data_3AP9 # _entry.id 3AP9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3AP9 pdb_00003ap9 10.2210/pdb3ap9/pdb RCSB RCSB029528 ? ? WWPDB D_1000029528 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3AP4 'The same protein complexed with lactose.' unspecified PDB 3AP5 'The same protein in apo form.' unspecified PDB 3AP6 ;The same protein complexed with lactose 3'-sulfate. ; unspecified PDB 3AP7 'The same protein complexed with lactose sialic acid.' unspecified PDB 3APB 'The same protein complexed with iodide.' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3AP9 _pdbx_database_status.recvd_initial_deposition_date 2010-10-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Matsuzaka, T.' 1 'Ideo, H.' 2 'Yamashita, K.' 3 'Nonaka, T.' 4 # _citation.id primary _citation.title 'Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 11346 _citation.page_last 11355 _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21288902 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.195925 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ideo, H.' 1 ? primary 'Matsuzaka, T.' 2 ? primary 'Nonaka, T.' 3 ? primary 'Seko, A.' 4 ? primary 'Yamashita, K.' 5 ? # _cell.entry_id 3AP9 _cell.length_a 46.419 _cell.length_b 49.952 _cell.length_c 70.207 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3AP9 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Galectin-8 17423.123 1 ? ? 'N-terminal carbohydrate recognition domain' ? 2 branched man ;alpha-L-fucopyranose-(1-3)-[beta-D-galactopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose ; 853.771 1 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 5 water nat water 18.015 260 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Gal-8, Po66 carbohydrate-binding protein, Po66-CBP, Prostate carcinoma tumor antigen 1, PCTA-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MMLSLNNLQNIIYNPVIPFVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSVKPRADVAFHFNPRFKRAGCIVCNT LINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSFS ; _entity_poly.pdbx_seq_one_letter_code_can ;MMLSLNNLQNIIYNPVIPFVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSVKPRADVAFHFNPRFKRAGCIVCNT LINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSFS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 MET n 1 3 LEU n 1 4 SER n 1 5 LEU n 1 6 ASN n 1 7 ASN n 1 8 LEU n 1 9 GLN n 1 10 ASN n 1 11 ILE n 1 12 ILE n 1 13 TYR n 1 14 ASN n 1 15 PRO n 1 16 VAL n 1 17 ILE n 1 18 PRO n 1 19 PHE n 1 20 VAL n 1 21 GLY n 1 22 THR n 1 23 ILE n 1 24 PRO n 1 25 ASP n 1 26 GLN n 1 27 LEU n 1 28 ASP n 1 29 PRO n 1 30 GLY n 1 31 THR n 1 32 LEU n 1 33 ILE n 1 34 VAL n 1 35 ILE n 1 36 ARG n 1 37 GLY n 1 38 HIS n 1 39 VAL n 1 40 PRO n 1 41 SER n 1 42 ASP n 1 43 ALA n 1 44 ASP n 1 45 ARG n 1 46 PHE n 1 47 GLN n 1 48 VAL n 1 49 ASP n 1 50 LEU n 1 51 GLN n 1 52 ASN n 1 53 GLY n 1 54 SER n 1 55 SER n 1 56 VAL n 1 57 LYS n 1 58 PRO n 1 59 ARG n 1 60 ALA n 1 61 ASP n 1 62 VAL n 1 63 ALA n 1 64 PHE n 1 65 HIS n 1 66 PHE n 1 67 ASN n 1 68 PRO n 1 69 ARG n 1 70 PHE n 1 71 LYS n 1 72 ARG n 1 73 ALA n 1 74 GLY n 1 75 CYS n 1 76 ILE n 1 77 VAL n 1 78 CYS n 1 79 ASN n 1 80 THR n 1 81 LEU n 1 82 ILE n 1 83 ASN n 1 84 GLU n 1 85 LYS n 1 86 TRP n 1 87 GLY n 1 88 ARG n 1 89 GLU n 1 90 GLU n 1 91 ILE n 1 92 THR n 1 93 TYR n 1 94 ASP n 1 95 THR n 1 96 PRO n 1 97 PHE n 1 98 LYS n 1 99 ARG n 1 100 GLU n 1 101 LYS n 1 102 SER n 1 103 PHE n 1 104 GLU n 1 105 ILE n 1 106 VAL n 1 107 ILE n 1 108 MET n 1 109 VAL n 1 110 LEU n 1 111 LYS n 1 112 ASP n 1 113 LYS n 1 114 PHE n 1 115 GLN n 1 116 VAL n 1 117 ALA n 1 118 VAL n 1 119 ASN n 1 120 GLY n 1 121 LYS n 1 122 HIS n 1 123 THR n 1 124 LEU n 1 125 LEU n 1 126 TYR n 1 127 GLY n 1 128 HIS n 1 129 ARG n 1 130 ILE n 1 131 GLY n 1 132 PRO n 1 133 GLU n 1 134 LYS n 1 135 ILE n 1 136 ASP n 1 137 THR n 1 138 LEU n 1 139 GLY n 1 140 ILE n 1 141 TYR n 1 142 GLY n 1 143 LYS n 1 144 VAL n 1 145 ASN n 1 146 ILE n 1 147 HIS n 1 148 SER n 1 149 ILE n 1 150 GLY n 1 151 PHE n 1 152 SER n 1 153 PHE n 1 154 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LGALS8 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-6P-2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LEG8_HUMAN _struct_ref.pdbx_db_accession O00214 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MMLSLNNLQNIIYNPVIPFVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNT LINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSFS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3AP9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 154 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O00214 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 154 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 154 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3AP9 _struct_ref_seq_dif.mon_id VAL _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 56 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O00214 _struct_ref_seq_dif.db_mon_id MET _struct_ref_seq_dif.pdbx_seq_db_seq_num 56 _struct_ref_seq_dif.details 'SEE REMARK 999' _struct_ref_seq_dif.pdbx_auth_seq_num 56 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3AP9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_percent_sol 47.