data_3AM7 # _entry.id 3AM7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.368 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3AM7 pdb_00003am7 10.2210/pdb3am7/pdb RCSB RCSB029422 ? ? WWPDB D_1000029422 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1WKW _pdbx_database_related.details 'The same protein complexed with 4EBP subtype' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3AM7 _pdbx_database_status.recvd_initial_deposition_date 2010-08-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomoo, K.' 1 'Fukuyo, A.' 2 'In, Y.' 3 'Ishida, T.' 4 # _citation.id primary _citation.title ;Structural scaffold for eIF4E binding selectivity of 4E-BP isoforms: crystal structure of eIF4E binding region of 4E-BP2 and its comparison with that of 4E-BP1. ; _citation.journal_abbrev J.Pept.Sci. _citation.journal_volume 17 _citation.page_first 650 _citation.page_last 657 _citation.year 2011 _citation.journal_id_ASTM JPSIEI _citation.country UK _citation.journal_id_ISSN 1075-2617 _citation.journal_id_CSD 1225 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21661078 _citation.pdbx_database_id_DOI 10.1002/psc.1384 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fukuyo, A.' 1 ? primary 'In, Y.' 2 ? primary 'Ishida, T.' 3 ? primary 'Tomoo, K.' 4 ? # _cell.entry_id 3AM7 _cell.length_a 87.84 _cell.length_b 87.84 _cell.length_c 37.75 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3AM7 _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Eukaryotic translation initiation factor 4E' 22288.252 1 ? ? 'UNP RESIDUES 27-217' ? 2 polymer man 'Eukaryotic translation initiation factor 4E-binding protein 2' 2282.627 1 ? ? 'UNP RESIDUES 47-65' ? 3 non-polymer syn "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" 538.215 1 ? ? ? ? 4 water nat water 18.015 93 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'eIF-4E, eIF4E, mRNA cap-binding protein, eIF-4F 25 kDa subunit' 2 'eIF4E-binding protein 2, 4E-BP2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEK NKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKER LGLPPKIVIGYQSHADTATKSGSTTKNRFVV ; ;EVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEK NKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKER LGLPPKIVIGYQSHADTATKSGSTTKNRFVV ; A ? 2 'polypeptide(L)' no no PGGTRIIYDRKFLLDRRNS PGGTRIIYDRKFLLDRRNS B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 VAL n 1 3 ALA n 1 4 ASN n 1 5 PRO n 1 6 GLU n 1 7 HIS n 1 8 TYR n 1 9 ILE n 1 10 LYS n 1 11 HIS n 1 12 PRO n 1 13 LEU n 1 14 GLN n 1 15 ASN n 1 16 ARG n 1 17 TRP n 1 18 ALA n 1 19 LEU n 1 20 TRP n 1 21 PHE n 1 22 PHE n 1 23 LYS n 1 24 ASN n 1 25 ASP n 1 26 LYS n 1 27 SER n 1 28 LYS n 1 29 THR n 1 30 TRP n 1 31 GLN n 1 32 ALA n 1 33 