HEADER TOXIN 25-OCT-10 3AQ3 TITLE MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DISTURBANCE BY TITLE 2 AGROBACTERIUM PROTEIN 6B COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6B PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: AK6B, A6B PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 358; SOURCE 4 GENE: A6B; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS AGROBACTERIUM 6B, TOXIN, ADP-RIBOSYLATION, MIRNA MACHINERIES EXPDTA X-RAY DIFFRACTION AUTHOR M.M.WANG,Y.A.YUAN REVDAT 1 26-JAN-11 3AQ3 0 JRNL AUTH M.M.WANG,T.SOYANO,S.MACHIDA,J.Y.YANG,C.JUNG,N.H.CHUA, JRNL AUTH 2 Y.A.YUAN JRNL TITL MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DISTURBANCE JRNL TITL 2 BY AGROBACTERIUM PROTEIN 6B JRNL REF GENES DEV. V. 25 64 2011 JRNL REFN ISSN 0890-9369 JRNL PMID 21156810 JRNL DOI 10.1101/GAD.1985511 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 3 NUMBER OF REFLECTIONS : 43896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1458 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 38.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : -1.29000 REMARK 3 B12 (A**2) : 0.43000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4697 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6384 ; 1.180 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 558 ; 6.606 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 250 ;35.361 ;22.760 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 750 ;14.312 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;19.880 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 696 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3671 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1919 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3193 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 228 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2875 ; 0.730 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4534 ; 1.004 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2073 ; 1.730 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1850 ; 2.599 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 37.3148 21.4940 134.3017 REMARK 3 T TENSOR REMARK 3 T11: -0.2062 T22: -0.1556 REMARK 3 T33: -0.2455 T12: -0.0096 REMARK 3 T13: -0.0469 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.7046 L22: 2.5869 REMARK 3 L33: 2.5830 L12: 0.0160 REMARK 3 L13: 0.3942 L23: 0.3840 REMARK 3 S TENSOR REMARK 3 S11: 0.0540 S12: -0.1309 S13: -0.1125 REMARK 3 S21: -0.1620 S22: -0.0605 S23: 0.4145 REMARK 3 S31: 0.1614 S32: -0.2416 S33: 0.0065 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0716 15.4343 104.5628 REMARK 3 T TENSOR REMARK 3 T11: -0.0985 T22: -0.1440 REMARK 3 T33: -0.2349 T12: 0.0355 REMARK 3 T13: -0.0414 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.6856 L22: 2.9309 REMARK 3 L33: 1.9882 L12: -0.2823 REMARK 3 L13: 0.2214 L23: -0.3389 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.0810 S13: 0.0109 REMARK 3 S21: -0.1725 S22: -0.0793 S23: -0.0750 REMARK 3 S31: -0.1649 S32: -0.0342 S33: 0.1056 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 207 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8031 -4.3348 81.2836 REMARK 3 T TENSOR REMARK 3 T11: 0.0755 T22: 0.0089 REMARK 3 T33: -0.0497 T12: 0.0730 REMARK 3 T13: 0.0013 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.0533 