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;0.275mM protein, 10mM Hepes-NaOH, 2.75mM Lacto-N-fucopentaose III, 50mM sodium chloride, 0.5mM DTT, 50mM ammonium fluoride, 12% PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2006-02-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Numerical link type Si(111) double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000000 # _reflns.entry_id 3AP9 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 24.977 _reflns.d_resolution_high 1.330 _reflns.number_obs 37685 _reflns.number_all 37685 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_Rsym_value 0.041 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 9.616 _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.33 _reflns_shell.d_res_low 1.36 _reflns_shell.percent_possible_all 97.4 _reflns_shell.Rmerge_I_obs 0.231 _reflns_shell.pdbx_Rsym_value 0.231 _reflns_shell.meanI_over_sigI_obs 9.4 _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2712 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3AP9 _refine.ls_number_reflns_obs 35696 _refine.ls_number_reflns_all 35696 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.977 _refine.ls_d_res_high 1.33 _refine.ls_percent_reflns_obs 98.34 _refine.ls_R_factor_obs 0.15773 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15666 _refine.ls_R_factor_R_free 0.17824 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1878 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.955 _refine.B_iso_mean 8.336 _refine.aniso_B[1][1] 0.45 _refine.aniso_B[2][2] -0.31 _refine.aniso_B[3][3] -0.14 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3AP5' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.050 _refine.pdbx_overall_ESU_R_Free 0.051 _refine.overall_SU_ML 0.028 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.648 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1204 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 69 _refine_hist.number_atoms_solvent 260 _refine_hist.number_atoms_total 1533 _refine_hist.d_res_high 1.33 _refine_hist.d_res_low 24.977 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.022 ? 1351 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 925 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.242 1.999 ? 1847 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.749 2.998 ? 2273 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.840 5.000 ? 156 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.565 23.906 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.245 15.000 ? 223 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.009 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.075 0.200 ? 222 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.021 ? 1427 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 266 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.607 1.500 ? 773 'X-RAY DIFFRACTION' ? r_mcbond_other 0.129 1.500 ? 311 'X-RAY DIFFRACTION' ? r_mcangle_it 1.108 2.000 ? 1274 'X-RAY DIFFRACTION' ? r_scbond_it 1.481 3.000 ? 578 'X-RAY DIFFRACTION' ? r_scangle_it 2.284 4.500 ? 571 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.330 _refine_ls_shell.d_res_low 1.364 _refine_ls_shell.number_reflns_R_work 2561 _refine_ls_shell.R_factor_R_work 0.192 _refine_ls_shell.percent_reflns_obs 96.91 _refine_ls_shell.R_factor_R_free 0.224 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 134 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2695 _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3AP9 _struct.title 'Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with Lacto-N-fucopentaose III' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3AP9 _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'Beta-Sandwich, Galectin, Carbohydrate/Sugar Binding, Lacto-N-fucopentaose III, Sugar Binding Protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLY _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 131 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ILE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 135 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLY _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 131 _struct_conf.end_auth_comp_id ILE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 135 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B BGC . O4 ? ? ? 1_555 B GAL . C1 ? ? B BGC 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.418 ? ? covale2 covale both ? B GAL . O3 ? ? ? 1_555 B NAG . C1 ? ? B GAL 2 B NAG 3 1_555 ? ? ? ? ? ? ? 1.414 ? ? covale3 covale both ? B NAG . O3 ? ? ? 1_555 B FUC . C1 ? ? B NAG 3 B FUC 4 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B GAL . C1 ? ? B NAG 3 B GAL 5 1_555 ? ? ? ? ? ? ? 