ASN n 1 34 LEU n 1 35 ARG n 1 36 LEU n 1 37 ILE n 1 38 SER n 1 39 LYS n 1 40 PHE n 1 41 ASP n 1 42 THR n 1 43 VAL n 1 44 GLU n 1 45 ASP n 1 46 PHE n 1 47 TRP n 1 48 ALA n 1 49 LEU n 1 50 TYR n 1 51 ASN n 1 52 HIS n 1 53 ILE n 1 54 GLN n 1 55 LEU n 1 56 SER n 1 57 SER n 1 58 ASN n 1 59 LEU n 1 60 MET n 1 61 PRO n 1 62 GLY n 1 63 CYS n 1 64 ASP n 1 65 TYR n 1 66 SER n 1 67 LEU n 1 68 PHE n 1 69 LYS n 1 70 ASP n 1 71 GLY n 1 72 ILE n 1 73 GLU n 1 74 PRO n 1 75 MET n 1 76 TRP n 1 77 GLU n 1 78 ASP n 1 79 GLU n 1 80 LYS n 1 81 ASN n 1 82 LYS n 1 83 ARG n 1 84 GLY n 1 85 GLY n 1 86 ARG n 1 87 TRP n 1 88 LEU n 1 89 ILE n 1 90 THR n 1 91 LEU n 1 92 ASN n 1 93 LYS n 1 94 GLN n 1 95 GLN n 1 96 ARG n 1 97 ARG n 1 98 SER n 1 99 ASP n 1 100 LEU n 1 101 ASP n 1 102 ARG n 1 103 PHE n 1 104 TRP n 1 105 LEU n 1 106 GLU n 1 107 THR n 1 108 LEU n 1 109 LEU n 1 110 CYS n 1 111 LEU n 1 112 ILE n 1 113 GLY n 1 114 GLU n 1 115 SER n 1 116 PHE n 1 117 ASP n 1 118 ASP n 1 119 TYR n 1 120 SER n 1 121 ASP n 1 122 ASP n 1 123 VAL n 1 124 CYS n 1 125 GLY n 1 126 ALA n 1 127 VAL n 1 128 VAL n 1 129 ASN n 1 130 VAL n 1 131 ARG n 1 132 ALA n 1 133 LYS n 1 134 GLY n 1 135 ASP n 1 136 LYS n 1 137 ILE n 1 138 ALA n 1 139 ILE n 1 140 TRP n 1 141 THR n 1 142 THR n 1 143 GLU n 1 144 CYS n 1 145 GLU n 1 146 ASN n 1 147 ARG n 1 148 GLU n 1 149 ALA n 1 150 VAL n 1 151 THR n 1 152 HIS n 1 153 ILE n 1 154 GLY n 1 155 ARG n 1 156 VAL n 1 157 TYR n 1 158 LYS n 1 159 GLU n 1 160 ARG n 1 161 LEU n 1 162 GLY n 1 163 LEU n 1 164 PRO n 1 165 PRO n 1 166 LYS n 1 167 ILE n 1 168 VAL n 1 169 ILE n 1 170 GLY n 1 171 TYR n 1 172 GLN n 1 173 SER n 1 174 HIS n 1 175 ALA n 1 176 ASP n 1 177 THR n 1 178 ALA n 1 179 THR n 1 180 LYS n 1 181 SER n 1 182 GLY n 1 183 SER n 1 184 THR n 1 185 THR n 1 186 LYS n 1 187 ASN n 1 188 ARG n 1 189 PHE n 1 190 VAL n 1 191 VAL n 2 1 PRO n 2 2 GLY n 2 3 GLY n 2 4 THR n 2 5 ARG n 2 6 ILE n 2 7 ILE n 2 8 TYR n 2 9 ASP n 2 10 ARG n 2 11 LYS n 2 12 PHE n 2 13 LEU n 2 14 LEU n 2 15 ASP n 2 16 ARG n 2 17 ARG n 2 18 ASN n 2 19 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'EIF4E, EIF4EL1, EIF4F' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? human ? EIF4EBP2 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP IF4E_HUMAN P06730 1 ;EVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEK NKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKER LGLPPKIVIGYQSHADTATKSGSTTKNRFVV ; 27 ? 2 UNP 4EBP2_HUMAN Q13542 2 PGGTRIIYDRKFLLDRRNS 47 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3AM7 A 1 ? 191 ? P06730 27 ? 217 ? 27 217 2 2 3AM7 B 1 ? 19 ? Q13542 47 ? 65 ? 47 65 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MGP non-polymer . "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" ? 