L22: 2.1878 REMARK 3 L33: 1.5626 L12: -0.4483 REMARK 3 L13: 0.3913 L23: -0.4831 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: -0.0156 S13: -0.0154 REMARK 3 S21: -0.1548 S22: -0.0388 S23: 0.1994 REMARK 3 S31: 0.0438 S32: -0.1773 S33: -0.0277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AQ3 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-10. REMARK 100 THE RCSB ID CODE IS RCSB029554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43896 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 84.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM FORMATE, BIS-TRIS, PH 5.9, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 163.80533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.90267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.90267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 163.80533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 166 REMARK 465 GLU A 167 REMARK 465 ASP A 168 REMARK 465 ASN A 169 REMARK 465 GLU A 170 REMARK 465 GLY A 171 REMARK 465 ILE A 172 REMARK 465 GLU A 173 REMARK 465 ASN A 174 REMARK 465 GLU A 175 REMARK 465 GLU A 176 REMARK 465 GLU A 177 REMARK 465 GLU A 178 REMARK 465 GLU A 179 REMARK 465 GLU A 180 REMARK 465 GLU A 181 REMARK 465 GLU A 182 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 167 REMARK 465 ASP B 168 REMARK 465 ASN B 169 REMARK 465 GLU B 170 REMARK 465 GLY B 171 REMARK 465 ILE B 172 REMARK 465 GLU B 173 REMARK 465 ASN B 174 REMARK 465 GLU B 175 REMARK 465 GLU B 176 REMARK 465 GLU B 177 REMARK 465 GLU B 178 REMARK 465 GLU B 179 REMARK 465 GLU B 180 REMARK 465 GLU B 181 REMARK 465 GLU B 182 REMARK 465 GLU B 183 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MSE C 1 REMARK 465 ASP C 168 REMARK 465 ASN C 169 REMARK 465 GLU C 170 REMARK 465 GLY C 171 REMARK 465 ILE C 172 REMARK 465 GLU C 173 REMARK 465 ASN C 174 REMARK 465 GLU C 175 REMARK 465 GLU C 176 REMARK 465 GLU C 177 REMARK 465 GLU C 178 REMARK 465 GLU C 179 REMARK 465 GLU C 180 REMARK 465 GLU C 181 REMARK 465 GLU C 182 REMARK 465 GLU C 183 REMARK 465 ARG C 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 151 O HOH C 285 4656 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 38 113.54 63.25 REMARK 500 PHE A 41 -21.80 -144.98 REMARK 500 LEU A 159 -148.75 60.96 REMARK 500 ASN A 161 74.02 -103.92 REMARK 500 PHE B 41 -8.95 -154.05 REMARK 500 ASP B 52 -169.47 -74.45 REMARK 500 LEU B 159 -144.84 55.73 REMARK 500 SER C 33 -108.53 33.27 REMARK 500 PHE C 41 -29.00 -149.16 REMARK 500 ASN C 49 -6.67 88.72 REMARK 500 ASP C 52 -167.83 -70.35 REMARK 500 LEU C 159 -143.86 55.10 REMARK 500 ASN C 161 79.52 -101.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AQ2 RELATED DB: PDB REMARK 900 RELATED ID: 3AQ4 RELATED DB: PDB DBREF 3AQ3 A 1 208 UNP Q57530 Q57530_RHIRD 1 208 DBREF 3AQ3 B 1 208 UNP Q57530 Q57530_RHIRD 1 208 DBREF 3AQ3 C 1 208 UNP Q57530 Q57530_RHIRD 1 208 SEQADV 3AQ3 GLY A -2 UNP Q57530 EXPRESSION TAG SEQADV 3AQ3 SER A -1 UNP Q57530 EXPRESSION TAG SEQADV 3AQ3 HIS A 0 UNP Q57530 EXPRESSION TAG SEQADV 3AQ3 GLY B -2 UNP Q57530 EXPRESSION TAG SEQADV 3AQ3 SER B -1 UNP Q57530 EXPRESSION TAG SEQADV 3AQ3 HIS B 0 UNP Q57530 EXPRESSION TAG SEQADV 3AQ3 GLY C -2 UNP Q57530 EXPRESSION TAG SEQADV 3AQ3 SER C -1 UNP Q57530 EXPRESSION TAG SEQADV 3AQ3 HIS C 0 UNP Q57530 EXPRESSION TAG SEQRES 1 A 211 GLY SER HIS MSE THR VAL PRO THR TRP