HEADER TRANSFERASE 09-NOV-10 3AQN TITLE COMPLEX STRUCTURE OF BACTERIAL PROTEIN (APO FORM II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(A) POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 17-431; COMPND 5 EC: 2.7.7.19; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 536056; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ECDH1_3459; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 536056; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TRANSFERASE/RNA, ATP-BINDING, NUCLEOTIDE-BINDING, RNA-BINDING, KEYWDS 2 TRANSFERASE, NUCLEOTIDYLTRANSFERASE, ATP BINDING, A-PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.TOH,D.TAKESHITA,K.TOMITA REVDAT 3 01-NOV-23 3AQN 1 REMARK SEQADV REVDAT 2 31-JUL-13 3AQN 1 JRNL VERSN REVDAT 1 09-FEB-11 3AQN 0 JRNL AUTH Y.TOH,D.TAKESHITA,T.NAGAIKE,T.NUMATA,K.TOMITA JRNL TITL MECHANISM FOR THE ALTERATION OF THE SUBSTRATE SPECIFICITIES JRNL TITL 2 OF TEMPLATE-INDEPENDENT RNA POLYMERASES JRNL REF STRUCTURE V. 19 232 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21300291 JRNL DOI 10.1016/J.STR.2010.12.006 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 7931703.860 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 23983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1188 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3679 REMARK 3 BIN R VALUE (WORKING SET) : 0.4690 REMARK 3 BIN FREE R VALUE : 0.4780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 178 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6328 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 128.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.97000 REMARK 3 B22 (A**2) : 19.97000 REMARK 3 B33 (A**2) : -39.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.56 REMARK 3 ESD FROM SIGMAA (A) : 1.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.62 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.350 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 6.860 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 11.920; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.370 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 13.440; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 54.17 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : ATP2.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : ATP2.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3AQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000029574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28475 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46200 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3AQK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-CL, PH 8.0, 1.2M SODIUM REMARK 280 ACETATE, 5MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 66.20000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.14550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.20000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 66.