'C11 H19 N5 O14 P3 1' 538.215 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3AM7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_percent_sol 58.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '20% PEG-MME 2000, 0.1M MES, 0.2M ammonium sulfate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS VII' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3AM7 _reflns.observed_criterion_sigma_I 3 _reflns.observed_criterion_sigma_F 3 _reflns.d_resolution_low 43.9 _reflns.d_resolution_high 2.1 _reflns.number_obs 16434 _reflns.number_all ? _reflns.percent_possible_obs 95.4 _reflns.pdbx_Rmerge_I_obs 0.101 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.81 _reflns.pdbx_netI_over_sigmaI 8.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 43.9 _reflns_shell.percent_possible_all 95.4 _reflns_shell.Rmerge_I_obs 0.101 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.0 _reflns_shell.pdbx_redundancy 3.81 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 16434 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3AM7 _refine.ls_number_reflns_obs 14502 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.3 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs 97.1 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23 _refine.ls_R_factor_R_free 0.268 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 734 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3AM7 _refine_analyze.Luzzati_coordinate_error_obs 0.28 _refine_analyze.Luzzati_sigma_a_obs 0.19 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1725 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 1851 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 29.3 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.685 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.31 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 3AM7 _struct.title 'Crystal structure of the ternary complex of eIF4E-M7GTP-4EBP2 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3AM7 _struct_keywords.pdbx_keywords 'TRANSLATION/PROTEIN BINDING' _struct_keywords.text 'Cap, TRANSLATION, PROTEIN-PROTEIN COMPLEX, TRANSLATION-PROTEIN BINDING complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 4 ? TYR A 8 ? ASN A 30 TYR A 34 5 ? 5 HELX_P HELX_P2 2 VAL A 43 ? ILE A 53 ? VAL A 69 ILE A 79 1 ? 11 HELX_P HELX_P3 3 LEU A 55 ? LEU A 59 ? LEU A 81 LEU A 85 5 ? 5 HELX_P HELX_P4 4 GLN A 94 ? ASP A 99 ? GLN A 120 ASP A 125 1 ? 6 HELX_P HELX_P5 5 ASP A 99 ? GLY A 113 ? ASP A 125 GLY A 139 1 ? 15 HELX_P HELX_P6 6 PHE A 116 ? ASP A 121 ? PHE A 142 ASP A 147 5 ? 6 HELX_P HELX_P7 7 ASN A 146 ? GLY A 162 ? ASN A 172 GLY A 188 1 ? 17 HELX_P HELX_P8 8 ALA A 175 ? THR A 177 ? ALA A 201 THR A 203 5 ? 