GLN VAL ARG ASP SEQRES 2 A 211 LEU ARG ARG ILE LEU ARG VAL SER GLU LEU ARG GLN HIS SEQRES 3 A 211 LEU ARG GLN ALA ARG THR ASP PHE ARG SER THR LEU SER SEQRES 4 A 211 GLN PHE VAL TYR PHE ASN ARG SER VAL VAL ASN PRO ASN SEQRES 5 A 211 ALA TYR ASP ASP GLU TYR LEU LEU SER ASP GLN ARG LEU SEQRES 6 A 211 THR TYR VAL TYR VAL ASP GLU VAL THR ALA GLN LEU CYS SEQRES 7 A 211 GLY LEU ASN ARG LEU LEU PRO SER ASN SER PRO ALA PHE SEQRES 8 A 211 GLY THR VAL ALA THR ALA MSE PRO PRO TRP LEU LEU ASP SEQRES 9 A 211 PRO GLN GLU MSE ASN ALA ILE LEU GLN GLN SER CYS GLY SEQRES 10 A 211 GLN GLY GLY PHE VAL ASN TYR HIS HIS GLY PRO SER THR SEQRES 11 A 211 ASN SER PHE PHE LEU ALA ILE LEU MSE SER GLN LEU PHE SEQRES 12 A 211 ILE ARG ILE ARG THR ASP VAL ILE ARG GLY GLN GLY TYR SEQRES 13 A 211 GLY TRP TYR ALA ARG LEU GLY ASN TYR VAL GLU GLU GLY SEQRES 14 A 211 GLU ASP ASN GLU GLY ILE GLU ASN GLU GLU GLU GLU GLU SEQRES 15 A 211 GLU GLU GLU GLU GLU THR ARG GLU PHE GLN LEU SER ASP SEQRES 16 A 211 LEU ILE HIS TYR PRO ILE VAL ALA LEU GLY SER CYS HIS SEQRES 17 A 211 LEU THR ARG SEQRES 1 B 211 GLY SER HIS MSE THR VAL PRO THR TRP GLN VAL ARG ASP SEQRES 2 B 211 LEU ARG ARG ILE LEU ARG VAL SER GLU LEU ARG GLN HIS SEQRES 3 B 211 LEU ARG GLN ALA ARG THR ASP PHE ARG SER THR LEU SER SEQRES 4 B 211 GLN PHE VAL TYR PHE ASN ARG SER VAL VAL ASN PRO ASN SEQRES 5 B 211 ALA TYR ASP ASP GLU TYR LEU LEU SER ASP GLN ARG LEU SEQRES 6 B 211 THR TYR VAL TYR VAL ASP GLU VAL THR ALA GLN LEU CYS SEQRES 7 B 211 GLY LEU ASN ARG LEU LEU PRO SER ASN SER PRO ALA PHE SEQRES 8 B 211 GLY THR VAL ALA THR ALA MSE PRO PRO TRP LEU LEU ASP SEQRES 9 B 211 PRO GLN GLU MSE ASN ALA ILE LEU GLN GLN SER CYS GLY SEQRES 10 B 211 GLN GLY GLY PHE VAL ASN TYR HIS HIS GLY PRO SER THR SEQRES 11 B 211 ASN SER PHE PHE LEU ALA ILE LEU MSE SER GLN LEU PHE SEQRES 12 B 211 ILE ARG ILE ARG THR ASP VAL ILE ARG GLY GLN GLY TYR SEQRES 13 B 211 GLY TRP TYR ALA ARG LEU GLY ASN TYR VAL GLU GLU GLY SEQRES 14 B 211 GLU ASP ASN GLU GLY ILE GLU ASN GLU GLU GLU GLU GLU SEQRES 15 B 211 GLU GLU GLU GLU GLU THR ARG GLU PHE GLN LEU SER ASP SEQRES 16 B 211 LEU ILE HIS TYR PRO ILE VAL ALA LEU GLY SER CYS HIS SEQRES 17 B 211 LEU THR ARG SEQRES 1 C 211 GLY SER HIS MSE THR VAL PRO THR TRP GLN VAL ARG ASP SEQRES 2 C 211 LEU ARG ARG ILE LEU ARG VAL SER GLU LEU ARG GLN HIS SEQRES 3 C 211 LEU ARG GLN ALA ARG THR ASP PHE ARG SER THR LEU SER SEQRES 4 C 211 GLN PHE VAL TYR PHE ASN ARG SER VAL VAL ASN PRO ASN SEQRES 5 C 211 ALA TYR ASP ASP GLU TYR LEU LEU SER ASP GLN ARG LEU SEQRES 6 C 211 THR TYR VAL TYR VAL ASP GLU VAL THR ALA GLN LEU CYS SEQRES 7 C 211 GLY LEU ASN ARG LEU LEU PRO SER ASN SER PRO ALA PHE SEQRES 8 C 211 GLY THR VAL ALA THR ALA MSE PRO PRO TRP LEU LEU ASP SEQRES 9 C 211 PRO GLN GLU MSE ASN ALA ILE LEU GLN GLN SER CYS GLY SEQRES 10 C 211 GLN GLY GLY PHE VAL ASN TYR HIS HIS GLY PRO SER THR SEQRES 11 C 211 ASN SER PHE PHE LEU ALA ILE LEU MSE SER GLN LEU PHE SEQRES 12 C 211 ILE ARG ILE ARG THR ASP VAL ILE ARG GLY GLN GLY TYR SEQRES 13 C 211 GLY TRP TYR ALA ARG LEU GLY ASN TYR VAL GLU GLU GLY SEQRES 14 C 211 GLU ASP ASN GLU GLY ILE GLU ASN GLU GLU GLU GLU GLU SEQRES 15 C 211 GLU GLU GLU GLU GLU THR ARG GLU PHE GLN LEU SER ASP SEQRES 16 C 211 LEU ILE HIS TYR PRO ILE VAL ALA LEU GLY SER CYS HIS SEQRES 17 C 211 LEU THR ARG MODRES 3AQ3 MSE A 95 MET SELENOMETHIONINE MODRES 3AQ3 MSE A 105 MET