HEADER TRANSFERASE/RNA 11-AUG-10 3AM1 TITLE CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WITH TITLE 2 ANTICODON-STEM/LOOP TRUNCATED TRNA(SEC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-SERYL-TRNA(SEC) KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: O-PHOSPHOSERYL-TRNA(SEC) KINASE, PSTK; COMPND 5 EC: 2.7.1.164; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ASL-TRUNCATED TRNA; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_COMMON: METHANOCOCCUS JANNASCHII; SOURCE 4 ORGANISM_TAXID: 2190; SOURCE 5 GENE: PSTK, MJ1538; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHESIZED RNA KEYWDS KINASE, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.ARAISO,R.ISHITANI,O.NUREKI REVDAT 4 01-NOV-23 3AM1 1 REMARK SEQADV REVDAT 3 22-JAN-14 3AM1 1 JRNL VERSN REVDAT 2 18-MAY-11 3AM1 1 TITLE REVDAT 1 29-DEC-10 3AM1 0 JRNL AUTH R.L.SHERRER,Y.ARAISO,C.ALDAG,R.ISHITANI,J.M.L.HO,D.SOLL, JRNL AUTH 2 O.NUREKI JRNL TITL C-TERMINAL DOMAIN OF ARCHAEAL O-PHOSPHOSERYL-TRNA KINASE JRNL TITL 2 DISPLAYS LARGE-SCALE MOTION TO BIND THE 7-BP D-STEM OF JRNL TITL 3 ARCHAEAL TRNA(SEC) JRNL REF NUCLEIC ACIDS RES. V. 39 1034 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 20870747 JRNL DOI 10.1093/NAR/GKQ845 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 22838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4668 - 4.7966 1.00 2910 155 0.2053 0.2559 REMARK 3 2 4.7966 - 3.8088 1.00 2821 153 0.1676 0.2335 REMARK 3 3 3.8088 - 3.3278 1.00 2728 142 0.1921 0.2762 REMARK 3 4 3.3278 - 3.0237 1.00 2792 144 0.2274 0.2729 REMARK 3 5 3.0237 - 2.8071 1.00 2736 141 0.2756 0.3514 REMARK 3 6 2.8071 - 2.6417 1.00 2732 146 0.3265 0.3957 REMARK 3 7 2.6417 - 2.5094 0.97 2685 139 0.3790 0.4381 REMARK 3 8 2.5094 - 2.4002 0.84 2289 125 0.4457 0.5078 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 56.19 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.72340 REMARK 3 B22 (A**2) : 7.72340 REMARK 3 B33 (A**2) : -15.44680 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3876 REMARK 3 ANGLE : 1.536 5651 REMARK 3 CHIRALITY : 0.077 710 REMARK 3 PLANARITY : 0.005 406 REMARK 3 DIHEDRAL : 20.276 1676 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 3:177 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0036 28.5807 61.0978 REMARK 3 T TENSOR REMARK 3 T11: 0.6710 T22: -0.0274 REMARK 3 T33: 0.3826 T12: -0.1535 REMARK 3 T13: 0.0331 T23: 0.0889 REMARK 3 L TENSOR REMARK 3 L11: 0.6809 L22: 0.0437 REMARK 3 L33: 0.4774 L12: -0.0253 REMARK 3 L13: -0.2496 L23: 0.1416 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: 0.5590 S13: 0.1521 REMARK 3 S21: -0.2537 S22: 0.1490 S23: -0.3329 REMARK 3 S31: 0.2717 S32: -0.1335 S33: -0.0430 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 189:252 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6939 -15.3754 18.5734 REMARK 3 T TENSOR REMARK 3 T11: 0.7452 T22: -0.3624 REMARK 3 T33: 0.3695 T12: 0.0704 REMARK 3 T13: 0.0218 T23: 0.1116 REMARK 3 L TENSOR REMARK 3 L11: 0.3932 L22: 0.0388 REMARK 3 L33: 0.1158 L12: -0.0815 REMARK 3 L13: -0.1373 L23: -0.0050 REMARK 3 S TENSOR REMARK 3 S11: 0.0575 S12: 0.0073 S13: -0.3218 REMARK 3 S21: -0.5583 S22: -0.1613 S23: -0.3030 REMARK 3 S31: 0.0983 S32: -0.0530 S33: 0.0590 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 8.3988 6.6848 26.