HEADER OXIDOREDUCTASE 20-OCT-10 3APQ TITLE CRYSTAL STRUCTURE OF J-TRX1 FRAGMENT OF ERDJ5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY C MEMBER 10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: J-TRX1 DOMAIN (UNP RESIDUES 34-242); COMPND 5 SYNONYM: ER-RESIDENT PROTEIN ERDJ5, ENDOPLASMIC RETICULUM DNAJ-PDI COMPND 6 FUSION PROTEIN 1, J DOMAIN-CONTAINING PROTEIN DISULFIDE ISOMERASE- COMPND 7 LIKE PROTEIN, J DOMAIN-CONTAINING PDI-LIKE PROTEIN, JPDI; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DNAJC10, ERDJ5, JPDI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-5X KEYWDS THIOREDOXIN FOLD, DNAJ DOMAIN, ENDOPLASMIC RETICULUM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.INABA,M.SUZUKI,K.NAGATA REVDAT 1 20-APR-11 3APQ 0 JRNL AUTH M.HAGIWARA,K.MAEGAWA,M.SUZUKI,R.USHIODA,K.ARAKI,Y.MATSUMOTO, JRNL AUTH 2 J.HOSEKI,K.NAGATA,K.INABA JRNL TITL STRUCTURAL BASIS OF AN ERAD PATHWAY MEDIATED BY THE JRNL TITL 2 ER-RESIDENT PROTEIN DISULFIDE REDUCTASE ERDJ5. JRNL REF MOL.CELL V. 41 432 2011 JRNL REFN ISSN 1097-2765 JRNL PMID 21329881 JRNL DOI 10.1016/J.MOLCEL.2011.01.021 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0085 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 32251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1724 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2244 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3317 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.59000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3465 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4679 ; 1.704 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.665 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;34.127 ;23.388 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 609 ;15.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.457 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2705 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2059 ; 0.984 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3297 ; 1.739 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1406 ; 3.058 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1373 ; 4.709 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5900 6.6380 9.7070 REMARK 3 T TENSOR REMARK 3 T11: 0.0352 T22: 0.0529 REMARK 3 T33: 0.0575 T12: -0.0222 REMARK 3 T13: 0.0005 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.9409 L22: 1.9296 REMARK 3 L33: 0.6518 L12: -0.7243 REMARK 3 L13: -0.5482 L23: 0.4458 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: -0.0158 S13: -0.0129 REMARK 3 S21: -0.1677 S22: -0.0557 S23: -0.0875 REMARK 3 S31: -0.1048 S32: 0.0801 S33: 0.0013 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7670 -0.7070 4.8340 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.0419 REMARK 3 T33: 0.0202 T12: -0.0225 REMARK 3 T13: -0.0012 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.4663 L22: 1.8976 REMARK 3 L33: 1.2074 L12: 0.0284 REMARK 3 L13: -0.1043 L23: -0.8067 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: 0.0152 S13: -0.0388 REMARK 3 S21: -0.2045 S22: 0.0937 S23: 0.0612 REMARK 3 S31: 0.0908 S32: -0.1562 S33: -0.0903 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8510 -8.2220 31.2250 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: 0.0202 REMARK 3 T33: 0.0411 T12: 0.0163 REMARK 3 T13: 0.0269 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.3046 L22: 2.0162 REMARK 3 L33: 2.5977 L12: -0.0359 REMARK 3 L13: -0.2241 L23: -0.1323 