1.420 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 17 A . ? ILE 17 A PRO 18 A ? PRO 18 A 1 6.64 2 LYS 57 A . ? LYS 57 A PRO 58 A ? PRO 58 A 1 -5.25 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? C ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 9 ? TYR A 13 ? GLN A 9 TYR A 13 A 2 ASN A 145 ? SER A 152 ? ASN A 145 SER A 152 A 3 LEU A 32 ? HIS A 38 ? LEU A 32 HIS A 38 A 4 SER A 102 ? VAL A 109 ? SER A 102 VAL A 109 A 5 LYS A 113 ? VAL A 118 ? LYS A 113 VAL A 118 A 6 LYS A 121 ? GLY A 127 ? LYS A 121 GLY A 127 B 1 PHE A 19 ? THR A 22 ? PHE A 19 THR A 22 B 2 THR A 137 ? GLY A 142 ? THR A 137 GLY A 142 B 3 PHE A 46 ? ASN A 52 ? PHE A 46 ASN A 52 B 4 ASP A 61 ? ARG A 69 ? ASP A 61 ARG A 69 B 5 CYS A 75 ? ILE A 82 ? CYS A 75 ILE A 82 B 6 LYS A 85 ? TRP A 86 ? LYS A 85 TRP A 86 C 1 PHE A 19 ? THR A 22 ? PHE A 19 THR A 22 C 2 THR A 137 ? GLY A 142 ? THR A 137 GLY A 142 C 3 PHE A 46 ? ASN A 52 ? PHE A 46 ASN A 52 C 4 ASP A 61 ? ARG A 69 ? ASP A 61 ARG A 69 C 5 CYS A 75 ? ILE A 82 ? CYS A 75 ILE A 82 C 6 GLU A 90 ? THR A 92 ? GLU A 90 THR A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 9 ? N GLN A 9 O PHE A 151 ? O PHE A 151 A 2 3 O GLY A 150 ? O GLY A 150 N VAL A 34 ? N VAL A 34 A 3 4 N ILE A 35 ? N ILE A 35 O ILE A 105 ? O ILE A 105 A 4 5 N MET A 108 ? N MET A 108 O GLN A 115 ? O GLN A 115 A 5 6 N VAL A 116 ? N VAL A 116 O THR A 123 ? O THR A 123 B 1 2 N GLY A 21 ? N GLY A 21 O LEU A 138 ? O LEU A 138 B 2 3 O THR A 137 ? O THR A 137 N GLN A 51 ? N GLN A 51 B 3 4 N VAL A 48 ? N VAL A 48 O PHE A 66 ? O PHE A 66 B 4 5 N ARG A 69 ? N ARG A 69 O CYS A 75 ? O CYS A 75 B 5 6 N ILE A 82 ? N ILE A 82 O LYS A 85 ? O LYS A 85 C 1 2 N GLY A 21 ? N GLY A 21 O LEU A 138 ? O LEU A 138 C 2 3 O THR A 137 ? O THR A 137 N GLN A 51 ? N GLN A 51 C 3 4 N VAL A 48 ? N VAL A 48 O PHE A 66 ? O PHE A 66 C 4 5 N ARG A 69 ? N ARG A 69 O CYS A 75 ? O CYS A 75 C 5 6 N ILE A 76 ? N ILE A 76 O THR A 92 ? O THR A 92 # _database_PDB_matrix.entry_id 3AP9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3AP9 _atom_sites.fract_transf_matrix[1][1] 0.021543 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020019 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014244 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 MET 2 2 ? ? ? A . n A 1 3 LEU 3 3 ? ? ? A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 CYS 75 75 75 CYS CYS A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 CYS 78 78 78 CYS CYS A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 TRP 86 86 86 TRP TRP A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 MET 108 108 108 MET MET A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 HIS 122 122 122 HIS HIS A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 TYR 141 141 141 TYR TYR A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 HIS 147 147 147 HIS HIS A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 PHE 151 151 151 PHE PHE A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 SER 154 154 154 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD 1 160 160 MPD MPD A . D 4 CL 1 161 161 CL CL A . E 4 CL 1 162 162 CL CL A . F 4 CL 1 163 163 CL CL A . G 5 HOH 1 164 164 HOH HOH A . G 5 HOH 2 165 165 HOH HOH A . G 5 HOH 3 166 166 HOH HOH A . G 5 HOH 4 167 167 HOH HOH A . G 5 HOH 5 168 168 HOH HOH A . G 5 HOH 6 169 169 HOH HOH A . G 5 HOH 7 170 170 HOH HOH A . G 5 HOH 8 171 171 HOH HOH A . G 5 HOH 9 172 172 HOH HOH A . G 5 HOH 10 173 173 HOH HOH A . G 5 HOH 11 174 174 HOH HOH A . G 5 HOH 12 175 175 HOH HOH A . G 5 HOH 13 176 176 HOH HOH A . G 5 HOH 14 177 177 HOH HOH A . G 5 HOH 15 178 178 HOH HOH A . G 5 HOH 16 179 179 HOH HOH A . G 5 HOH 17 180 180 HOH HOH A . G 5 HOH 18 181 181 HOH HOH A . G 5 HOH 19 182 182 HOH HOH A . G 5 HOH 20 183 183 HOH HOH A . G 5 HOH 21 184 184 HOH HOH A . G 5 HOH 22 185 185 HOH HOH A . G 5 HOH 23 186 186 HOH HOH A . G 5 HOH 24 187 187 HOH HOH A . G 5 HOH 25 188 188 HOH HOH A . G 5 HOH 26 189 189 HOH HOH A . G 5 HOH 27 190 190 HOH HOH A . G 5 HOH 28 191 191 HOH HOH A . G 5 HOH 29 192 192 HOH HOH A . G 5 HOH 30 193 193 HOH HOH A . G 5 HOH 31 194 194 HOH HOH A . G 5 HOH 32 195 195 HOH HOH A . G 5 HOH 33 196 196 HOH HOH A . G 5 HOH 34 197 197 HOH HOH A . G 5 HOH 35 198 198 HOH HOH A . G 5 HOH 36 199 199 HOH HOH A . G 5 HOH 37 200 200 HOH HOH A . G 5 HOH 38 201 201 HOH HOH A . G 5 HOH 39 202 202 HOH HOH A . G 5 HOH 40 203 203 HOH HOH A . G 5 HOH 41 204 204 HOH HOH A . G 5 HOH 42 205 205 HOH HOH A . G 5 HOH 43 206 206 HOH HOH A . G 5 HOH 44 207 207 HOH HOH A . G 5 HOH 45 208 208 HOH HOH A . G 5 HOH 46 209 209 HOH HOH A . G 5 HOH 47 210 210 HOH HOH A . G 5 HOH 48 211 211 HOH HOH A . G 5 HOH 49 212 212 HOH HOH A . G 5 HOH 50 213 213 HOH HOH A . G 5 HOH 51 214 214 HOH HOH A . G 5 HOH 52 215 215 HOH HOH A . G 5 HOH 53 216 216 HOH HOH A . G 5 HOH 54 217 217 HOH HOH A . G 5 HOH 55 218 218 HOH HOH A . G 5 HOH 56 219 219 HOH HOH A . G 5 HOH 57 220 220 HOH HOH A . G 5 HOH 58 221 221 HOH HOH A . G 5 HOH 59 222 222 HOH HOH A . G 5 HOH 60 223 223 HOH HOH A . G 5 HOH 61 224 224 HOH HOH A . G 5 HOH 62 225 225 HOH HOH A . G 5 HOH 63 226 226 HOH HOH A . G 5 HOH 64 227 227 HOH HOH A . G 5 HOH 65 228 228 HOH HOH A . G 5 HOH 66 229 229 HOH HOH A . G 5 HOH 67 230 230 HOH HOH A . G 5 HOH 68 231 231 HOH HOH A . G 5 HOH 69 232 232 HOH HOH A . G 5 HOH 70 234 234 HOH HOH A . G 5 HOH 71 236 236 HOH HOH A . G 5 HOH 72 237 237 HOH HOH A . G 5 HOH 73 242 242 HOH HOH A . G 5 HOH 74 244 244 HOH HOH A . G 5 