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.14550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.14550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 66.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.14550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 GLU A 117 REMARK 465 GLY A 118 REMARK 465 ASN A 119 REMARK 465 VAL A 120 REMARK 465 SER A 121 REMARK 465 ASP A 122 REMARK 465 ARG A 123 REMARK 465 THR A 124 REMARK 465 THR A 125 REMARK 465 SER A 126 REMARK 465 GLN A 127 REMARK 465 ARG A 128 REMARK 465 GLY A 129 REMARK 465 GLN A 130 REMARK 465 ASN A 131 REMARK 465 GLY A 132 REMARK 465 MET A 133 REMARK 465 LEU A 134 REMARK 465 LEU A 135 REMARK 465 ARG A 136 REMARK 465 ASP A 137 REMARK 465 ASN A 428 REMARK 465 GLU A 429 REMARK 465 LEU A 430 REMARK 465 ASP A 431 REMARK 465 HIS B 115 REMARK 465 HIS B 116 REMARK 465 GLU B 117 REMARK 465 GLY B 118 REMARK 465 ASN B 119 REMARK 465 VAL B 120 REMARK 465 SER B 121 REMARK 465 ASP B 122 REMARK 465 ARG B 123 REMARK 465 THR B 124 REMARK 465 THR B 125 REMARK 465 SER B 126 REMARK 465 GLN B 127 REMARK 465 ARG B 128 REMARK 465 GLY B 129 REMARK 465 GLN B 130 REMARK 465 ASN B 131 REMARK 465 GLY B 132 REMARK 465 MET B 133 REMARK 465 LEU B 134 REMARK 465 LEU B 135 REMARK 465 ARG B 136 REMARK 465 ASP B 137 REMARK 465 ASN B 428 REMARK 465 GLU B 429 REMARK 465 LEU B 430 REMARK 465 ASP B 431 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 22 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 ALA A 27 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 ARG B 94 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 28 19.83 -51.27 REMARK 500 SER A 29 109.27 -13.59 REMARK 500 ARG A 93 -177.33 77.31 REMARK 500 ARG A 94 111.00 81.53 REMARK 500 ARG A 96 -133.80 56.90 REMARK 500 PHE A 102 -88.89 -129.61 REMARK 500 ASP A 163 2.37 -151.08 REMARK 500 LEU A 226 -19.07 -38.53 REMARK 500 GLU B 35 -155.61 62.86 REMARK 500 ARG B 93 -118.40 -66.49 REMARK 500 ARG B 94 -174.58 107.14 REMARK 500 ARG B 96 -136.94 54.75 REMARK 500 LEU B 97 97.64 31.45 REMARK 500 PRO B 104 7.84 -41.84 REMARK 500 ASP B 151 -90.52 -67.41 REMARK 500 SER B 348 -74.33 -101.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 600 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 108 OE1 REMARK 620 2 GLU A 108 OE2 48.2 REMARK 620 3 ATP A 501 O1A 153.7 135.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AQK RELATED DB: PDB REMARK 900 RELATED ID: 3AQL RELATED DB: PDB REMARK 900 RELATED ID: 3AQM RELATED DB: PDB DBREF 3AQN A 17 431 UNP C9QS13 C9QS13_ECOD1 17 431 DBREF 3AQN B 17 431 UNP C9QS13 C9QS13_ECOD1 17 431 SEQADV 3AQN HIS A 234 UNP C9QS13 ARG 234 ENGINEERED MUTATION SEQADV 3AQN HIS B 234 UNP C9QS13 ARG 234 ENGINEERED MUTATION SEQRES 1 A 415 GLN VAL THR VAL ILE PRO ARG GLU GLN HIS ALA ILE SER SEQRES 2 A 415 ARG LYS ASP ILE SER GLU ASN ALA LEU LYS VAL MET TYR SEQRES 3 A 415 ARG LEU ASN LYS ALA GLY TYR GLU ALA TRP LEU VAL GLY SEQRES 4 A 415 GLY GLY VAL ARG ASP LEU LEU LEU GLY LYS LYS PRO LYS SEQRES 5 A 415 ASP