SELENOMETHIONINE MODRES 3AQ3 MSE A 136 MET SELENOMETHIONINE MODRES 3AQ3 MSE B 95 MET SELENOMETHIONINE MODRES 3AQ3 MSE B 105 MET SELENOMETHIONINE MODRES 3AQ3 MSE B 136 MET SELENOMETHIONINE MODRES 3AQ3 MSE C 95 MET SELENOMETHIONINE MODRES 3AQ3 MSE C 105 MET SELENOMETHIONINE MODRES 3AQ3 MSE C 136 MET SELENOMETHIONINE HET MSE A 95 8 HET MSE A 105 8 HET MSE A 136 8 HET MSE B 95 8 HET MSE B 105 8 HET MSE B 136 8 HET MSE C 95 8 HET MSE C 105 8 HET MSE C 136 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 4 HOH *258(H2 O) HELIX 1 1 ARG A 16 THR A 34 1 19 HELIX 2 2 ASP A 68 LEU A 77 1 10 HELIX 3 3 ASP A 101 CYS A 113 1 13 HELIX 4 4 ASN A 120 ASN A 128 5 9 HELIX 5 5 ARG B 16 SER B 33 1 18 HELIX 6 6 ASP B 68 LEU B 77 1 10 HELIX 7 7 ASP B 101 CYS B 113 1 13 HELIX 8 8 ASN B 120 ASN B 128 5 9 HELIX 9 9 ARG C 16 SER C 33 1 18 HELIX 10 10 ASP C 68 ASN C 78 1 11 HELIX 11 11 ASP C 101 CYS C 113 1 13 HELIX 12 12 ASN C 120 ASN C 128 5 9 SHEET 1 A 4 ARG A 9 ASP A 10 0 SHEET 2 A 4 ALA A 200 SER A 203 1 O LEU A 201 N ARG A 9 SHEET 3 A 4 PHE A 130 ILE A 134 -1 N ALA A 133 O ALA A 200 SHEET 4 A 4 THR A 63 VAL A 67 -1 N THR A 63 O ILE A 134 SHEET 1 B 2 LEU A 80 PRO A 82 0 SHEET 2 B 2 LEU A 193 HIS A 195 -1 O ILE A 194 N LEU A 81 SHEET 1 C 3 THR A 90 THR A 93 0 SHEET 2 C 3 GLN A 151 ARG A 158 -1 O TYR A 156 N ALA A 92 SHEET 3 C 3 PHE A 140 ILE A 148 -1 N ILE A 148 O GLN A 151 SHEET 1 D 4 ARG B 9 ASP B 10 0 SHEET 2 D 4 ALA B 200 SER B 203 1 O LEU B 201 N ARG B 9 SHEET 3 D 4 PHE B 130 ILE B 134 -1 N ALA B 133 O ALA B 200 SHEET 4 D 4 THR B 63 VAL B 67 -1 N VAL B 65 O LEU B 132 SHEET 1 E 2 LEU B 80 PRO B 82 0 SHEET 2 E 2 LEU B 193 HIS B 195 -1 O ILE B 194 N LEU B 81 SHEET 1 F 3 THR B 90 THR B 93 0 SHEET 2 F 3 GLN B 151 ARG B 158 -1 O TYR B 156 N ALA B 92 SHEET 3 F 3 PHE B 140 ILE B 148 -1 N ILE B 143 O TRP B 155 SHEET 1 G 4 ARG C 9 ASP C 10 0 SHEET 2 G 4 ALA C 200 SER C 203 1 O LEU C 201 N ARG C 9 SHEET 3 G 4 PHE C 130 ILE C 134 -1 N ALA C 133 O ALA C 200 SHEET 4 G 4 THR C 63 VAL C 67 -1 N VAL C 67 O PHE C 130 SHEET 1 H 2 PHE C 38 TYR C 40 0 SHEET 2 H 2 TYR C 55 LEU C 57 -1 O LEU C 56 N VAL C 39 SHEET 1 I 2 LEU C 80 PRO C 82 0 SHEET 2 I 2 LEU C 193 HIS C 195 -1 O ILE C 194 N LEU C 81 SHEET 1 J 3 THR C 90 THR C 93 0 SHEET 2 J 3 GLN C 151 ARG C 158 -1 O TYR C 156 N ALA C 92 SHEET 3 J 3 PHE C 140 ILE C 148 -1 N ILE C 143 O TRP C 155 LINK C ALA A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N PRO A 96 1555 1555 1.35 LINK C GLU A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N ASN A 106 1555 1555 1.34 LINK C LEU A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N SER A 137 1555 1555 1.33 LINK C ALA B 94 N MSE B 95 1555 1555 1.33 LINK C MSE B 95 N PRO B 96 1555 1555 1.35 LINK C GLU B 104 N MSE B 105 1555 1555 1.33 LINK C MSE B 105 N ASN B 106 1555 1555 1.33 LINK C LEU B 135 N MSE B 136 1555 1555 1.33 LINK C MSE B 136 N SER B 137 1555 1555 1.33 LINK C ALA C 94 N MSE C 95 1555 1555 1.33 LINK C MSE C 95 N PRO C 96 1555 1555 1.34 LINK C GLU C 104 N MSE C 105 1555 1555 1.33 LINK C MSE C 105 N ASN C 106 1555 1555 1.33 LINK C LEU C 135 N MSE C 136 1555 1555 1.33 LINK C MSE C 136 N SER C 137 1555 1555 1.33 CRYST1 80.458 80.458 245.708 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012429 0.007176 0.000000 0.00000 SCALE2 0.000000 0.014352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004070 0.00000