3 HELX_P HELX_P9 9 ASP B 9 ? ASP B 15 ? ASP B 55 ASP B 61 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 36 ? THR A 42 ? LEU A 62 THR A 68 A 2 PRO A 12 ? LYS A 23 ? PRO A 38 LYS A 49 A 3 CYS A 63 ? LYS A 69 ? CYS A 89 LYS A 95 A 4 VAL A 123 ? ASN A 129 ? VAL A 149 ASN A 155 A 5 LYS A 136 ? THR A 141 ? LYS A 162 THR A 167 A 6 GLY A 85 ? THR A 90 ? GLY A 111 THR A 116 A 7 GLY A 170 ? SER A 173 ? GLY A 196 SER A 199 A 8 PHE A 189 ? VAL A 190 ? PHE A 215 VAL A 216 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 37 ? O ILE A 63 N LEU A 19 ? N LEU A 45 A 2 3 N TRP A 20 ? N TRP A 46 O SER A 66 ? O SER A 92 A 3 4 N TYR A 65 ? N TYR A 91 O VAL A 128 ? O VAL A 154 A 4 5 N ASN A 129 ? N ASN A 155 O LYS A 136 ? O LYS A 162 A 5 6 O ILE A 137 ? O ILE A 163 N ILE A 89 ? N ILE A 115 A 6 7 N ARG A 86 ? N ARG A 112 O GLN A 172 ? O GLN A 198 A 7 8 N TYR A 171 ? N TYR A 197 O PHE A 189 ? O PHE A 215 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MGP _struct_site.pdbx_auth_seq_id 1000 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 16 _struct_site.details 'BINDING SITE FOR RESIDUE MGP A 1000' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 HOH D . ? HOH A 18 . ? 1_555 ? 2 AC1 16 HOH D . ? HOH A 21 . ? 1_555 ? 3 AC1 16 TRP A 30 ? TRP A 56 . ? 1_555 ? 4 AC1 16 MET A 75 ? MET A 101 . ? 1_555 ? 5 AC1 16 TRP A 76 ? TRP A 102 . ? 1_555 ? 6 AC1 16 GLU A 77 ? GLU A 103 . ? 1_555 ? 7 AC1 16 ARG A 131 ? ARG A 157 . ? 1_555 ? 8 AC1 16 LYS A 133 ? LYS A 159 . ? 1_555 ? 9 AC1 16 LYS A 136 ? LYS A 162 . ? 1_555 ? 10 AC1 16 PRO A 165 ? PRO A 191 . ? 3_554 ? 11 AC1 16 LYS A 166 ? LYS A 192 . ? 3_554 ? 12 AC1 16 VAL A 168 ? VAL A 194 . ? 3_554 ? 13 AC1 16 VAL A 191 ? VAL A 217 . ? 3_554 ? 14 AC1 16 HOH D . ? HOH A 234 . ? 1_555 ? 15 AC1 16 HOH D . ? HOH A 241 . ? 1_555 ? 16 AC1 16 HOH D . ? HOH A 271 . ? 1_555 ? # _database_PDB_matrix.entry_id 3AM7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3AM7 _atom_sites.fract_transf_matrix[1][1] 0.011384 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011384 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026490 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 27 27 GLU GLU A . n A 1 2 VAL 2 28 28 VAL VAL A . n A 1 3 ALA 3 29 29 ALA ALA A . n A 1 4 ASN 4 30 30 ASN ASN A . n A 1 5 PRO 5 31 31 PRO PRO A . n A 1 6 GLU 6 32 32 GLU GLU A . n A 1 7 HIS 7 33 33 HIS HIS A . n A 1 8 TYR 8 34 34 TYR TYR A . n A 1 9 ILE 9 35 35 ILE ILE A . n A 1 10 LYS 10 36 36 LYS LYS A . n A 1 11 HIS 11 37 37 HIS HIS A . n A 1 12 PRO 12 38 38 PRO PRO A . n A 1 13 LEU 13 39 39 LEU LEU A . n A 1 14 GLN 14 40 40 GLN GLN A . n A 1 15 ASN 15 41 41 ASN ASN A . n A 1 16 ARG 16 42 42 ARG ARG A . n A 1 17 TRP 17 43 43 TRP TRP A . n A 1 