ? B 18 ? B 23 ? 1 B U 18 1_555 B A 23 1_555 B U 19 1_555 B U 65 1_555 0.412 -1.078 3.129 -7.505 5.061 -52.661 0.887 -0.007 3.238 -5.658 -8.390 -53.378 24 BB_U18U19:U65A23_BB B 18 ? B 23 ? B 19 ? B 65 ? 1 B G 40 1_555 B C 55 1_555 B A 41 1_555 B U 54 1_555 0.330 -1.474 3.125 -0.793 10.896 29.935 -4.437 -0.729 2.443 20.264 1.476 31.823 25 BB_G40A41:U54C55_BB B 40 ? B 55 ? B 41 ? B 54 ? 1 B A 41 1_555 B U 54 1_555 B G 42 1_555 B C 53 1_555 -0.489 -1.629 3.117 -0.584 7.910 26.775 -5.045 0.892 2.550 16.622 1.227 27.904 26 BB_A41G42:C53U54_BB B 41 ? B 54 ? B 42 ? B 53 ? 1 B G 42 1_555 B C 53 1_555 B G 43 1_555 B C 52 1_555 0.164 -1.836 3.311 -3.540 9.799 31.851 -4.691 -0.827 2.615 17.288 6.246 33.470 27 BB_G42G43:C52C53_BB B 42 ? B 53 ? B 43 ? B 52 ? 1 B G 43 1_555 B C 52 1_555 B G 44 1_555 B C 51 1_555 0.172 -2.125 3.309 3.527 9.093 32.212 -5.054 0.238 2.632 15.938 -6.182 33.619 28 BB_G43G44:C51C52_BB B 43 ? B 52 ? B 44 ? B 51 ? 1 B G 44 1_555 B C 51 1_555 B C 45 1_555 B G 50 1_555 0.233 -1.836 2.954 4.180 7.145 31.514 -4.331 0.202 2.498 12.879 -7.535 32.556 29 BB_G44C45:G50C51_BB B 44 ? B 51 ? B 45 ? B 50 ? 1 B C 45 1_555 B G 50 1_555 B G 46 1_555 B A 49 1_555 -2.076 -1.233 3.503 -3.609 9.811 52.840 -2.010 2.056 3.366 10.904 4.011 53.791 30 BB_C45G46:A49G50_BB B 45 ? B 50 ? B 46 ? B 49 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "ADENOSINE-5'-TRIPHOSPHATE" ATP 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3A4N _pdbx_initial_refinement_model.details 'PDB ENTRY 3A4N' #