HEADER TRANSPORT PROTEIN 21-OCT-10 3APV TITLE CRYSTAL STRUCTURE OF THE A VARIANT OF HUMAN ALPHA1-ACID GLYCOPROTEIN TITLE 2 AND AMITRIPTYLINE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1-ACID GLYCOPROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AGP 2, OROSOMUCOID-2, OMD 2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGP2, ORM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3C KEYWDS BETA BARREL, PLASMA PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.NISHI,T.ONO,T.NAKAMURA,N.FUKUNAGA,M.IZUMI,H.WATANABE,A.SUENAGA, AUTHOR 2 T.MARUYAMA,Y.YAMAGATA,S.CURRY,M.OTAGIRI REVDAT 4 20-NOV-24 3APV 1 REMARK REVDAT 3 01-NOV-23 3APV 1 REMARK SEQADV REVDAT 2 07-NOV-18 3APV 1 JRNL REVDAT 1 23-FEB-11 3APV 0 JRNL AUTH K.NISHI,T.ONO,T.NAKAMURA,N.FUKUNAGA,M.IZUMI,H.WATANABE, JRNL AUTH 2 A.SUENAGA,T.MARUYAMA,Y.YAMAGATA,S.CURRY,M.OTAGIRI JRNL TITL STRUCTURAL INSIGHTS INTO DIFFERENCES IN DRUG-BINDING JRNL TITL 2 SELECTIVITY BETWEEN TWO FORMS OF HUMAN ALPHA1-ACID JRNL TITL 3 GLYCOPROTEIN GENETIC VARIANTS, THE A AND F1*S FORMS. JRNL REF J. BIOL. CHEM. V. 286 14427 2011 JRNL REFN ESSN 1083-351X JRNL PMID 21349832 JRNL DOI 10.1074/JBC.M110.208926 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0099 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 18955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1314 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2869 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.318 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.234 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.217 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.509 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2998 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4058 ; 1.445 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 341 ; 6.836 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;39.816 ;24.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;17.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.188 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 415 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2344 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1715 ; 0.582 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2778 ; 1.086 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1283 ; 1.635 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1280 ; 2.682 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7730 -0.3270 14.1510 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.1163 REMARK 3 T33: 0.4831 T12: 0.0433 REMARK 3 T13: 0.0895 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.3834 L22: 1.5046 REMARK 3 L33: 9.1306 L12: -0.1032 REMARK 3 L13: 0.6006 L23: 0.8995 REMARK 3 S TENSOR REMARK 3 S11: -0.1102 S12: -0.1613 S13: 0.0054 REMARK 3 S21: -0.0711 S22: -0.2260 S23: -0.0618 REMARK 3 S31: 0.4398 S32: -0.3814 S33: 0.3362 