18 ALA 18 44 44 ALA ALA A . n A 1 19 LEU 19 45 45 LEU LEU A . n A 1 20 TRP 20 46 46 TRP TRP A . n A 1 21 PHE 21 47 47 PHE PHE A . n A 1 22 PHE 22 48 48 PHE PHE A . n A 1 23 LYS 23 49 49 LYS LYS A . n A 1 24 ASN 24 50 50 ASN ASN A . n A 1 25 ASP 25 51 51 ASP ASP A . n A 1 26 LYS 26 52 52 LYS LYS A . n A 1 27 SER 27 53 53 SER SER A . n A 1 28 LYS 28 54 54 LYS LYS A . n A 1 29 THR 29 55 55 THR THR A . n A 1 30 TRP 30 56 56 TRP TRP A . n A 1 31 GLN 31 57 57 GLN GLN A . n A 1 32 ALA 32 58 58 ALA ALA A . n A 1 33 ASN 33 59 59 ASN ASN A . n A 1 34 LEU 34 60 ? ? ? A . n A 1 35 ARG 35 61 61 ARG ARG A . n A 1 36 LEU 36 62 62 LEU LEU A . n A 1 37 ILE 37 63 63 ILE ILE A . n A 1 38 SER 38 64 64 SER SER A . n A 1 39 LYS 39 65 65 LYS LYS A . n A 1 40 PHE 40 66 66 PHE PHE A . n A 1 41 ASP 41 67 67 ASP ASP A . n A 1 42 THR 42 68 68 THR THR A . n A 1 43 VAL 43 69 69 VAL VAL A . n A 1 44 GLU 44 70 70 GLU GLU A . n A 1 45 ASP 45 71 71 ASP ASP A . n A 1 46 PHE 46 72 72 PHE PHE A . n A 1 47 TRP 47 73 73 TRP TRP A . n A 1 48 ALA 48 74 74 ALA ALA A . n A 1 49 LEU 49 75 75 LEU LEU A . n A 1 50 TYR 50 76 76 TYR TYR A . n A 1 51 ASN 51 77 77 ASN ASN A . n A 1 52 HIS 52 78 78 HIS HIS A . n A 1 53 ILE 53 79 79 ILE ILE A . n A 1 54 GLN 54 80 80 GLN GLN A . n A 1 55 LEU 55 81 81 LEU LEU A . n A 1 56 SER 56 82 82 SER SER A . n A 1 57 SER 57 83 83 SER SER A . n A 1 58 ASN 58 84 84 ASN ASN A . n A 1 59 LEU 59 85 85 LEU LEU A . n A 1 60 MET 60 86 86 MET MET A . n A 1 61 PRO 61 87 87 PRO PRO A . n A 1 62 GLY 62 88 88 GLY GLY A . n A 1 63 CYS 63 89 89 CYS CYS A . n A 1 64 ASP 64 90 90 ASP ASP A . n A 1 65 TYR 65 91 91 TYR TYR A . n A 1 66 SER 66 92 92 SER SER A . n A 1 67 LEU 67 93 93 LEU LEU A . n A 1 68 PHE 68 94 94 PHE PHE A . n A 1 69 LYS 69 95 95 LYS LYS A . n A 1 70 ASP 70 96 96 ASP ASP A . n A 1 71 GLY 71 97 97 GLY GLY A . n A 1 72 ILE 72 98 98 ILE ILE A . n A 1 73 GLU 73 99 99 GLU GLU A . n A 1 74 PRO 74 100 100 PRO PRO A . n A 1 75 MET 75 101 101 MET MET A . n A 1 76 TRP 76 102 102 TRP TRP A . n A 1 77 GLU 77 103 103 GLU GLU A . n A 1 78 ASP 78 104 104 ASP ASP A . n A 1 79 GLU 79 105 105 GLU GLU A . n A 1 80 LYS 80 106 106 LYS LYS A . n A 1 81 ASN 81 107 107 ASN ASN A . n A 1 82 LYS 82 108 108 LYS LYS A . n A 1 83 ARG 83 109 109 ARG ARG A . n A 1 84 GLY 84 110 110 GLY GLY A . n A 1 85 GLY 85 111 111 GLY GLY A . n A 1 86 ARG 86 112 112 ARG ARG A . n A 1 87 TRP 87 113 113 TRP TRP A . n A 1 88 LEU 88 114 114 LEU LEU A . n A 1 89 ILE 89 115 115 ILE ILE A . n A 1 90 THR 90 116 116 THR THR A . n A 1 91 LEU 91 117 117 LEU LEU A . n A 1 92 ASN 92 118 118 ASN ASN A . n A 1 93 LYS 93 119 119 LYS LYS A . n A 1 94 GLN 94 120 120 GLN GLN A . n A 1 95 GLN 95 121 121 GLN GLN A . n A 1 96 ARG 96 122 122 