HOH 75 246 246 HOH HOH A . G 5 HOH 76 247 247 HOH HOH A . G 5 HOH 77 248 248 HOH HOH A . G 5 HOH 78 250 250 HOH HOH A . G 5 HOH 79 251 251 HOH HOH A . G 5 HOH 80 252 252 HOH HOH A . G 5 HOH 81 256 256 HOH HOH A . G 5 HOH 82 257 257 HOH HOH A . G 5 HOH 83 258 258 HOH HOH A . G 5 HOH 84 262 262 HOH HOH A . G 5 HOH 85 265 265 HOH HOH A . G 5 HOH 86 279 279 HOH HOH A . G 5 HOH 87 286 286 HOH HOH A . G 5 HOH 88 287 287 HOH HOH A . G 5 HOH 89 288 288 HOH HOH A . G 5 HOH 90 289 289 HOH HOH A . G 5 HOH 91 290 290 HOH HOH A . G 5 HOH 92 291 291 HOH HOH A . G 5 HOH 93 292 292 HOH HOH A . G 5 HOH 94 293 293 HOH HOH A . G 5 HOH 95 294 294 HOH HOH A . G 5 HOH 96 295 295 HOH HOH A . G 5 HOH 97 296 296 HOH HOH A . G 5 HOH 98 297 297 HOH HOH A . G 5 HOH 99 298 298 HOH HOH A . G 5 HOH 100 299 299 HOH HOH A . G 5 HOH 101 300 300 HOH HOH A . G 5 HOH 102 301 301 HOH HOH A . G 5 HOH 103 302 302 HOH HOH A . G 5 HOH 104 303 303 HOH HOH A . G 5 HOH 105 304 304 HOH HOH A . G 5 HOH 106 305 305 HOH HOH A . G 5 HOH 107 306 306 HOH HOH A . G 5 HOH 108 307 307 HOH HOH A . G 5 HOH 109 308 308 HOH HOH A . G 5 HOH 110 309 309 HOH HOH A . G 5 HOH 111 310 310 HOH HOH A . G 5 HOH 112 311 311 HOH HOH A . G 5 HOH 113 312 312 HOH HOH A . G 5 HOH 114 313 313 HOH HOH A . G 5 HOH 115 314 314 HOH HOH A . G 5 HOH 116 315 315 HOH HOH A . G 5 HOH 117 316 316 HOH HOH A . G 5 HOH 118 317 317 HOH HOH A . G 5 HOH 119 318 318 HOH HOH A . G 5 HOH 120 319 319 HOH HOH A . G 5 HOH 121 320 320 HOH HOH A . G 5 HOH 122 321 321 HOH HOH A . G 5 HOH 123 322 322 HOH HOH A . G 5 HOH 124 323 323 HOH HOH A . G 5 HOH 125 324 324 HOH HOH A . G 5 HOH 126 325 325 HOH HOH A . G 5 HOH 127 326 326 HOH HOH A . G 5 HOH 128 327 327 HOH HOH A . G 5 HOH 129 328 328 HOH HOH A . G 5 HOH 130 329 329 HOH HOH A . G 5 HOH 131 330 330 HOH HOH A . G 5 HOH 132 331 331 HOH HOH A . G 5 HOH 133 332 332 HOH HOH A . G 5 HOH 134 333 333 HOH HOH A . G 5 HOH 135 334 334 HOH HOH A . G 5 HOH 136 335 335 HOH HOH A . G 5 HOH 137 336 336 HOH HOH A . G 5 HOH 138 337 337 HOH HOH A . G 5 HOH 139 338 338 HOH HOH A . G 5 HOH 140 339 339 HOH HOH A . G 5 HOH 141 340 340 HOH HOH A . G 5 HOH 142 341 341 HOH HOH A . G 5 HOH 143 342 342 HOH HOH A . G 5 HOH 144 343 343 HOH HOH A . G 5 HOH 145 344 344 HOH HOH A . G 5 HOH 146 345 345 HOH HOH A . G 5 HOH 147 346 346 HOH HOH A . G 5 HOH 148 347 347 HOH HOH A . G 5 HOH 149 348 348 HOH HOH A . G 5 HOH 150 349 349 HOH HOH A . G 5 HOH 151 350 350 HOH HOH A . G 5 HOH 152 351 351 HOH HOH A . G 5 HOH 153 352 352 HOH HOH A . G 5 HOH 154 353 353 HOH HOH A . G 5 HOH 155 354 354 HOH HOH A . G 5 HOH 156 355 355 HOH HOH A . G 5 HOH 157 356 356 HOH HOH A . G 5 HOH 158 357 357 HOH HOH A . G 5 HOH 159 358 358 HOH HOH A . G 5 HOH 160 359 359 HOH HOH A . G 5 HOH 161 360 360 HOH HOH A . G 5 HOH 162 361 361 HOH HOH A . G 5 HOH 163 362 362 HOH HOH A . G 5 HOH 164 363 363 HOH HOH A . G 5 HOH 165 364 364 HOH HOH A . G 5 HOH 166 365 365 HOH HOH A . G 5 HOH 167 366 366 HOH HOH A . G 5 HOH 168 367 367 HOH HOH A . G 5 HOH 169 368 368 HOH HOH A . G 5 HOH 170 369 369 HOH HOH A . G 5 HOH 171 370 370 HOH HOH A . G 5 HOH 172 371 371 HOH HOH A . G 5 HOH 173 372 372 HOH HOH A . G 5 HOH 174 373 373 HOH HOH A . G 5 HOH 175 374 374 HOH HOH A . G 5 HOH 176 375 375 HOH HOH A . G 5 HOH 177 376 376 HOH HOH A . G 5 HOH 178 377 377 HOH HOH A . G 5 HOH 179 378 378 HOH HOH A . G 5 HOH 180 379 379 HOH HOH A . G 5 HOH 181 380 380 HOH HOH A . G 5 HOH 182 381 381 HOH HOH A . G 5 HOH 183 382 382 HOH HOH A . G 5 HOH 184 383 383 HOH HOH A . G 5 HOH 185 384 384 HOH HOH A . G 5 HOH 186 385 385 HOH HOH A . G 5 HOH 187 386 386 HOH HOH A . G 5 HOH 188 387 387 HOH HOH A . G 5 HOH 189 388 388 HOH HOH A . G 5 HOH 190 389 389 HOH HOH A . G 5 HOH 191 390 390 HOH HOH A . G 5 HOH 192 391 391 HOH HOH A . G 5 HOH 193 392 392 HOH HOH A . G 5 HOH 194 393 393 HOH HOH A . G 5 HOH 195 394 394 HOH HOH A . G 5 HOH 196 395 395 HOH HOH A . G 5 HOH 197 396 396 HOH HOH A . G 5 HOH 198 397 397 HOH HOH A . G 5 HOH 199 398 398 HOH HOH A . G 5 HOH 200 399 399 HOH HOH A . G 5 HOH 201 400 400 HOH HOH A . G 5 HOH 202 401 401 HOH HOH A . G 5 HOH 203 402 402 HOH HOH A . G 5 HOH 204 403 403 HOH HOH A . G 5 HOH 205 404 404 HOH HOH A . G 5 HOH 206 405 405 HOH HOH A . G 5 HOH 207 406 406 HOH HOH A . G 5 HOH 208 407 407 HOH HOH A . G 5 HOH 209 408 408 HOH HOH A . G 5 HOH 210 409 409 HOH HOH A . G 5 HOH 211 410 410 HOH HOH A . G 5 HOH 212 411 411 HOH HOH A . G 5 HOH 213 412 412 HOH HOH A . G 5 HOH 214 413 413 HOH HOH A . G 5 HOH 215 414 414 HOH HOH A . G 5 HOH 216 415 415 HOH HOH A . G 5 HOH 217 416 416 HOH HOH A . G 5 HOH 218 417 417 HOH HOH A . G 5 HOH 219 418 418 HOH HOH A . G 5 HOH 220 419 419 HOH HOH A . G 5 HOH 221 420 420 HOH HOH A . G 5 HOH 222 421 421 HOH HOH A . G 5 HOH 223 422 422 HOH HOH A . G 5 HOH 224 423 423 HOH HOH A . G 5 HOH 225 424 424 HOH HOH A . G 5 HOH 226 425 425 HOH HOH A . G 5 HOH 227 426 426 HOH HOH A . G 5 HOH 228 427 427 HOH HOH A . G 5 HOH 229 428 428 HOH HOH A . G 5 HOH 230 429 429 HOH HOH A . G 5 HOH 231 430 430 HOH HOH A . G 5 HOH 232 431 431 HOH HOH A . G 5 HOH 233 432 432 HOH HOH A . G 5 HOH 234 433 433 HOH HOH A . G 5 HOH 235 434 