PHE ASP VAL THR THR ASN ALA THR PRO GLU GLN VAL SEQRES 6 A 415 ARG LYS LEU PHE ARG ASN CYS ARG LEU VAL GLY ARG ARG SEQRES 7 A 415 PHE ARG LEU ALA HIS VAL MET PHE GLY PRO GLU ILE ILE SEQRES 8 A 415 GLU VAL ALA THR PHE ARG GLY HIS HIS GLU GLY ASN VAL SEQRES 9 A 415 SER ASP ARG THR THR SER GLN ARG GLY GLN ASN GLY MET SEQRES 10 A 415 LEU LEU ARG ASP ASN ILE PHE GLY SER ILE GLU GLU ASP SEQRES 11 A 415 ALA GLN ARG ARG ASP PHE THR ILE ASN SER LEU TYR TYR SEQRES 12 A 415 SER VAL ALA ASP PHE THR VAL ARG ASP TYR VAL GLY GLY SEQRES 13 A 415 MET LYS ASP LEU LYS ASP GLY VAL ILE ARG LEU ILE GLY SEQRES 14 A 415 ASN PRO GLU THR ARG TYR ARG GLU ASP PRO VAL ARG MET SEQRES 15 A 415 LEU ARG ALA VAL ARG PHE ALA ALA LYS LEU GLY MET ARG SEQRES 16 A 415 ILE SER PRO GLU THR ALA GLU PRO ILE PRO ARG LEU ALA SEQRES 17 A 415 THR LEU LEU ASN ASP ILE PRO PRO ALA HIS LEU PHE GLU SEQRES 18 A 415 GLU SER LEU LYS LEU LEU GLN ALA GLY TYR GLY TYR GLU SEQRES 19 A 415 THR TYR LYS LEU LEU CYS GLU TYR HIS LEU PHE GLN PRO SEQRES 20 A 415 LEU PHE PRO THR ILE THR ARG TYR PHE THR GLU ASN GLY SEQRES 21 A 415 ASP SER PRO MET GLU ARG ILE ILE GLU GLN VAL LEU LYS SEQRES 22 A 415 ASN THR ASP THR ARG ILE HIS ASN ASP MET ARG VAL ASN SEQRES 23 A 415 PRO ALA PHE LEU PHE ALA ALA MET PHE TRP TYR PRO LEU SEQRES 24 A 415 LEU GLU THR ALA GLN LYS ILE ALA GLN GLU SER GLY LEU SEQRES 25 A 415 THR TYR HIS ASP ALA PHE ALA LEU ALA MET ASN ASP VAL SEQRES 26 A 415 LEU ASP GLU ALA CYS ARG SER LEU ALA ILE PRO LYS ARG SEQRES 27 A 415 LEU THR THR LEU THR ARG ASP ILE TRP GLN LEU GLN LEU SEQRES 28 A 415 ARG MET SER ARG ARG GLN GLY LYS ARG ALA TRP LYS LEU SEQRES 29 A 415 LEU GLU HIS PRO LYS PHE ARG ALA ALA TYR ASP LEU LEU SEQRES 30 A 415 ALA LEU ARG ALA GLU VAL GLU ARG ASN ALA GLU LEU GLN SEQRES 31 A 415 ARG LEU VAL LYS TRP TRP GLY GLU PHE GLN VAL SER ALA SEQRES 32 A 415 PRO PRO ASP GLN LYS GLY MET LEU ASN GLU LEU ASP SEQRES 1 B 415 GLN VAL THR VAL ILE PRO ARG GLU GLN HIS ALA ILE SER SEQRES 2 B 415 ARG LYS ASP ILE SER GLU ASN ALA LEU LYS VAL MET TYR SEQRES 3 B 415 ARG LEU ASN LYS ALA GLY TYR GLU ALA TRP LEU VAL GLY SEQRES 4 B 415 GLY GLY VAL ARG ASP LEU LEU LEU GLY LYS LYS PRO LYS SEQRES 5 B 415 ASP PHE ASP VAL THR THR ASN ALA THR PRO GLU GLN VAL SEQRES 6 B 415 ARG LYS LEU PHE ARG ASN CYS ARG LEU VAL GLY ARG ARG SEQRES 7 B 415 PHE ARG LEU ALA HIS VAL MET PHE GLY PRO GLU ILE ILE SEQRES 8 B 415 GLU VAL ALA THR PHE ARG GLY HIS HIS GLU GLY ASN VAL SEQRES 9 B 415 SER ASP ARG THR THR SER GLN ARG GLY GLN ASN GLY MET SEQRES 10 B 415 LEU LEU ARG ASP ASN ILE PHE GLY SER ILE GLU GLU ASP SEQRES 11 B 415 ALA GLN ARG ARG ASP PHE THR ILE ASN SER LEU TYR TYR SEQRES 12 B 415 SER VAL ALA ASP PHE THR VAL ARG ASP TYR VAL GLY GLY SEQRES 13 B 415 MET LYS ASP LEU LYS ASP GLY VAL ILE ARG LEU ILE GLY SEQRES 14 B 415 ASN PRO GLU THR ARG TYR ARG GLU ASP PRO VAL ARG MET SEQRES 15 B 415 LEU ARG ALA VAL ARG PHE ALA ALA LYS LEU GLY MET ARG SEQRES 16 B 415 ILE SER PRO GLU THR ALA GLU PRO ILE PRO ARG LEU ALA SEQRES 17 B 415 