ARG ARG A . n A 1 97 ARG 97 123 123 ARG ARG A . n A 1 98 SER 98 124 124 SER SER A . n A 1 99 ASP 99 125 125 ASP ASP A . n A 1 100 LEU 100 126 126 LEU LEU A . n A 1 101 ASP 101 127 127 ASP ASP A . n A 1 102 ARG 102 128 128 ARG ARG A . n A 1 103 PHE 103 129 129 PHE PHE A . n A 1 104 TRP 104 130 130 TRP TRP A . n A 1 105 LEU 105 131 131 LEU LEU A . n A 1 106 GLU 106 132 132 GLU GLU A . n A 1 107 THR 107 133 133 THR THR A . n A 1 108 LEU 108 134 134 LEU LEU A . n A 1 109 LEU 109 135 135 LEU LEU A . n A 1 110 CYS 110 136 136 CYS CYS A . n A 1 111 LEU 111 137 137 LEU LEU A . n A 1 112 ILE 112 138 138 ILE ILE A . n A 1 113 GLY 113 139 139 GLY GLY A . n A 1 114 GLU 114 140 140 GLU GLU A . n A 1 115 SER 115 141 141 SER SER A . n A 1 116 PHE 116 142 142 PHE PHE A . n A 1 117 ASP 117 143 143 ASP ASP A . n A 1 118 ASP 118 144 144 ASP ASP A . n A 1 119 TYR 119 145 145 TYR TYR A . n A 1 120 SER 120 146 146 SER SER A . n A 1 121 ASP 121 147 147 ASP ASP A . n A 1 122 ASP 122 148 148 ASP ASP A . n A 1 123 VAL 123 149 149 VAL VAL A . n A 1 124 CYS 124 150 150 CYS CYS A . n A 1 125 GLY 125 151 151 GLY GLY A . n A 1 126 ALA 126 152 152 ALA ALA A . n A 1 127 VAL 127 153 153 VAL VAL A . n A 1 128 VAL 128 154 154 VAL VAL A . n A 1 129 ASN 129 155 155 ASN ASN A . n A 1 130 VAL 130 156 156 VAL VAL A . n A 1 131 ARG 131 157 157 ARG ARG A . n A 1 132 ALA 132 158 158 ALA ALA A . n A 1 133 LYS 133 159 159 LYS LYS A . n A 1 134 GLY 134 160 160 GLY GLY A . n A 1 135 ASP 135 161 161 ASP ASP A . n A 1 136 LYS 136 162 162 LYS LYS A . n A 1 137 ILE 137 163 163 ILE ILE A . n A 1 138 ALA 138 164 164 ALA ALA A . n A 1 139 ILE 139 165 165 ILE ILE A . n A 1 140 TRP 140 166 166 TRP TRP A . n A 1 141 THR 141 167 167 THR THR A . n A 1 142 THR 142 168 168 THR THR A . n A 1 143 GLU 143 169 169 GLU GLU A . n A 1 144 CYS 144 170 170 CYS CYS A . n A 1 145 GLU 145 171 171 GLU GLU A . n A 1 146 ASN 146 172 172 ASN ASN A . n A 1 147 ARG 147 173 173 ARG ARG A . n A 1 148 GLU 148 174 174 GLU GLU A . n A 1 149 ALA 149 175 175 ALA ALA A . n A 1 150 VAL 150 176 176 VAL VAL A . n A 1 151 THR 151 177 177 THR THR A . n A 1 152 HIS 152 178 178 HIS HIS A . n A 1 153 ILE 153 179 179 ILE ILE A . n A 1 154 GLY 154 180 180 GLY GLY A . n A 1 155 ARG 155 181 181 ARG ARG A . n A 1 156 VAL 156 182 182 VAL VAL A . n A 1 157 TYR 157 183 183 TYR TYR A . n A 1 158 LYS 158 184 184 LYS LYS A . n A 1 159 GLU 159 185 185 GLU GLU A . n A 1 160 ARG 160 186 186 ARG ARG A . n A 1 161 LEU 161 187 187 LEU LEU A . n A 1 162 GLY 162 188 188 GLY GLY A . n A 1 163 LEU 163 189 189 LEU LEU A . n A 1 164 PRO 164 190 190 PRO PRO A . n A 1 165 PRO 165 191 191 PRO PRO A . n A 1 166 LYS 166 192 192 LYS LYS A . n A 1 167 ILE 167 193 193 ILE ILE A . n