434 HOH HOH A . G 5 HOH 236 435 435 HOH HOH A . G 5 HOH 237 436 436 HOH HOH A . G 5 HOH 238 437 437 HOH HOH A . G 5 HOH 239 438 438 HOH HOH A . G 5 HOH 240 439 439 HOH HOH A . G 5 HOH 241 440 440 HOH HOH A . G 5 HOH 242 441 441 HOH HOH A . G 5 HOH 243 442 442 HOH HOH A . G 5 HOH 244 443 443 HOH HOH A . G 5 HOH 245 444 444 HOH HOH A . G 5 HOH 246 445 445 HOH HOH A . G 5 HOH 247 446 446 HOH HOH A . G 5 HOH 248 447 447 HOH HOH A . G 5 HOH 249 448 448 HOH HOH A . G 5 HOH 250 449 449 HOH HOH A . G 5 HOH 251 450 450 HOH HOH A . G 5 HOH 252 451 451 HOH HOH A . G 5 HOH 253 452 452 HOH HOH A . G 5 HOH 254 453 453 HOH HOH A . G 5 HOH 255 454 454 HOH HOH A . G 5 HOH 256 455 455 HOH HOH A . G 5 HOH 257 456 456 HOH HOH A . G 5 HOH 258 457 457 HOH HOH A . G 5 HOH 259 458 458 HOH HOH A . G 5 HOH 260 459 459 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-01-15 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-11-01 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Refinement description' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly_gen 13 4 'Structure model' struct_asym 14 4 'Structure model' struct_conn 15 4 'Structure model' struct_site 16 4 'Structure model' struct_site_gen 17 5 'Structure model' chem_comp 18 5 'Structure model' chem_comp_atom 19 5 'Structure model' chem_comp_bond 20 5 'Structure model' database_2 21 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.name' 15 4 'Structure model' '_chem_comp.type' 16 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 5 'Structure model' '_chem_comp.pdbx_synonyms' 32 5 'Structure model' '_database_2.pdbx_DOI' 33 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3AP9 _pdbx_entry_details.sequence_details 'THIS RESIDUE IS CAUSED BY NATURAL VARIANT.' _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 72 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 54.23 _pdbx_validate_torsion.psi -126.19 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A MET 2 ? A MET 2 3 1 Y 1 A LEU 3 ? A LEU 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BGC C2 C N R 74 BGC C3 C N S 75 BGC C4 C N S 76 BGC C5 C N R 77 BGC C6 C N N 78 BGC C1 C N R 79 BGC O1 O N N 80 BGC O2 O N N 81 BGC O3 O N N 82 BGC O4 O N N 83 BGC O5 O N N 84 BGC O6 O N N 85 BGC H2 H N N 86 BGC H3 H N N 87 BGC H4 H N N 88 BGC H5 H N N 89 BGC H61 H N N 90 BGC H62 H N N 91 BGC H1 H N N 92 BGC HO1 H N N 93 BGC HO2 H N N 94 BGC HO3 H N N 95 BGC HO4 H N N 96 BGC HO6 H N N 97 CL CL CL N N 98 CYS N N N N 99 CYS CA C N R 100 CYS C C N N 101 CYS O O N N 102 CYS CB C N N 103 CYS SG S N N 104 CYS OXT O N N 105 CYS H H N N 106 CYS H2 H N N 107 CYS HA H N N 108 CYS HB2 H N N 109 CYS HB3 H N N 110 CYS HG H N N 111 CYS HXT H N N 112 FUC C1 C N R 113 FUC C2 C N S 114 FUC C3 C N R 115 FUC C4 C N S 116 FUC C5 C N S 117 FUC C6 C N N 118 FUC O1 O N N 119 FUC O2 O N N 120 FUC O3 O N N 121 FUC O4 O N N 122 FUC O5 O N N 123 FUC H1 H N N 124 FUC H2 H N N 125 FUC H3 H N N 126 FUC H4 H N N 127 FUC H5 H N N 128 FUC H61 H N N 129 FUC H62 H N N 130 FUC H63 H N N 131 FUC HO1 H N N 132 FUC HO2 H N N 133 FUC HO3 H N N 134 FUC HO4 H N N 135 GAL C1 C N R 136 GAL C2 C N R 137 GAL C3 C N S 138 GAL C4 C N R 139 GAL C5 C N R 140 GAL C6 C N N 141 GAL O1 O N N 142 GAL O2 O N N 143 GAL O3 O N N 144 GAL O4 O N N 145 GAL O5 O N N 146 GAL O6 O N N 147 GAL H1 H N N 148 GAL H2 H N N 149 GAL H3 H N N 150 GAL H4 H N N 151 GAL H5 H N N 152 GAL H61 H N N 153 GAL H62 H N N 154 GAL HO1 H N N 155 GAL HO2 H N N 156 GAL HO3 H N N 157 GAL HO4 H N N 158 GAL HO6 H N N 159 GLN N N N N 160 GLN CA C N S 161 GLN C C N N 162 GLN O O N N 163 GLN CB C N N 164 GLN CG C N N 165 GLN CD C N N 166 GLN OE1 O N N 167 GLN NE2 N N N 168 GLN OXT O N N 169 GLN H H N N 170 GLN H2 H N N 171 GLN HA H N N 172 GLN HB2 H N N 173 GLN HB3 H N N 174 GLN HG2 H N N 175 GLN HG3 H N N 176 GLN HE21 H N N 177 GLN HE22 H N N 178 GLN HXT H N N 179 GLU N N N N 180 GLU CA C N S 181 GLU C C N N 182 GLU O O N N 183 GLU CB C N N 184 GLU CG C N N 185 GLU CD C N N 186 GLU OE1 O N N 187 GLU OE2 O N N 188 GLU OXT O N N 189 GLU H H N N 190 GLU H2 H N N 191 GLU HA H N N 192 GLU HB2 H N N 193 GLU HB3 H N N 194 GLU HG2 H N N 195 GLU HG3 H N N 196 GLU HE2 H N N 197 GLU HXT H N N 198 GLY N N N N 199 GLY CA C N N 200 GLY C C N N 201 GLY O O N N 202 GLY OXT O N N 203 GLY H H N N 204 GLY H2 H N N 205 GLY HA2 H N N 206 GLY HA3 H N N 207 GLY HXT H N N 208 HIS N N N N 209 HIS CA C N S 210 HIS C C N N 211 HIS O O N N 212 HIS CB C N N 213 HIS CG C Y N 214 HIS ND1 N Y N 215 HIS CD2 C Y N 216 HIS CE1 C Y N 217 HIS NE2 N Y N 218 HIS OXT O N N 219 HIS H H N N 220 HIS H2 H N N 221 HIS HA H N N 222 HIS HB2 H N N 223 HIS HB3 H N N 224 HIS HD1 H N N 225 HIS HD2 H N N 226 HIS HE1 H N N 227 HIS HE2 H N N 228 HIS HXT H N N 229 HOH O O N N 230 HOH H1 H N N 231 HOH H2 H N N 232 ILE N N N N 233 ILE CA C N S 234 ILE C C N N 235 ILE O O N N 236 ILE CB C N S 237 ILE CG1 C N N 238 ILE CG2 C N N 239 ILE CD1 C N N 240 ILE OXT O N N 241 ILE H H N N 242 ILE H2 H N N 243 ILE HA H N N 244 ILE HB H N N 245 ILE HG12 H N N 246 ILE HG13 H N N 247 ILE HG21 H N N 248 ILE HG22 H N N 249 ILE HG23 H N N 250 ILE HD11 H N N 251 ILE HD12 