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.5235 T22: 0.3309 REMARK 3 T33: 0.2545 T12: -0.0016 REMARK 3 T13: 0.0655 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.7160 L22: 1.0724 REMARK 3 L33: 0.1878 L12: -0.1472 REMARK 3 L13: 0.1027 L23: 0.2771 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.1570 S13: 0.1037 REMARK 3 S21: 0.0510 S22: -0.1291 S23: 0.1804 REMARK 3 S31: -0.3329 S32: -0.0195 S33: 0.0392 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AM1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000029416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8860 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3A4N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM PHOSPHATE BUFFER (PH 6.2), 0.2M REMARK 280 NACL, 41% PEG 200, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 153.23733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 306.47467 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 306.47467 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 153.23733 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 153.23733 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 TYR A 178 REMARK 465 VAL A 179 REMARK 465 LEU A 180 REMARK 465 GLU A 181 REMARK 465 GLU A 182 REMARK 465 ASN A 183 REMARK 465 LYS A 184 REMARK 465 ASN A 185 REMARK 465 LYS A 186 REMARK 465 ASN A 187 REMARK 465 ASN A 188 REMARK 465 MET A 233 REMARK 465 GLU A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 253 REMARK 465 GLU A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 LYS A 60 CD CE NZ REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 130 CD CE NZ REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS A 176 NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 LYS A 209 CD CE NZ REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 228 CD CE NZ REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 2 C3' - O3' - P ANGL. DEV. = -8.7 DEGREES REMARK 500 C B 3 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 G B 6 C5 - C6 - N1 ANGL. DEV. = -3.2 DEGREES REMARK 500 G B 9 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 G B 14 N9 - C1' - C2' ANGL. DEV. = -8.5 DEGREES REMARK 500 G B 14 C3' - O3' - P ANGL. DEV. = -10.7 DEGREES REMARK 500 U B 34 O4' - C1' - N1 ANGL. DEV. = -5.8 DEGREES REMARK 500 C B 39 C3' - O3' - P ANGL. DEV. = 9.2 DEGREES REMARK 500 G B 46 N9 - C1' - C2' ANGL. DEV. = -6.7 DEGREES REMARK 500 A B 47 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 G B 48 C3' - C2' - C1' ANGL. DEV. = 5.0 DEGREES REMARK 500 C B 55 N1 - C1' - C2' ANGL. DEV. = -9.2 DEGREES REMARK 500 C B 55 O4' - C1' - N1 ANGL. DEV. = 8.4 DEGREES REMARK 500 C B 62 N1 - C1' - C2' ANGL. DEV. = -14.8 DEGREES REMARK 500 C B 62 C3' - O3' - P ANGL. DEV. = -11.9 DEGREES REMARK 500 U B 65 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 U B 74 P - O5' - C5' ANGL. DEV. = -10.1 DEGREES REMARK 500 U B 74 O4' - C1' - N1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 122 54.43 36.89 REMARK 500 ASP A 157 171.82 -43.00 REMARK 500 LYS A 207 11.79 -68.26 REMARK 500 SER A 208 -42.81 -131.92 REMARK 500 ASP A 237 74.01 -152.24 REMARK 500 ALA A 238 -74.67 2.15 REMARK 500 SER A 251 -72.14 -58.