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 175 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2010 3.1260 45.8170 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.3170 REMARK 3 T33: 0.2428 T12: -0.0672 REMARK 3 T13: 0.1021 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 2.8086 L22: 4.0078 REMARK 3 L33: 8.3797 L12: 1.3429 REMARK 3 L13: 1.8635 L23: 1.3664 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: -0.5546 S13: 0.1063 REMARK 3 S21: 0.1709 S22: -0.2833 S23: -0.0419 REMARK 3 S31: -0.0732 S32: -0.9620 S33: 0.2109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3APV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000029546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20082 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.52400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3APU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.32500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.97400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.32500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.97400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLN A 1 REMARK 465 ILE A 2 REMARK 465 GLU A 173 REMARK 465 LYS A 174 REMARK 465 GLU A 175 REMARK 465 ARG A 176 REMARK 465 LYS A 177 REMARK 465 GLN A 178 REMARK 465 GLU A 179 REMARK 465 GLU A 180 REMARK 465 GLY A 181 REMARK 465 GLU A 182 REMARK 465 SER A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 MET B 0 REMARK 465 GLN B 1 REMARK 465 ILE B 2 REMARK 465 ARG B 176 REMARK 465 LYS B 177 REMARK 465 GLN B 178 REMARK 465 GLU B 179 REMARK 465 GLU B 180 REMARK 465 GLY B 181 REMARK 465 GLU B 182 REMARK 465 SER B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 69 47.84 30.12 REMARK 500 LEU B 4 -29.12 -141.10 REMARK 500 GLN B 69 52.15 36.65 REMARK 500 LYS B 135 -36.88 -39.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TP0 A 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TP0 B 190 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3APU RELATED DB: PDB REMARK 900 RELATED ID: 3APW RELATED DB: PDB REMARK 900 RELATED ID: 3APX RELATED DB: PDB DBREF 3APV A 1 183 UNP P19652 A1AG2_HUMAN 19 201 DBREF 3APV B 1 183 UNP P19652 A1AG2_HUMAN 19 201 SEQADV 3APV MET A 0 UNP P19652 EXPRESSION TAG SEQADV 3APV ARG A 149 UNP P19652 CYS 167 ENGINEERED MUTATION SEQADV 3APV HIS A 184 UNP P19652 EXPRESSION TAG SEQADV 3APV HIS A 185 UNP P19652 EXPRESSION TAG SEQADV 3APV HIS A 186 UNP P19652 EXPRESSION TAG SEQADV 3APV HIS A 187 UNP P19652 EXPRESSION TAG SEQADV 3APV HIS A 188 UNP P19652 EXPRESSION TAG SEQADV 3APV HIS A 189 UNP P19652 EXPRESSION TAG SEQADV 3APV MET B 0 UNP P19652 EXPRESSION TAG SEQADV 3APV ARG B 149 UNP P19652 CYS 167 ENGINEERED MUTATION SEQADV 3APV HIS B 184 UNP P19652 EXPRESSION TAG SEQADV 3APV HIS B 185 UNP P19652 EXPRESSION TAG SEQADV 3APV HIS B 186 UNP P19652 EXPRESSION TAG SEQADV 3APV HIS B 187 UNP P19652 EXPRESSION TAG