H N N 252 ILE HD13 H N N 253 ILE HXT H N N 254 LEU N N N N 255 LEU CA C N S 256 LEU C C N N 257 LEU O O N N 258 LEU CB C N N 259 LEU CG C N N 260 LEU CD1 C N N 261 LEU CD2 C N N 262 LEU OXT O N N 263 LEU H H N N 264 LEU H2 H N N 265 LEU HA H N N 266 LEU HB2 H N N 267 LEU HB3 H N N 268 LEU HG H N N 269 LEU HD11 H N N 270 LEU HD12 H N N 271 LEU HD13 H N N 272 LEU HD21 H N N 273 LEU HD22 H N N 274 LEU HD23 H N N 275 LEU HXT H N N 276 LYS N N N N 277 LYS CA C N S 278 LYS C C N N 279 LYS O O N N 280 LYS CB C N N 281 LYS CG C N N 282 LYS CD C N N 283 LYS CE C N N 284 LYS NZ N N N 285 LYS OXT O N N 286 LYS H H N N 287 LYS H2 H N N 288 LYS HA H N N 289 LYS HB2 H N N 290 LYS HB3 H N N 291 LYS HG2 H N N 292 LYS HG3 H N N 293 LYS HD2 H N N 294 LYS HD3 H N N 295 LYS HE2 H N N 296 LYS HE3 H N N 297 LYS HZ1 H N N 298 LYS HZ2 H N N 299 LYS HZ3 H N N 300 LYS HXT H N N 301 MET N N N N 302 MET CA C N S 303 MET C C N N 304 MET O O N N 305 MET CB C N N 306 MET CG C N N 307 MET SD S N N 308 MET CE C N N 309 MET OXT O N N 310 MET H H N N 311 MET H2 H N N 312 MET HA H N N 313 MET HB2 H N N 314 MET HB3 H N N 315 MET HG2 H N N 316 MET HG3 H N N 317 MET HE1 H N N 318 MET HE2 H N N 319 MET HE3 H N N 320 MET HXT H N N 321 MPD C1 C N N 322 MPD C2 C N N 323 MPD O2 O N N 324 MPD CM C N N 325 MPD C3 C N N 326 MPD C4 C N S 327 MPD O4 O N N 328 MPD C5 C N N 329 MPD H11 H N N 330 MPD H12 H N N 331 MPD H13 H N N 332 MPD HO2 H N N 333 MPD HM1 H N N 334 MPD HM2 H N N 335 MPD HM3 H N N 336 MPD H31 H N N 337 MPD H32 H N N 338 MPD H4 H N N 339 MPD HO4 H N N 340 MPD H51 H N N 341 MPD H52 H N N 342 MPD H53 H N N 343 NAG C1 C N R 344 NAG C2 C N R 345 NAG C3 C N R 346 NAG C4 C N S 347 NAG C5 C N R 348 NAG C6 C N N 349 NAG C7 C N N 350 NAG C8 C N N 351 NAG N2 N N N 352 NAG O1 O N N 353 NAG O3 O N N 354 NAG O4 O N N 355 NAG O5 O N N 356 NAG O6 O N N 357 NAG O7 O N N 358 NAG H1 H N N 359 NAG H2 H N N 360 NAG H3 H N N 361 NAG H4 H N N 362 NAG H5 H N N 363 NAG H61 H N N 364 NAG H62 H N N 365 NAG H81 H N N 366 NAG H82 H N N 367 NAG H83 H N N 368 NAG HN2 H N N 369 NAG HO1 H N N 370 NAG HO3 H N N 371 NAG HO4 H N N 372 NAG HO6 H N N 373 PHE N N N N 374 PHE CA C N S 375 PHE C C N N 376 PHE O O N N 377 PHE CB C N N 378 PHE CG C Y N 379 PHE CD1 C Y N 380 PHE CD2 C Y N 381 PHE CE1 C Y N 382 PHE CE2 C Y N 383 PHE CZ C Y N 384 PHE OXT O N N 385 PHE H H N N 386 PHE H2 H N N 387 PHE HA H N N 388 PHE HB2 H N N 389 PHE HB3 H N N 390 PHE HD1 H N N 391 PHE HD2 H N N 392 PHE HE1 H N N 393 PHE HE2 H N N 394 PHE HZ H N N 395 PHE HXT H N N 396 PRO N N N N 397 PRO CA C N S 398 PRO C C N N 399 PRO O O N N 400 PRO CB C N N 401 PRO CG C N N 402 PRO CD C N N 403 PRO OXT O N N 404 PRO H H N N 405 PRO HA H N N 406 PRO HB2 H N N 407 PRO HB3 H N N 408 PRO HG2 H N N 409 PRO HG3 H N N 410 PRO HD2 H N N 411 PRO HD3 H N N 412 PRO HXT H N N 413 SER N N N N 414 SER CA C N S 415 SER C C N N 416 SER O O N N 417 SER CB C N N 418 SER OG O N N 419 SER OXT O N N 420 SER H H N N 421 SER H2 H N N 422 SER HA H N N 423 SER HB2 H N N 424 SER HB3 H N N 425 SER HG H N N 426 SER HXT H N N 427 THR N N N N 428 THR CA C N S 429 THR C C N N 430 THR O O N N 431 THR CB C N R 432 THR OG1 O N N 433 THR CG2 C N N 434 THR OXT O N N 435 THR H H N N 436 THR H2 H N N 437 THR HA H N N 438 THR HB H N N 439 THR HG1 H N N 440 THR HG21 H N N 441 THR HG22 H N N 442 THR HG23 H N N 443 THR HXT H N N 444 TRP N N N N 445 TRP CA C N S 446 TRP C C N N 447 TRP O O N N 448 TRP CB C N N 449 TRP CG C Y N 450 TRP CD1 C Y N 451 TRP CD2 C Y N 452 TRP NE1 N Y N 453 TRP CE2 C Y N 454 TRP CE3 C Y N 455 TRP CZ2 C Y N 456 TRP CZ3 C Y N 457 TRP CH2 C Y N 458 TRP OXT O N N 459 TRP H H N N 460 TRP H2 H N N 461 TRP HA H N N 462 TRP HB2 H N N 463 TRP HB3 H N N 464 TRP HD1 H N N 465 TRP HE1 H N N 466 TRP HE3 H N N 467 TRP HZ2 H N N 468 TRP HZ3 H N N 469 TRP HH2 H N N 470 TRP HXT H N N 471 TYR N N N N 472 TYR CA C N S 473 TYR C C N N 474 TYR O O N N 475 TYR CB C N N 476 TYR CG C Y N 477 TYR CD1 C Y N 478 TYR CD2 C Y N 479 TYR CE1 C Y N 480 TYR CE2 C Y N 481 TYR CZ C Y N 482 TYR OH O N N 483 TYR OXT O N N 484 TYR H H N N 485 TYR H2 H N N 486 TYR HA H N N 487 TYR HB2 H N N 488 TYR HB3 H N N 489 TYR HD1 H N N 490 TYR HD2 H N N 491 TYR HE1 H N N 492 TYR HE2 H N N 493 TYR HH H N N 494 TYR HXT H N N 495 VAL N N N N 496 VAL CA C N S 497 VAL C C N N 498 VAL O O N N 499 VAL CB C N N 500 VAL CG1 C N N 501 VAL CG2 C N N 502 VAL OXT O N N 503 VAL H H N N 504 VAL H2 H N N 505 VAL HA H N N 506 VAL HB H N N 507 VAL HG11 H N N 508 VAL HG12 H N N 509 VAL HG13 H N N 510 VAL HG21 H N N 511 VAL HG22 H N N 512 VAL HG23 H N N 513 VAL HXT H N N 514 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BGC C2 C3 sing N N 70 BGC C2 C1 sing N N 71 BGC C2 O2 sing N N 72 BGC C2 H2 sing N N 73 BGC C3 C4 sing N N 74 BGC C3 O3 sing N N 75 BGC C3 H3 sing N N 76 BGC C4 C5 sing N N 77 BGC C4 O4 sing N N 78 BGC C4 H4 sing N N 79 BGC C5 C6 sing N N 80 BGC C5 O5 sing N N 81 BGC C5 H5 sing N N 82 BGC C6 O6 sing N N 83 BGC C6 H61 sing N N 84 BGC C6 H62 sing N N 85 BGC C1 O1 sing N N 86 BGC C1 O5 sing N N 87 BGC C1 H1 sing N N 88 BGC O1 HO1 sing N N 89 BGC O2 HO2 sing N N 90 BGC O3 HO3 sing