A 1 168 VAL 168 194 194 VAL VAL A . n A 1 169 ILE 169 195 195 ILE ILE A . n A 1 170 GLY 170 196 196 GLY GLY A . n A 1 171 TYR 171 197 197 TYR TYR A . n A 1 172 GLN 172 198 198 GLN GLN A . n A 1 173 SER 173 199 199 SER SER A . n A 1 174 HIS 174 200 200 HIS HIS A . n A 1 175 ALA 175 201 201 ALA ALA A . n A 1 176 ASP 176 202 202 ASP ASP A . n A 1 177 THR 177 203 203 THR THR A . n A 1 178 ALA 178 204 204 ALA ALA A . n A 1 179 THR 179 205 205 THR THR A . n A 1 180 LYS 180 206 206 LYS LYS A . n A 1 181 SER 181 207 207 SER SER A . n A 1 182 GLY 182 208 208 GLY GLY A . n A 1 183 SER 183 209 209 SER SER A . n A 1 184 THR 184 210 210 THR THR A . n A 1 185 THR 185 211 211 THR THR A . n A 1 186 LYS 186 212 212 LYS LYS A . n A 1 187 ASN 187 213 213 ASN ASN A . n A 1 188 ARG 188 214 214 ARG ARG A . n A 1 189 PHE 189 215 215 PHE PHE A . n A 1 190 VAL 190 216 216 VAL VAL A . n A 1 191 VAL 191 217 217 VAL VAL A . n B 2 1 PRO 1 47 47 PRO PRO B . n B 2 2 GLY 2 48 48 GLY GLY B . n B 2 3 GLY 3 49 49 GLY GLY B . n B 2 4 THR 4 50 50 THR THR B . n B 2 5 ARG 5 51 51 ARG ARG B . n B 2 6 ILE 6 52 52 ILE ILE B . n B 2 7 ILE 7 53 53 ILE ILE B . n B 2 8 TYR 8 54 54 TYR TYR B . n B 2 9 ASP 9 55 55 ASP ASP B . n B 2 10 ARG 10 56 56 ARG ARG B . n B 2 11 LYS 11 57 57 LYS LYS B . n B 2 12 PHE 12 58 58 PHE PHE B . n B 2 13 LEU 13 59 59 LEU LEU B . n B 2 14 LEU 14 60 60 LEU LEU B . n B 2 15 ASP 15 61 61 ASP ASP B . n B 2 16 ARG 16 62 62 ARG ARG B . n B 2 17 ARG 17 63 63 ARG ARG B . n B 2 18 ASN 18 64 64 ASN ASN B . n B 2 19 SER 19 65 65 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGP 1 1000 1000 MGP M7G A . D 4 HOH 1 1 1 HOH HOH A . D 4 HOH 2 2 2 HOH HOH A . D 4 HOH 3 3 3 HOH HOH A . D 4 HOH 4 4 4 HOH HOH A . D 4 HOH 5 5 5 HOH HOH A . D 4 HOH 6 6 6 HOH HOH A . D 4 HOH 7 7 7 HOH HOH A . D 4 HOH 8 8 8 HOH HOH A . D 4 HOH 9 9 9 HOH HOH A . D 4 HOH 10 10 10 HOH HOH A . D 4 HOH 11 11 11 HOH HOH A . D 4 HOH 12 12 12 HOH HOH A . D 4 HOH 13 13 13 HOH HOH A . D 4 HOH 14 14 14 HOH HOH A . D 4 HOH 15 15 15 HOH HOH A . D 4 HOH 16 16 16 HOH HOH A . D 4 HOH 17 17 17 HOH HOH A . D 4 HOH 18 18 18 HOH HOH A . D 4 HOH 19 20 20 HOH HOH A . D 4 HOH 20 21 21 HOH HOH A . D 4 HOH 21 22 22 HOH HOH A . D 4 HOH 22 23 23 HOH HOH A . D 4 HOH 23 24 24 HOH HOH A . D 4 HOH 24 25 25 HOH HOH A . D 4 HOH 25 26 26 HOH HOH A . D 4 HOH 26 218 27 HOH HOH A . D 4 HOH 27 219 28 HOH HOH A . D 4 HOH 28 220 29 HOH HOH A . D 4 HOH 29 221 30 HOH HOH A . D 4 HOH 30 222 31 HOH HOH A . D 4 HOH 31 223 32 HOH HOH A . D 4 HOH 32 224 33 HOH HOH A . D 4 HOH 33 225 34 HOH HOH A . D 4 HOH 34 226 35 HOH HOH A . D 4 HOH 35 227 36 HOH HOH A . D 4 HOH 36 228 37 HOH HOH A . D 4 HOH 37 229 38 HOH HOH A . D 4 HOH 38 230 39 HOH HOH A . D 4 HOH 39 231 