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 DBREF 3AM1 A 5 252 UNP Q58933 PSTK_METJA 1 248 DBREF 3AM1 B 1 81 PDB 3AM1 3AM1 1 81 SEQADV 3AM1 MET A 1 UNP Q58933 EXPRESSION TAG SEQADV 3AM1 GLY A 2 UNP Q58933 EXPRESSION TAG SEQADV 3AM1 ASP A 3 UNP Q58933 EXPRESSION TAG SEQADV 3AM1 ILE A 4 UNP Q58933 EXPRESSION TAG SEQADV 3AM1 LEU A 253 UNP Q58933 EXPRESSION TAG SEQADV 3AM1 GLU A 254 UNP Q58933 EXPRESSION TAG SEQADV 3AM1 HIS A 255 UNP Q58933 EXPRESSION TAG SEQADV 3AM1 HIS A 256 UNP Q58933 EXPRESSION TAG SEQADV 3AM1 HIS A 257 UNP Q58933 EXPRESSION TAG SEQADV 3AM1 HIS A 258 UNP Q58933 EXPRESSION TAG SEQADV 3AM1 HIS A 259 UNP Q58933 EXPRESSION TAG SEQADV 3AM1 HIS A 260 UNP Q58933 EXPRESSION TAG SEQRES 1 A 260 MET GLY ASP ILE MET LEU ILE ILE LEU THR GLY LEU PRO SEQRES 2 A 260 GLY VAL GLY LYS SER THR PHE SER LYS ASN LEU ALA LYS SEQRES 3 A 260 ILE LEU SER LYS ASN ASN ILE ASP VAL ILE VAL LEU GLY SEQRES 4 A 260 SER ASP LEU ILE ARG GLU SER PHE PRO VAL TRP LYS GLU SEQRES 5 A 260 LYS TYR GLU GLU PHE ILE LYS LYS SER THR TYR ARG LEU SEQRES 6 A 260 ILE ASP SER ALA LEU LYS ASN TYR TRP VAL ILE VAL ASP SEQRES 7 A 260 ASP THR ASN TYR TYR ASN SER MET ARG ARG ASP LEU ILE SEQRES 8 A 260 ASN ILE ALA LYS LYS TYR ASN LYS ASN TYR ALA ILE ILE SEQRES 9 A 260 TYR LEU LYS ALA SER LEU ASP VAL LEU ILE ARG ARG ASN SEQRES 10 A 260 ILE GLU ARG GLY GLU LYS ILE PRO ASN GLU VAL ILE LYS SEQRES 11 A 260 LYS MET TYR GLU LYS PHE ASP GLU PRO GLY LYS LYS TYR SEQRES 12 A 260 LYS TRP ASP GLU PRO PHE LEU ILE ILE ASP THR THR LYS SEQRES 13 A 260 ASP ILE ASP PHE ASN GLU ILE ALA LYS LYS LEU ILE GLU SEQRES 14 A 260 LYS SER LYS GLU ILE PRO LYS PHE TYR VAL LEU GLU GLU SEQRES 15 A 260 ASN LYS ASN LYS ASN ASN ASN ILE SER ASP LYS ILE ASP SEQRES 16 A 260 LYS GLU THR ARG LYS ILE VAL SER GLU TYR ILE LYS SER SEQRES 17 A 260 LYS LYS LEU ASP LYS ASP LYS ILE LYS GLU VAL VAL GLU SEQRES 18 A 260 LEU ARG LYS GLU PHE LEU LYS LYS ILE LYS LYS MET GLU SEQRES 19 A 260 GLU VAL ASP ALA ASP ARG VAL LEU LYS GLU PHE LYS ASP SEQRES 20 A 260 LEU LEU ASN SER TYR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 81 G G C G C G G G G U A C C SEQRES 2 B 81 G G G C U U G G U A G C C SEQRES 3 B 81 C G G G G C U U C G G C C SEQRES 4 B 81 G A G G G C G A G A G C C SEQRES 5 B 81 C U C G G G G U U C G A U SEQRES 6 B 81 U C C C C C C C U G C G C SEQRES 7 B 81 C G C HET ATP A 301 31 HET MG A 401 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *7(H2 O) HELIX 1 1 GLY A 16 ASN A 31 1 16 HELIX 2 2 SER A 40 GLU A 45 1 6 HELIX 3 3 LYS A 53 LYS A 71 1 19 HELIX 4 4 TYR A 83 ASN A 98 1 16 HELIX 5 5 SER A 109 ARG A 120 1 12 HELIX 6 6 PRO A 125 PHE A 136 1 12 HELIX 7 7 ASP A 159 LYS A 172 1 14 HELIX 8 8 ASN A 189 LYS A 210 1 22 HELIX 9 9 ASP A 212 LYS A 232 1 21 HELIX 10 10 ASP A 237 TYR A 252 1 16 SHEET 1 A 5 VAL A 35 LEU A 38 0 SHEET 2 A 5 TRP A 74 VAL A 77 1 O TRP A 74 N ILE A 36 SHEET 3 A 5 MET A 5 THR A 10 1 N ILE A 7 O VAL A 75 SHEET 4 A 5 ASN A 100 LYS A 107 1 O ASN A 100 N LEU A 6 SHEET 5 A 5 LEU A 150 ASP A 153 1 O LEU A 150 N TYR A 105 LINK OG SER A 18 MG MG A 401 1555 1555 2.41 SITE 1 AC1 10 PRO A 13 GLY A 14 VAL A 15 GLY A 16 SITE 2 AC1 10 LYS A 17 SER A 18 THR A 19 ARG A 116 SITE 3 AC1 10 THR A 154 MG A 401 SITE 1 AC2 2 SER A 18 ATP A 301 CRYST1 46.749 46.749 459.712 90.00 90.00 120.00 P 31 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021391 0.012350 0.000000 0.00000 SCALE2 0.000000 0.024700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002175 0.00000