HEADER TOXIN 25-OCT-10 3AQ4 TITLE MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DISTURBANCE BY TITLE 2 AGROBACTERIUM PROTEIN 6B COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATARF1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ARF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ADP-RIBOSYLATION FACTOR, MIRNA PROCESSING MACHINERIES, TOXIN, ADP- KEYWDS 2 RIBOSYLATION EXPDTA X-RAY DIFFRACTION AUTHOR M.M.WANG,Y.A.YUAN REVDAT 2 13-MAR-24 3AQ4 1 REMARK SEQADV LINK REVDAT 1 26-JAN-11 3AQ4 0 JRNL AUTH M.M.WANG,T.SOYANO,S.MACHIDA,J.Y.YANG,C.JUNG,N.H.CHUA, JRNL AUTH 2 Y.A.YUAN JRNL TITL MOLECULAR INSIGHTS INTO PLANT CELL PROLIFERATION DISTURBANCE JRNL TITL 2 BY AGROBACTERIUM PROTEIN 6B JRNL REF GENES DEV. V. 25 64 2011 JRNL REFN ISSN 0890-9369 JRNL PMID 21156810 JRNL DOI 10.1101/GAD.1985511 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1750 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2665 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.810 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2770 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3753 ; 1.496 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 6.081 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;32.567 ;24.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 491 ;14.529 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.401 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2032 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1208 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1855 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 217 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.032 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.342 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1692 ; 1.028 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2642 ; 1.616 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1255 ; 2.482 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1111 ; 3.852 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 181 REMARK 3 RESIDUE RANGE : B 4 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1465 12.3102 11.3442 REMARK 3 T TENSOR REMARK 3 T11: -0.1132 T22: -0.1070 REMARK 3 T33: -0.1083 T12: 0.0059 REMARK 3 T13: 0.0140 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.6879 L22: 1.8466 REMARK 3 L33: 0.4141 L12: 1.4822 REMARK 3 L13: -0.6108 L23: -0.6418 REMARK 3 S TENSOR REMARK 3 S11: -0.1182 S12: 0.1039 S13: -0.1576 REMARK 3 S21: -0.1610 S22: 0.0718 S23: -0.1166 REMARK 3 S31: 0.0408 S32: 0.0139 S33: 0.0464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AQ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000029555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33083 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 89.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, MAGNESIUM CHLORIDE, HEPES, PH REMARK 280 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.35500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.98850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.35500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.98850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 70 REMARK 465 GLN A 71 REMARK 465 ASP A 72 REMARK 465 LYS A 73 REMARK 465 ILE A 74 REMARK 465 ARG A 75 REMARK 465 PRO A 76 REMARK 465 ALA A 181 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 70 REMARK 465 GLN B 71 