SEQADV 3APV HIS B 188 UNP P19652 EXPRESSION TAG SEQADV 3APV HIS B 189 UNP P19652 EXPRESSION TAG SEQRES 1 A 190 MET GLN ILE PRO LEU CYS ALA ASN LEU VAL PRO VAL PRO SEQRES 2 A 190 ILE THR ASN ALA THR LEU ASP ARG ILE THR GLY LYS TRP SEQRES 3 A 190 PHE TYR ILE ALA SER ALA PHE ARG ASN GLU GLU TYR ASN SEQRES 4 A 190 LYS SER VAL GLN GLU ILE GLN ALA THR PHE PHE TYR PHE SEQRES 5 A 190 THR PRO ASN LYS THR GLU ASP THR ILE PHE LEU ARG GLU SEQRES 6 A 190 TYR GLN THR ARG GLN ASN GLN CYS PHE TYR ASN SER SER SEQRES 7 A 190 TYR LEU ASN VAL GLN ARG GLU ASN GLY THR VAL SER ARG SEQRES 8 A 190 TYR GLU GLY GLY ARG GLU HIS VAL ALA HIS LEU LEU PHE SEQRES 9 A 190 LEU ARG ASP THR LYS THR LEU MET PHE GLY SER TYR LEU SEQRES 10 A 190 ASP ASP GLU LYS ASN TRP GLY LEU SER PHE TYR ALA ASP SEQRES 11 A 190 LYS PRO GLU THR THR LYS GLU GLN LEU GLY GLU PHE TYR SEQRES 12 A 190 GLU ALA LEU ASP CYS LEU ARG ILE PRO ARG SER ASP VAL SEQRES 13 A 190 MET TYR THR ASP TRP LYS LYS ASP LYS CYS GLU PRO LEU SEQRES 14 A 190 GLU LYS GLN HIS GLU LYS GLU ARG LYS GLN GLU GLU GLY SEQRES 15 A 190 GLU SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 190 MET GLN ILE PRO LEU CYS ALA ASN LEU VAL PRO VAL PRO SEQRES 2 B 190 ILE THR ASN ALA THR LEU ASP ARG ILE THR GLY LYS TRP SEQRES 3 B 190 PHE TYR ILE ALA SER ALA PHE ARG ASN GLU GLU TYR ASN SEQRES 4 B 190 LYS SER VAL GLN GLU ILE GLN ALA THR PHE PHE TYR PHE SEQRES 5 B 190 THR PRO ASN LYS THR GLU ASP THR ILE PHE LEU ARG GLU SEQRES 6 B 190 TYR GLN THR ARG GLN ASN GLN CYS PHE TYR ASN SER SER SEQRES 7 B 190 TYR LEU ASN VAL GLN ARG GLU ASN GLY THR VAL SER ARG SEQRES 8 B 190 TYR GLU GLY GLY ARG GLU HIS VAL ALA HIS LEU LEU PHE SEQRES 9 B 190 LEU ARG ASP THR LYS THR LEU MET PHE GLY SER TYR LEU SEQRES 10 B 190 ASP ASP GLU LYS ASN TRP GLY LEU SER PHE TYR ALA ASP SEQRES 11 B 190 LYS PRO GLU THR THR LYS GLU GLN LEU GLY GLU PHE TYR SEQRES 12 B 190 GLU ALA LEU ASP CYS LEU ARG ILE PRO ARG SER ASP VAL SEQRES 13 B 190 MET TYR THR ASP TRP LYS LYS ASP LYS CYS GLU PRO LEU SEQRES 14 B 190 GLU LYS GLN HIS GLU LYS GLU ARG LYS GLN GLU GLU GLY SEQRES 15 B 190 GLU SER HIS HIS HIS HIS HIS HIS HET TP0 A 190 21 HET ACY A 191 4 HET TP0 B 190 21 HETNAM TP0 AMITRIPTYLINE HETNAM ACY ACETIC ACID HETSYN TP0 3-(10,11-DIHYDRO-5H-DIBENZO[A,D][7]ANNULEN-5-YLIDENE)- HETSYN 2 TP0 N,N-DIMETHYLPROPAN-1-AMINE FORMUL 3 TP0 2(C20 H23 N) FORMUL 4 ACY C2 H4 O2 FORMUL 6 HOH *96(H2 O) HELIX 1 1 CYS A 5 VAL A 9 5 5 HELIX 2 2 THR A 14 THR A 22 1 9 HELIX 3 3 ASN A 34 GLN A 42 1 9 HELIX 4 4 THR A 134 LEU A 148 1 15 HELIX 5 5 PRO A 151 VAL A 155 5 5 HELIX 6 6 ASP A 159 ASP A 163 5 5 HELIX 7 7 CYS A 165 HIS A 172 1 8 HELIX 8 8 CYS B 5 VAL B 9 5 5 HELIX 9 9 THR B 14 ILE B 21 1 8 HELIX 10 10 ASN B 34 GLU B 43 1 10 HELIX 11 11 THR B 134 LEU B 148 1 15 HELIX 12 12 PRO B 151 VAL B 155 5 5 HELIX 13 13 ASP B 159 ASP B 163 5 5 HELIX 14 14 CYS B 165 GLU B 175 1 11 SHEET 1 A14 MET A 156 TYR A 157 0 SHEET 2 