40 HOH HOH A . D 4 HOH 40 232 41 HOH HOH A . D 4 HOH 41 233 42 HOH HOH A . D 4 HOH 42 234 43 HOH HOH A . D 4 HOH 43 235 44 HOH HOH A . D 4 HOH 44 236 45 HOH HOH A . D 4 HOH 45 237 46 HOH HOH A . D 4 HOH 46 238 47 HOH HOH A . D 4 HOH 47 239 48 HOH HOH A . D 4 HOH 48 240 50 HOH HOH A . D 4 HOH 49 241 51 HOH HOH A . D 4 HOH 50 242 52 HOH HOH A . D 4 HOH 51 243 54 HOH HOH A . D 4 HOH 52 244 55 HOH HOH A . D 4 HOH 53 245 56 HOH HOH A . D 4 HOH 54 246 57 HOH HOH A . D 4 HOH 55 247 58 HOH HOH A . D 4 HOH 56 248 59 HOH HOH A . D 4 HOH 57 249 60 HOH HOH A . D 4 HOH 58 250 61 HOH HOH A . D 4 HOH 59 251 62 HOH HOH A . D 4 HOH 60 252 63 HOH HOH A . D 4 HOH 61 253 64 HOH HOH A . D 4 HOH 62 254 65 HOH HOH A . D 4 HOH 63 255 66 HOH HOH A . D 4 HOH 64 256 67 HOH HOH A . D 4 HOH 65 257 68 HOH HOH A . D 4 HOH 66 258 69 HOH HOH A . D 4 HOH 67 259 70 HOH HOH A . D 4 HOH 68 260 72 HOH HOH A . D 4 HOH 69 261 73 HOH HOH A . D 4 HOH 70 262 74 HOH HOH A . D 4 HOH 71 263 75 HOH HOH A . D 4 HOH 72 264 77 HOH HOH A . D 4 HOH 73 265 78 HOH HOH A . D 4 HOH 74 266 79 HOH HOH A . D 4 HOH 75 267 80 HOH HOH A . D 4 HOH 76 268 81 HOH HOH A . D 4 HOH 77 269 82 HOH HOH A . D 4 HOH 78 270 83 HOH HOH A . D 4 HOH 79 271 84 HOH HOH A . D 4 HOH 80 272 85 HOH HOH A . D 4 HOH 81 273 87 HOH HOH A . D 4 HOH 82 274 88 HOH HOH A . D 4 HOH 83 275 90 HOH HOH A . D 4 HOH 84 276 91 HOH HOH A . D 4 HOH 85 277 92 HOH HOH A . D 4 HOH 86 278 94 HOH HOH A . E 4 HOH 1 19 19 HOH HOH B . E 4 HOH 2 66 49 HOH HOH B . E 4 HOH 3 67 53 HOH HOH B . E 4 HOH 4 71 71 HOH HOH B . E 4 HOH 5 86 86 HOH HOH B . E 4 HOH 6 89 89 HOH HOH B . E 4 HOH 7 93 93 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1510 ? 1 MORE -4 ? 1 'SSA (A^2)' 11730 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-17 2 'Structure model' 1 1 2023-04-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_citation_author.name' 14 2 'Structure model' '_database_2.pdbx_DOI' 15 2 'Structure model' '_database_2.pdbx_database_accession' 16 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 CNS refinement . ? 2 CrystalClear 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 34 ? ? -140.27 -0.72 2 1 LYS A 52 ? ? 63.45 -37.97 3 1 LYS A 54 ? ? -49.98 161.99 4 1 ILE A 63 ? ? -94.28 -68.08 5 1 ASP A 67 ? ? -146.92 27.68 6 1 ASP A 143 ? ? 54.99 -138.00 7 1 LYS A 206 ? ? -168.56 -57.03 8 1 SER A 207 ? ? 172.39 10.58 9 1 SER A 209 ? ? 17.83 49.37 10 1 THR A 210 ? ? 37.14 93.34 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id LEU _pdbx_unobs_or_zero_occ_residues.auth_seq_id 60 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id LEU _pdbx_unobs_or_zero_occ_residues.label_seq_id 34 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" MGP 4 water HOH #