REMARK 465 ASP B 72 REMARK 465 LYS B 73 REMARK 465 ILE B 74 REMARK 465 ARG B 75 REMARK 465 PRO B 76 REMARK 465 LEU B 77 REMARK 465 TRP B 78 REMARK 465 ARG B 79 REMARK 465 HIS B 80 REMARK 465 TYR B 81 REMARK 465 PHE B 82 REMARK 465 GLN B 83 REMARK 465 ALA B 181 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LYS A 180 O HOH A 197 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ARG A 149 O ARG A 149 2555 1.78 REMARK 500 O GLN A 150 O GLN A 150 2555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 59 -122.88 52.18 REMARK 500 LYS A 127 35.49 70.41 REMARK 500 ALA B 14 175.30 179.20 REMARK 500 LYS B 59 -124.43 54.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 182 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 31 OG1 REMARK 620 2 GDP A 183 O1B 91.8 REMARK 620 3 HOH A 224 O 93.5 86.1 REMARK 620 4 HOH A 307 O 175.0 93.1 85.7 REMARK 620 5 HOH A 308 O 90.7 172.0 86.2 84.3 REMARK 620 6 HOH A 309 O 92.5 93.7 174.0 88.3 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 182 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 31 OG1 REMARK 620 2 GDP B 183 O1B 91.3 REMARK 620 3 HOH B 191 O 90.3 89.3 REMARK 620 4 HOH B 219 O 91.8 97.1 173.2 REMARK 620 5 HOH B 282 O 86.4 170.7 81.8 91.9 REMARK 620 6 HOH B 294 O 175.3 93.0 87.8 89.6 89.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 183 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AQ2 RELATED DB: PDB REMARK 900 RELATED ID: 3AQ3 RELATED DB: PDB DBREF 3AQ4 A 1 181 UNP P36397 ARF1_ARATH 1 181 DBREF 3AQ4 B 1 181 UNP P36397 ARF1_ARATH 1 181 SEQADV 3AQ4 GLY A -2 UNP P36397 EXPRESSION TAG SEQADV 3AQ4 SER A -1 UNP P36397 EXPRESSION TAG SEQADV 3AQ4 HIS A 0 UNP P36397 EXPRESSION TAG SEQADV 3AQ4 GLY B -2 UNP P36397 EXPRESSION TAG SEQADV 3AQ4 SER B -1 UNP P36397 EXPRESSION TAG SEQADV 3AQ4 HIS B 0 UNP P36397 EXPRESSION TAG SEQRES 1 A 184 GLY SER HIS MET GLY LEU SER PHE GLY LYS LEU PHE SER SEQRES 2 A 184 ARG LEU PHE ALA LYS LYS GLU MET ARG ILE LEU MET VAL SEQRES 3 A 184 GLY LEU ASP ALA ALA GLY LYS THR THR ILE LEU TYR LYS SEQRES 4 A 184 LEU LYS LEU GLY GLU ILE VAL THR THR ILE PRO THR ILE SEQRES 5 A 184 GLY PHE ASN VAL GLU THR VAL GLU TYR LYS ASN ILE SER SEQRES 6 A 184 PHE THR VAL TRP ASP VAL GLY GLY GLN ASP LYS ILE ARG SEQRES 7 A 184 PRO LEU TRP ARG HIS TYR PHE GLN ASN THR GLN GLY LEU SEQRES 8 A 184 ILE PHE VAL VAL ASP SER ASN ASP ARG ASP ARG VAL VAL SEQRES 9 A 184 GLU ALA ARG ASP GLU LEU HIS ARG MET LEU ASN GLU ASP SEQRES 10 A 184 GLU LEU ARG ASP ALA VAL LEU LEU VAL PHE ALA ASN LYS SEQRES 11 A 184 GLN ASP LEU PRO ASN ALA MET ASN ALA ALA GLU ILE THR SEQRES 12 A 184 ASP LYS LEU GLY LEU HIS SER LEU ARG GLN ARG HIS TRP SEQRES 13 A 184 TYR ILE GLN SER THR CYS ALA THR SER GLY GLU GLY LEU SEQRES 14 A 184 TYR GLU GLY LEU ASP TRP LEU SER ASN ASN ILE ALA SER SEQRES 15 A 184 LYS ALA SEQRES 1 B 184 GLY SER HIS MET GLY LEU SER PHE GLY LYS LEU PHE SER SEQRES 2 B 184 ARG LEU PHE ALA LYS LYS GLU MET ARG ILE LEU MET VAL SEQRES 3 B 184 GLY LEU ASP ALA ALA GLY LYS THR THR ILE LEU TYR LYS SEQRES 4 B 184 LEU LYS LEU GLY GLU ILE VAL THR THR ILE PRO THR ILE SEQRES 5 B 184 GLY PHE ASN VAL GLU THR VAL GLU TYR LYS ASN ILE SER SEQRES 6 B 184 PHE THR VAL TRP ASP VAL GLY GLY GLN ASP LYS ILE ARG SEQRES 7 B 184 PRO LEU TRP ARG HIS TYR PHE GLN ASN THR GLN GLY LEU SEQRES 8 B 184 ILE PHE VAL VAL ASP SER ASN ASP ARG ASP ARG VAL VAL SEQRES 9 B 184 GLU ALA ARG ASP GLU LEU HIS ARG MET LEU ASN GLU