A14 GLY A 23 PHE A 32 -1 N SER A 30 O MET A 156 SHEET 3 A14 GLY A 123 ALA A 128 -1 O ALA A 128 N PHE A 26 SHEET 4 A14 THR A 109 SER A 114 -1 N LEU A 110 O TYR A 127 SHEET 5 A14 ARG A 95 LEU A 102 -1 N HIS A 100 O GLY A 113 SHEET 6 A14 THR A 87 GLU A 92 -1 N GLU A 92 O ARG A 95 SHEET 7 A14 GLN A 71 GLN A 82 -1 N GLN A 82 O THR A 87 SHEET 8 A14 GLN B 71 GLN B 82 -1 O SER B 76 N SER A 76 SHEET 9 A14 THR B 87 TYR B 91 -1 O SER B 89 N ASN B 80 SHEET 10 A14 GLU B 96 LEU B 102 -1 O HIS B 97 N ARG B 90 SHEET 11 A14 THR B 109 SER B 114 -1 O MET B 111 N LEU B 102 SHEET 12 A14 GLY B 123 ALA B 128 -1 O SER B 125 N PHE B 112 SHEET 13 A14 GLY B 23 PHE B 32 -1 N ALA B 29 O PHE B 126 SHEET 14 A14 MET B 156 TYR B 157 -1 O MET B 156 N SER B 30 SHEET 1 B 8 GLY B 23 PHE B 32 0 SHEET 2 B 8 ILE B 44 ASN B 54 -1 O THR B 47 N TYR B 27 SHEET 3 B 8 THR B 59 ARG B 68 -1 O TYR B 65 N PHE B 48 SHEET 4 B 8 GLN B 71 GLN B 82 -1 O PHE B 73 N GLN B 66 SHEET 5 B 8 THR B 87 TYR B 91 -1 O SER B 89 N ASN B 80 SHEET 6 B 8 GLU B 96 LEU B 102 -1 O HIS B 97 N ARG B 90 SHEET 7 B 8 THR B 109 SER B 114 -1 O MET B 111 N LEU B 102 SHEET 8 B 8 GLY B 123 ALA B 128 -1 O SER B 125 N PHE B 112 SHEET 1 C10 MET B 156 TYR B 157 0 SHEET 2 C10 GLY B 23 PHE B 32 -1 N SER B 30 O MET B 156 SHEET 3 C10 ILE B 44 ASN B 54 -1 O THR B 47 N TYR B 27 SHEET 4 C10 THR B 59 ARG B 68 -1 O TYR B 65 N PHE B 48 SHEET 5 C10 GLN B 71 GLN B 82 -1 O PHE B 73 N GLN B 66 SHEET 6 C10 GLN A 71 GLN A 82 -1 N SER A 76 O SER B 76 SHEET 7 C10 THR A 59 ARG A 68 -1 N LEU A 62 O SER A 77 SHEET 8 C10 ILE A 44 ASN A 54 -1 N ALA A 46 O THR A 67 SHEET 9 C10 GLY A 23 PHE A 32 -1 N GLY A 23 O PHE A 51 SHEET 10 C10 MET A 156 TYR A 157 -1 O MET A 156 N SER A 30 SHEET 1 D 8 GLY A 23 PHE A 32 0 SHEET 2 D 8 ILE A 44 ASN A 54 -1 O PHE A 51 N GLY A 23 SHEET 3 D 8 THR A 59 ARG A 68 -1 O THR A 67 N ALA A 46 SHEET 4 D 8 GLN A 71 GLN A 82 -1 O SER A 77 N LEU A 62 SHEET 5 D 8 THR A 87 GLU A 92 -1 O THR A 87 N GLN A 82 SHEET 6 D 8 ARG A 95 LEU A 102 -1 O ARG A 95 N GLU A 92 SHEET 7 D 8 THR A 109 SER A 114 -1 O GLY A 113 N HIS A 100 SHEET 8 D 8 GLY A 123 ALA A 128 -1 O TYR A 127 N LEU A 110 SSBOND 1 CYS A 5 CYS A 147 1555 1555 2.03 SSBOND 2 CYS A 72 CYS A 165 1555 1555 2.03 SSBOND 3 CYS B 5 CYS B 147 1555 1555 2.04 SSBOND 4 CYS B 72 CYS B 165 1555 1555 2.03 SITE 1 AC1 12 VAL A 41 PHE A 49 PHE A 51 LEU A 62 SITE 2 AC1 12 VAL A 88 ARG A 90 HIS A 97 ALA A 99 SITE 3 AC1 12 PHE A 112 TYR A 127 ACY A 191 HOH A 257 SITE 1 AC2 5 TYR A 27 TYR A 127 TP0 A 190 HOH A 257 SITE 2 AC2 5 HOH A 258 SITE 1 AC3 11 TYR B 37 VAL B 41 PHE B 49 LEU B 62 SITE 2 AC3 11 VAL B 88 HIS B 97 ALA B 99 SER B 125 SITE 3 AC3 11 TYR B 127 HOH B 202 HOH B 208 CRYST1 66.650 45.948 120.732 90.00 92.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015004 0.000000 0.000561 0.00000 SCALE2 0.000000 0.021764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008289 0.00000