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: 0.0455 S13: -0.0682 REMARK 3 S21: 0.1015 S22: 0.0806 S23: 0.1496 REMARK 3 S31: 0.0016 S32: -0.1225 S33: -0.0834 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 121 B 235 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9110 -15.3210 27.7110 REMARK 3 T TENSOR REMARK 3 T11: 0.0178 T22: 0.0702 REMARK 3 T33: 0.1455 T12: 0.0220 REMARK 3 T13: 0.0255 T23: 0.0912 REMARK 3 L TENSOR REMARK 3 L11: 2.4678 L22: 1.5791 REMARK 3 L33: 2.7852 L12: 0.8930 REMARK 3 L13: -1.2520 L23: -1.0809 REMARK 3 S TENSOR REMARK 3 S11: -0.1612 S12: -0.2470 S13: -0.3078 REMARK 3 S21: 0.0012 S22: -0.2157 S23: -0.3116 REMARK 3 S31: 0.1254 S32: 0.3679 S33: 0.3768 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3APQ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-10. REMARK 100 THE RCSB ID CODE IS RCSB029542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : DIP6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33995 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 39.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX C/D/E REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 4000, 6.5% ISOPROPANOL, 65MM REMARK 280 HEPES PH7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.58950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 241 REMARK 465 THR A 242 REMARK 465 GLU B 105 REMARK 465 ASP B 106 REMARK 465 THR B 236 REMARK 465 VAL B 237 REMARK 465 THR B 238 REMARK 465 GLU B 239 REMARK 465 LEU B 240 REMARK 465 SER B 241 REMARK 465 THR B 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 324 O HOH B 390 2.05 REMARK 500 O HOH B 328 O HOH B 329 2.08 REMARK 500 O HOH B 370 O HOH B 425 2.10 REMARK 500 O HOH B 259 O HOH B 400 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 43 CB SER A 43 OG -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 193 CA - CB - SG ANGL. DEV. = -11.1 DEGREES REMARK 500 CYS B 158 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 189 85.82 -150.16 REMARK 500 SER A 209 132.26 -34.44 REMARK 500 THR A 236 -127.51 -91.95 REMARK 500 GLN B 111 45.63 -93.08 REMARK 500 ASP B 189 79.26 -157.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 397 DISTANCE = 5.32 ANGSTROMS REMARK 525 HOH B 394 DISTANCE = 5.33 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3APO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-LENGTH ERDJ5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DEPOSITORS STATES THAT THIS PROTEIN ACTUALLY CONTAINS ASP91 IN REMARK 999 THE NATIVE SEQUENCE. THE FEATURE OF UNIPROT (Q9DC23, DJC10_MOUSE) REMARK 999 SHOWS "CONFLICT" AT THIS POSITION: H -> D (in Ref. 1; AAN73273, 2; REMARK 999 AAQ14555 and 4; AAH33461) AS THE EXPERIMENTAL INFO DBREF 3APQ A 34 242 UNP Q9DC23 DJC10_MOUSE 34 242 DBREF 3APQ B 34 242 UNP Q9DC23 DJC10_MOUSE 34 242 SEQADV 3APQ ILE A 33 UNP Q9DC23 EXPRESSION TAG SEQADV 3APQ ASP A 91 UNP Q9DC23 HIS 91 SEE REMARK 999 SEQADV 3APQ ILE B 33 UNP Q9DC23 EXPRESSION TAG SEQADV 3APQ ASP B 91 UNP Q9DC23 HIS 91 SEE REMARK 999 SEQRES 1 A 210 ILE GLN ASN PHE TYR SER LEU LEU GLY VAL SER LYS THR SEQRES 2 A 210 ALA SER SER ARG GLU ILE ARG GLN ALA PHE LYS LYS LEU SEQRES 3 A 210 ALA LEU LYS LEU HIS PRO ASP LYS ASN PRO ASN ASN PRO SEQRES 4 A 210 ASN ALA HIS GLY ASP PHE LEU LYS ILE ASN ARG ALA TYR SEQRES 5 A 210 GLU VAL LEU LYS ASP GLU ASP LEU ARG LYS LYS TYR ASP SEQRES 6 A 210 LYS TYR GLY GLU LYS GLY LEU GLU ASP ASN GLN GLY GLY SEQRES 7 A 210 GLN TYR GLU SER TRP SER TYR TYR ARG TYR ASP PHE GLY