N N 91 BGC O4 HO4 sing N N 92 BGC O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 FUC C1 C2 sing N N 107 FUC C1 O1 sing N N 108 FUC C1 O5 sing N N 109 FUC C1 H1 sing N N 110 FUC C2 C3 sing N N 111 FUC C2 O2 sing N N 112 FUC C2 H2 sing N N 113 FUC C3 C4 sing N N 114 FUC C3 O3 sing N N 115 FUC C3 H3 sing N N 116 FUC C4 C5 sing N N 117 FUC C4 O4 sing N N 118 FUC C4 H4 sing N N 119 FUC C5 C6 sing N N 120 FUC C5 O5 sing N N 121 FUC C5 H5 sing N N 122 FUC C6 H61 sing N N 123 FUC C6 H62 sing N N 124 FUC C6 H63 sing N N 125 FUC O1 HO1 sing N N 126 FUC O2 HO2 sing N N 127 FUC O3 HO3 sing N N 128 FUC O4 HO4 sing N N 129 GAL C1 C2 sing N N 130 GAL C1 O1 sing N N 131 GAL C1 O5 sing N N 132 GAL C1 H1 sing N N 133 GAL C2 C3 sing N N 134 GAL C2 O2 sing N N 135 GAL C2 H2 sing N N 136 GAL C3 C4 sing N N 137 GAL C3 O3 sing N N 138 GAL C3 H3 sing N N 139 GAL C4 C5 sing N N 140 GAL C4 O4 sing N N 141 GAL C4 H4 sing N N 142 GAL C5 C6 sing N N 143 GAL C5 O5 sing N N 144 GAL C5 H5 sing N N 145 GAL C6 O6 sing N N 146 GAL C6 H61 sing N N 147 GAL C6 H62 sing N N 148 GAL O1 HO1 sing N N 149 GAL O2 HO2 sing N N 150 GAL O3 HO3 sing N N 151 GAL O4 HO4 sing N N 152 GAL O6 HO6 sing N N 153 GLN N CA sing N N 154 GLN N H sing N N 155 GLN N H2 sing N N 156 GLN CA C sing N N 157 GLN CA CB sing N N 158 GLN CA HA sing N N 159 GLN C O doub N N 160 GLN C OXT sing N N 161 GLN CB CG sing N N 162 GLN CB HB2 sing N N 163 GLN CB HB3 sing N N 164 GLN CG CD sing N N 165 GLN CG HG2 sing N N 166 GLN CG HG3 sing N N 167 GLN CD OE1 doub N N 168 GLN CD NE2 sing N N 169 GLN NE2 HE21 sing N N 170 GLN NE2 HE22 sing N N 171 GLN OXT HXT sing N N 172 GLU N CA sing N N 173 GLU N H sing N N 174 GLU N H2 sing N N 175 GLU CA C sing N N 176 GLU CA CB sing N N 177 GLU CA HA sing N N 178 GLU C O doub N N 179 GLU C OXT sing N N 180 GLU CB CG sing N N 181 GLU CB HB2 sing N N 182 GLU CB HB3 sing N N 183 GLU CG CD sing N N 184 GLU CG HG2 sing N N 185 GLU CG HG3 sing N N 186 GLU CD OE1 doub N N 187 GLU CD OE2 sing N N 188 GLU OE2 HE2 sing N N 189 GLU OXT HXT sing N N 190 GLY N CA sing N N 191 GLY N H sing N N 192 GLY N H2 sing N N 193 GLY CA C sing N N 194 GLY CA HA2 sing N N 195 GLY CA HA3 sing N N 196 GLY C O doub N N 197 GLY C OXT sing N N 198 GLY OXT HXT sing N N 199 HIS N CA sing N N 200 HIS N H sing N N 201 HIS N H2 sing N N 202 HIS CA C sing N N 203 HIS CA CB sing N N 204 HIS CA HA sing N N 205 HIS C O doub N N 206 HIS C OXT sing N N 207 HIS CB CG sing N N 208 HIS CB HB2 sing N N 209 HIS CB HB3 sing N N 210 HIS CG ND1 sing Y N 211 HIS CG CD2 doub Y N 212 HIS ND1 CE1 doub Y N 213 HIS ND1 HD1 sing N N 214 HIS CD2 NE2 sing Y N 215 HIS CD2 HD2 sing N N 216 HIS CE1 NE2 sing Y N 217 HIS CE1 HE1 sing N N 218 HIS NE2 HE2 sing N N 219 HIS OXT HXT sing N N 220 HOH O H1 sing N N 221 HOH O H2 sing N N 222 ILE N CA sing N N 223 ILE N H sing N N 224 ILE N H2 sing N N 225 ILE CA C sing N N 226 ILE CA CB sing N N 227 ILE CA HA sing N N 228 ILE C O doub N N 229 ILE C OXT sing N N 230 ILE CB CG1 sing N N 231 ILE CB CG2 sing N N 232 ILE CB HB sing N N 233 ILE CG1 CD1 sing N N 234 ILE CG1 HG12 sing N N 235 ILE CG1 HG13 sing N N 236 ILE CG2 HG21 sing N N 237 ILE CG2 HG22 sing N N 238 ILE CG2 HG23 sing N N 239 ILE CD1 HD11 sing N N 240 ILE CD1 HD12 sing N N 241 ILE CD1 HD13 sing N N 242 ILE OXT HXT sing N N 243 LEU N CA sing N N 244 LEU N H sing N N 245 LEU N H2 sing N N 246 LEU CA C sing N N 247 LEU CA CB sing N N 248 LEU CA HA sing N N 249 LEU C O doub N N 250 LEU C OXT sing N N 251 LEU CB CG sing N N 252 LEU CB HB2 sing N N 253 LEU CB HB3 sing N N 254 LEU CG CD1 sing N N 255 LEU CG CD2 sing N N 256 LEU CG HG sing N N 257 LEU CD1 HD11 sing N N 258 LEU CD1 HD12 sing N N 259 LEU CD1 HD13 sing N N 260 LEU CD2 HD21 sing N N 261 LEU CD2 HD22 sing N N 262 LEU CD2 HD23 sing N N 263 LEU OXT HXT sing N N 264 LYS N CA sing N N 265 LYS N H sing N N 266 LYS N H2 sing N N 267 LYS CA C sing N N 268 LYS CA CB sing N N 269 LYS CA HA sing N N 270 LYS C O doub N N 271 LYS C OXT sing N N 272 LYS CB CG sing N N 273 LYS CB HB2 sing N N 274 LYS CB HB3 sing N N 275 LYS CG CD sing N N 276 LYS CG HG2 sing N N 277 LYS CG HG3 sing N N 278 LYS CD CE sing N N 279 LYS CD HD2 sing N N 280 LYS CD HD3 sing N N 281 LYS CE NZ sing N N 282 LYS CE HE2 sing N N 283 LYS CE HE3 sing N N 284 LYS NZ HZ1 sing N N 285 LYS NZ HZ2 sing N N 286 LYS NZ HZ3 sing N N 287 LYS OXT HXT sing N N 288 MET N CA sing N N 289 MET N H sing N N 290 MET N H2 sing N N 291 MET CA C sing N N 292 MET CA CB sing N N 293 MET CA HA sing N N 294 MET C O doub N N 295 MET C OXT sing N N 296 MET CB CG sing N N 297 MET CB HB2 sing N N 298 MET CB HB3 sing N N 299 MET CG SD sing N N 300 MET CG HG2 sing N N 301 MET CG HG3 sing N N 302 MET SD CE sing N N 303 MET CE HE1 sing N N 304 MET CE HE2 sing N N 305 MET CE HE3 sing N N 306 MET OXT HXT sing N N 307 MPD C1 C2 sing N N 308 MPD C1 H11 sing N N 309 MPD C1 H12 sing N N 310 MPD C1 H13 sing N N 311 MPD C2 O2 sing N N 312 MPD C2 CM sing N N 313 MPD C2 C3 sing N N 314 MPD O2 HO2 sing N N 315 MPD CM HM1 sing N N 316 MPD CM HM2 sing N N 317 MPD CM HM3 sing N N 318 MPD C3 C4 sing N N 319 MPD C3 H31 sing N N 320 MPD C3 