ASP SEQRES 10 B 184 GLU LEU ARG ASP ALA VAL LEU LEU VAL PHE ALA ASN LYS SEQRES 11 B 184 GLN ASP LEU PRO ASN ALA MET ASN ALA ALA GLU ILE THR SEQRES 12 B 184 ASP LYS LEU GLY LEU HIS SER LEU ARG GLN ARG HIS TRP SEQRES 13 B 184 TYR ILE GLN SER THR CYS ALA THR SER GLY GLU GLY LEU SEQRES 14 B 184 TYR GLU GLY LEU ASP TRP LEU SER ASN ASN ILE ALA SER SEQRES 15 B 184 LYS ALA HET MG A 182 1 HET GDP A 183 28 HET MG B 182 1 HET GDP B 183 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 HOH *290(H2 O) HELIX 1 1 SER A 4 SER A 10 1 7 HELIX 2 2 ARG A 11 PHE A 13 5 3 HELIX 3 3 GLY A 29 LYS A 38 1 10 HELIX 4 4 TRP A 78 GLN A 83 5 6 HELIX 5 5 ASP A 96 ASP A 98 5 3 HELIX 6 6 ARG A 99 ASN A 112 1 14 HELIX 7 7 GLU A 113 ARG A 117 5 5 HELIX 8 8 ASN A 135 LEU A 143 1 9 HELIX 9 9 GLY A 144 LEU A 148 5 5 HELIX 10 10 GLY A 165 SER A 179 1 15 HELIX 11 11 SER B 4 SER B 10 1 7 HELIX 12 12 ARG B 11 PHE B 13 5 3 HELIX 13 13 GLY B 29 LEU B 37 1 9 HELIX 14 14 ASP B 96 ASP B 98 5 3 HELIX 15 15 ARG B 99 GLU B 113 1 15 HELIX 16 16 ASP B 114 ARG B 117 5 4 HELIX 17 17 ASN B 135 LEU B 143 1 9 HELIX 18 18 GLY B 144 LEU B 148 5 5 HELIX 19 19 GLY B 165 SER B 179 1 15 SHEET 1 A14 TRP A 153 SER A 157 0 SHEET 2 A14 VAL A 120 ASN A 126 1 N VAL A 123 O TYR A 154 SHEET 3 A14 THR A 85 ASP A 93 1 N LEU A 88 O VAL A 120 SHEET 4 A14 MET A 18 LEU A 25 1 N LEU A 21 O ILE A 89 SHEET 5 A14 ILE A 61 VAL A 68 1 O THR A 64 N MET A 22 SHEET 6 A14 PHE A 51 TYR A 58 -1 N VAL A 56 O PHE A 63 SHEET 7 A14 ILE A 42 THR A 48 -1 N THR A 45 O VAL A 53 SHEET 8 A14 ILE B 42 THR B 48 -1 O THR B 44 N ILE A 42 SHEET 9 A14 PHE B 51 TYR B 58 -1 O VAL B 53 N THR B 45 SHEET 10 A14 ILE B 61 VAL B 68 -1 O PHE B 63 N VAL B 56 SHEET 11 A14 MET B 18 LEU B 25 1 N MET B 22 O THR B 64 SHEET 12 A14 THR B 85 ASP B 93 1 O ILE B 89 N LEU B 21 SHEET 13 A14 VAL B 120 ASN B 126 1 O LEU B 122 N LEU B 88 SHEET 14 A14 TRP B 153 SER B 157 1 O GLN B 156 N VAL B 123 LINK OG1 THR A 31 MG MG A 182 1555 1555 2.08 LINK MG MG A 182 O1B GDP A 183 1555 1555 1.96 LINK MG MG A 182 O HOH A 224 1555 1555 2.15 LINK MG MG A 182 O HOH A 307 1555 1555 2.09 LINK MG MG A 182 O HOH A 308 1555 1555 2.06 LINK MG MG A 182 O HOH A 309 1555 1555 2.09 LINK OG1 THR B 31 MG MG B 182 1555 1555 2.13 LINK MG MG B 182 O1B GDP B 183 1555 1555 2.02 LINK MG MG B 182 O HOH B 191 1555 1555 2.20 LINK MG MG B 182 O HOH B 219 1555 1555 2.03 LINK MG MG B 182 O HOH B 282 1555 1555 2.13 LINK MG MG B 182 O HOH B 294 1555 1555 2.13 SITE 1 AC1 6 THR A 31 GDP A 183 HOH A 224 HOH A 307 SITE 2 AC1 6 HOH A 308 HOH A 309 SITE 1 AC2 25 ASP A 26 ALA A 27 ALA A 28 GLY A 29 SITE 2 AC2 25 LYS A 30 THR A 31 THR A 32 ASN A 126 SITE 3 AC2 25 LYS A 127 ASP A 129 LEU A 130 CYS A 159 SITE 4 AC2 25 ALA A 160 MG A 182 HOH A 215 HOH A 216 SITE 5 AC2 25 HOH A 224 HOH A 238 HOH A 246 HOH A 304 SITE 6 AC2 25 HOH A 305 HOH A 307 HOH A 309 GLY B 50 SITE 7 AC2 25 ASN B 52 SITE 1 AC3 6 THR B 31 GDP B 183 HOH B 191 HOH B 219 SITE 2 AC3 6 HOH B 282 HOH B 294 SITE 1 AC4 25 GLY A 50 ASN A 52 ALA B 27 ALA B 28 SITE 2 AC4 25 GLY B 29 LYS B 30 THR B 31 THR B 32 SITE 3 AC4 25 ASN B 126 LYS B 127 ASP B 129 LEU B 130 SITE 4 AC4 25 CYS B 159 ALA B 160 THR B 161 MG B 182 SITE 5 AC4 25 HOH B 191 HOH B 203 HOH B 205 HOH B 218 SITE 6 AC4 25 HOH B 219 HOH B 246 HOH B 293 HOH B 294 SITE 7 AC4 25 HOH B 310 CRYST1 88.710 89.977 46.049 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021716 0.00000