SEQRES 8 A 210 ILE TYR ASP ASP ASP PRO GLU ILE ILE THR LEU GLU ARG SEQRES 9 A 210 ARG GLU PHE ASP ALA ALA VAL ASN SER GLY GLU LEU TRP SEQRES 10 A 210 PHE VAL ASN PHE TYR SER PRO GLY CYS SER HIS CYS HIS SEQRES 11 A 210 ASP LEU ALA PRO THR TRP ARG GLU PHE ALA LYS GLU VAL SEQRES 12 A 210 ASP GLY LEU LEU ARG ILE GLY ALA VAL ASN CYS GLY ASP SEQRES 13 A 210 ASP ARG MET LEU CYS ARG MET LYS GLY VAL ASN SER TYR SEQRES 14 A 210 PRO SER LEU PHE ILE PHE ARG SER GLY MET ALA ALA VAL SEQRES 15 A 210 LYS TYR ASN GLY ASP ARG SER LYS GLU SER LEU VAL ALA SEQRES 16 A 210 PHE ALA MET GLN HIS VAL ARG SER THR VAL THR GLU LEU SEQRES 17 A 210 SER THR SEQRES 1 B 210 ILE GLN ASN PHE TYR SER LEU LEU GLY VAL SER LYS THR SEQRES 2 B 210 ALA SER SER ARG GLU ILE ARG GLN ALA PHE LYS LYS LEU SEQRES 3 B 210 ALA LEU LYS LEU HIS PRO ASP LYS ASN PRO ASN ASN PRO SEQRES 4 B 210 ASN ALA HIS GLY ASP PHE LEU LYS ILE ASN ARG ALA TYR SEQRES 5 B 210 GLU VAL LEU LYS ASP GLU ASP LEU ARG LYS LYS TYR ASP SEQRES 6 B 210 LYS TYR GLY GLU LYS GLY LEU GLU ASP ASN GLN GLY GLY SEQRES 7 B 210 GLN TYR GLU SER TRP SER TYR TYR ARG TYR ASP PHE GLY SEQRES 8 B 210 ILE TYR ASP ASP ASP PRO GLU ILE ILE THR LEU GLU ARG SEQRES 9 B 210 ARG GLU PHE ASP ALA ALA VAL ASN SER GLY GLU LEU TRP SEQRES 10 B 210 PHE VAL ASN PHE TYR SER PRO GLY CYS SER HIS CYS HIS SEQRES 11 B 210 ASP LEU ALA PRO THR TRP ARG GLU PHE ALA LYS GLU VAL SEQRES 12 B 210 ASP GLY LEU LEU ARG ILE GLY ALA VAL ASN CYS GLY ASP SEQRES 13 B 210 ASP ARG MET LEU CYS ARG MET LYS GLY VAL ASN SER TYR SEQRES 14 B 210 PRO SER LEU PHE ILE PHE ARG SER GLY MET ALA ALA VAL SEQRES 15 B 210 LYS TYR ASN GLY ASP ARG SER LYS GLU SER LEU VAL ALA SEQRES 16 B 210 PHE ALA MET GLN HIS VAL ARG SER THR VAL THR GLU LEU SEQRES 17 B 210 SER THR FORMUL 3 HOH *406(H2 O) HELIX 1 1 ASN A 35 GLY A 41 1 7 HELIX 2 2 SER A 47 HIS A 63 1 17 HELIX 3 3 PRO A 64 ASN A 67 5 4 HELIX 4 4 ASN A 72 LYS A 88 1 17 HELIX 5 5 ASP A 89 GLY A 100 1 12 HELIX 6 6 SER A 114 ASP A 121 1 8 HELIX 7 7 GLU A 135 GLY A 146 1 12 HELIX 8 8 CYS A 158 VAL A 175 1 18 HELIX 9 9 ASP A 189 LYS A 196 1 8 HELIX 10 10 SER A 221 SER A 235 1 15 HELIX 11 11 ASN B 35 GLY B 41 1 7 HELIX 12 12 SER B 47 HIS B 63 1 17 HELIX 13 13 PRO B 64 ASN B 67 5 4 HELIX 14 14 ASN B 72 LYS B 88 1 17 HELIX 15 15 ASP B 89 GLY B 100 1 12 HELIX 16 16 SER B 114 ASP B 121 1 8 HELIX 17 17 GLU B 135 ASN B 144 1 10 HELIX 18 18 CYS B 158 VAL B 175 1 18 HELIX 19 19 ASP B 189 LYS B 196 1 8 HELIX 20 20 SER B 221 SER B 235 1 15 SHEET 1 A 5 ILE A 132 THR A 133 0 SHEET 2 A 5 ARG A 180 ASN A 185 1 O ILE A 181 N ILE A 132 SHEET 3 A 5 TRP A 149 TYR A 154 1 N PHE A 150 O GLY A 182 SHEET 4 A 5 SER A 203 PHE A 207 -1 O PHE A 207 N TRP A 149 SHEET 5 A 5 VAL A 214 LYS A 215 -1 O VAL A 214 N ILE A 206 SHEET 1 B 5 ILE B 132 THR B 133 0 SHEET 2 B 5 ARG B 180 ASN B 185 1 O ILE B 181 N ILE B 132 SHEET 3 B 5 TRP B 149 TYR B 154 1 N PHE B 150 O ARG B 180 SHEET 4 B 5 SER B 203 PHE B 207 -1 O PHE B 205 N VAL B 151 SHEET 5 B 5 VAL B 214 LYS B 215 -1 O VAL B 214 N ILE B 206 SSBOND 1 CYS A 158 CYS A 161 1555 1555 2.25 SSBOND 2 CYS A 186 CYS A 193 1555 1555 2.02 SSBOND 3 CYS B 158 CYS B 161 1555 1555 2.16 SSBOND 4 CYS B 186 CYS B 193 1555 1555 2.05 CISPEP 1 TYR A 201 PRO A 202 0 -7.87 CISPEP 2 TYR B 201 PRO B 202 0 -9.98 CRYST1 54.008 61.179 62.912 90.00 106.34 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018516 0.000000 0.005428 0.00000 SCALE2 0.000000 0.016345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016564 0.00000