H32 sing N N 321 MPD C4 O4 sing N N 322 MPD C4 C5 sing N N 323 MPD C4 H4 sing N N 324 MPD O4 HO4 sing N N 325 MPD C5 H51 sing N N 326 MPD C5 H52 sing N N 327 MPD C5 H53 sing N N 328 NAG C1 C2 sing N N 329 NAG C1 O1 sing N N 330 NAG C1 O5 sing N N 331 NAG C1 H1 sing N N 332 NAG C2 C3 sing N N 333 NAG C2 N2 sing N N 334 NAG C2 H2 sing N N 335 NAG C3 C4 sing N N 336 NAG C3 O3 sing N N 337 NAG C3 H3 sing N N 338 NAG C4 C5 sing N N 339 NAG C4 O4 sing N N 340 NAG C4 H4 sing N N 341 NAG C5 C6 sing N N 342 NAG C5 O5 sing N N 343 NAG C5 H5 sing N N 344 NAG C6 O6 sing N N 345 NAG C6 H61 sing N N 346 NAG C6 H62 sing N N 347 NAG C7 C8 sing N N 348 NAG C7 N2 sing N N 349 NAG C7 O7 doub N N 350 NAG C8 H81 sing N N 351 NAG C8 H82 sing N N 352 NAG C8 H83 sing N N 353 NAG N2 HN2 sing N N 354 NAG O1 HO1 sing N N 355 NAG O3 HO3 sing N N 356 NAG O4 HO4 sing N N 357 NAG O6 HO6 sing N N 358 PHE N CA sing N N 359 PHE N H sing N N 360 PHE N H2 sing N N 361 PHE CA C sing N N 362 PHE CA CB sing N N 363 PHE CA HA sing N N 364 PHE C O doub N N 365 PHE C OXT sing N N 366 PHE CB CG sing N N 367 PHE CB HB2 sing N N 368 PHE CB HB3 sing N N 369 PHE CG CD1 doub Y N 370 PHE CG CD2 sing Y N 371 PHE CD1 CE1 sing Y N 372 PHE CD1 HD1 sing N N 373 PHE CD2 CE2 doub Y N 374 PHE CD2 HD2 sing N N 375 PHE CE1 CZ doub Y N 376 PHE CE1 HE1 sing N N 377 PHE CE2 CZ sing Y N 378 PHE CE2 HE2 sing N N 379 PHE CZ HZ sing N N 380 PHE OXT HXT sing N N 381 PRO N CA sing N N 382 PRO N CD sing N N 383 PRO N H sing N N 384 PRO CA C sing N N 385 PRO CA CB sing N N 386 PRO CA HA sing N N 387 PRO C O doub N N 388 PRO C OXT sing N N 389 PRO CB CG sing N N 390 PRO CB HB2 sing N N 391 PRO CB HB3 sing N N 392 PRO CG CD sing N N 393 PRO CG HG2 sing N N 394 PRO CG HG3 sing N N 395 PRO CD HD2 sing N N 396 PRO CD HD3 sing N N 397 PRO OXT HXT sing N N 398 SER N CA sing N N 399 SER N H sing N N 400 SER N H2 sing N N 401 SER CA C sing N N 402 SER CA CB sing N N 403 SER CA HA sing N N 404 SER C O doub N N 405 SER C OXT sing N N 406 SER CB OG sing N N 407 SER CB HB2 sing N N 408 SER CB HB3 sing N N 409 SER OG HG sing N N 410 SER OXT HXT sing N N 411 THR N CA sing N N 412 THR N H sing N N 413 THR N H2 sing N N 414 THR CA C sing N N 415 THR CA CB sing N N 416 THR CA HA sing N N 417 THR C O doub N N 418 THR C OXT sing N N 419 THR CB OG1 sing N N 420 THR CB CG2 sing N N 421 THR CB HB sing N N 422 THR OG1 HG1 sing N N 423 THR CG2 HG21 sing N N 424 THR CG2 HG22 sing N N 425 THR CG2 HG23 sing N N 426 THR OXT HXT sing N N 427 TRP N CA sing N N 428 TRP N H sing N N 429 TRP N H2 sing N N 430 TRP CA C sing N N 431 TRP CA CB sing N N 432 TRP CA HA sing N N 433 TRP C O doub N N 434 TRP C OXT sing N N 435 TRP CB CG sing N N 436 TRP CB HB2 sing N N 437 TRP CB HB3 sing N N 438 TRP CG CD1 doub Y N 439 TRP CG CD2 sing Y N 440 TRP CD1 NE1 sing Y N 441 TRP CD1 HD1 sing N N 442 TRP CD2 CE2 doub Y N 443 TRP CD2 CE3 sing Y N 444 TRP NE1 CE2 sing Y N 445 TRP NE1 HE1 sing N N 446 TRP CE2 CZ2 sing Y N 447 TRP CE3 CZ3 doub Y N 448 TRP CE3 HE3 sing N N 449 TRP CZ2 CH2 doub Y N 450 TRP CZ2 HZ2 sing N N 451 TRP CZ3 CH2 sing Y N 452 TRP CZ3 HZ3 sing N N 453 TRP CH2 HH2 sing N N 454 TRP OXT HXT sing N N 455 TYR N CA sing N N 456 TYR N H sing N N 457 TYR N H2 sing N N 458 TYR CA C sing N N 459 TYR CA CB sing N N 460 TYR CA HA sing N N 461 TYR C O doub N N 462 TYR C OXT sing N N 463 TYR CB CG sing N N 464 TYR CB HB2 sing N N 465 TYR CB HB3 sing N N 466 TYR CG CD1 doub Y N 467 TYR CG CD2 sing Y N 468 TYR CD1 CE1 sing Y N 469 TYR CD1 HD1 sing N N 470 TYR CD2 CE2 doub Y N 471 TYR CD2 HD2 sing N N 472 TYR CE1 CZ doub Y N 473 TYR CE1 HE1 sing N N 474 TYR CE2 CZ sing Y N 475 TYR CE2 HE2 sing N N 476 TYR CZ OH sing N N 477 TYR OH HH sing N N 478 TYR OXT HXT sing N N 479 VAL N CA sing N N 480 VAL N H sing N N 481 VAL N H2 sing N N 482 VAL CA C sing N N 483 VAL CA CB sing N N 484 VAL CA HA sing N N 485 VAL C O doub N N 486 VAL C OXT sing N N 487 VAL CB CG1 sing N N 488 VAL CB CG2 sing N N 489 VAL CB HB sing N N 490 VAL CG1 HG11 sing N N 491 VAL CG1 HG12 sing N N 492 VAL CG1 HG13 sing N N 493 VAL CG2 HG21 sing N N 494 VAL CG2 HG22 sing N N 495 VAL CG2 HG23 sing N N 496 VAL OXT HXT sing N N 497 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 BGC 1 B BGC 1 A BGC 159 n B 2 GAL 2 B GAL 2 A GAL 158 n B 2 NAG 3 B NAG 3 A NAG 157 n B 2 FUC 4 B FUC 4 A FUC 156 n B 2 GAL 5 B GAL 5 A GAL 155 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'LFucpa1-3[DGalpb1-4]DGlcpNAcb1-3DGalpb1-4DGlcpb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/4,5,4/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2/a4-b1_b3-c1_c3-d1_c4-e1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Glcp]{[(4+1)][b-D-Galp]{[(3+1)][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-Galp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 BGC O4 HO4 sing ? 2 2 3 NAG C1 O1 2 GAL O3 HO3 sing ? 3 2 4 FUC C1 O1 3 NAG O3 HO3 sing ? 4 2 5 GAL C1 O1 3 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BGC 1 n 2 GAL 2 n 2 NAG 3 n 2 FUC 4 n 2 GAL 5 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3AP5 _pdbx_initial_refinement_model.details 'PDB ENTRY 3AP5' #