THR LEU LEU ASN ASP ILE PRO PRO ALA HIS LEU PHE GLU SEQRES 18 B 415 GLU SER LEU LYS LEU LEU GLN ALA GLY TYR GLY TYR GLU SEQRES 19 B 415 THR TYR LYS LEU LEU CYS GLU TYR HIS LEU PHE GLN PRO SEQRES 20 B 415 LEU PHE PRO THR ILE THR ARG TYR PHE THR GLU ASN GLY SEQRES 21 B 415 ASP SER PRO MET GLU ARG ILE ILE GLU GLN VAL LEU LYS SEQRES 22 B 415 ASN THR ASP THR ARG ILE HIS ASN ASP MET ARG VAL ASN SEQRES 23 B 415 PRO ALA PHE LEU PHE ALA ALA MET PHE TRP TYR PRO LEU SEQRES 24 B 415 LEU GLU THR ALA GLN LYS ILE ALA GLN GLU SER GLY LEU SEQRES 25 B 415 THR TYR HIS ASP ALA PHE ALA LEU ALA MET ASN ASP VAL SEQRES 26 B 415 LEU ASP GLU ALA CYS ARG SER LEU ALA ILE PRO LYS ARG SEQRES 27 B 415 LEU THR THR LEU THR ARG ASP ILE TRP GLN LEU GLN LEU SEQRES 28 B 415 ARG MET SER ARG ARG GLN GLY LYS ARG ALA TRP LYS LEU SEQRES 29 B 415 LEU GLU HIS PRO LYS PHE ARG ALA ALA TYR ASP LEU LEU SEQRES 30 B 415 ALA LEU ARG ALA GLU VAL GLU ARG ASN ALA GLU LEU GLN SEQRES 31 B 415 ARG LEU VAL LYS TRP TRP GLY GLU PHE GLN VAL SER ALA SEQRES 32 B 415 PRO PRO ASP GLN LYS GLY MET LEU ASN GLU LEU ASP HET ATP A 501 31 HET MG A 600 1 HET ATP B 502 31 HET MG B 601 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *6(H2 O) HELIX 1 1 ARG A 30 SER A 34 5 5 HELIX 2 2 ALA A 37 ALA A 47 1 11 HELIX 3 3 GLY A 55 GLY A 64 1 10 HELIX 4 4 THR A 77 LEU A 84 1 8 HELIX 5 5 SER A 142 ALA A 147 1 6 HELIX 6 6 THR A 153 ASN A 155 5 3 HELIX 7 7 GLY A 172 GLY A 179 1 8 HELIX 8 8 ASN A 186 ASP A 194 1 9 HELIX 9 9 VAL A 196 LEU A 208 1 13 HELIX 10 10 SER A 213 GLU A 218 1 6 HELIX 11 11 GLU A 218 ALA A 224 1 7 HELIX 12 12 THR A 225 ILE A 230 5 6 HELIX 13 13 PRO A 231 GLN A 244 1 14 HELIX 14 14 TYR A 247 TYR A 258 1 12 HELIX 15 15 LEU A 260 PHE A 265 1 6 HELIX 16 16 PHE A 265 ARG A 270 1 6 HELIX 17 17 SER A 278 ASN A 297 1 20 HELIX 18 18 ASN A 302 PHE A 311 1 10 HELIX 19 19 PHE A 311 SER A 326 1 16 HELIX 20 20 THR A 329 LEU A 349 1 21 HELIX 21 21 PRO A 352 MET A 369 1 18 HELIX 22 22 ARG A 376 HIS A 383 1 8 HELIX 23 23 LYS A 385 GLU A 400 1 16 HELIX 24 24 ASN A 402 PHE A 415 1 14 HELIX 25 25 ALA A 419 LEU A 427 1 9 HELIX 26 26 ARG B 30 GLU B 35 5 6 HELIX 27 27 ALA B 37 ALA B 47 1 11 HELIX 28 28 GLY B 55 GLY B 64 1 10 HELIX 29 29 THR B 77 LEU B 84 1 8 HELIX 30 30 SER B 142 ARG B 149 1 8 HELIX 31 31 THR B 153 SER B 156 5 4 HELIX 32 32 GLY B 172 GLY B 179 1 8 HELIX 33 33 ASN B 186 ASP B 194 1 9 HELIX 34 34 PRO B 195 LEU B 208 1 14 HELIX 35 35 SER B 213 GLU B 218 1 6 HELIX 36 36 PRO B 219 ALA B 224 1 6 HELIX 37 37 THR B 225 ILE B 230 5 6 HELIX 38 38 PRO B 231 LEU B 243 1 13 HELIX 39 39 TYR B 247 GLU B 257 1 11 HELIX 40 40 LEU B 260 PHE B 265 1 6 HELIX 41 41 PHE B 265 ARG B 270 1 6 HELIX 42 42 SER B 278 ASN B 297 1 20 HELIX 43 43 ASN B 302 PHE B 311 1 10 HELIX 44 44 PHE B 311 GLU B 325 1 15 HELIX 45 45 THR B 329 CYS B 346 1 18 HELIX 46 46 PRO B 352 ARG B 371 1 20 HELIX 47 47 LYS B 375 HIS B 383 1 9 HELIX 48 48 LYS B 385 ARG B 401 1 17 HELIX 49 49 ASN B 402 PHE B 415 1 14 HELIX 50 50 ALA B 419 MET B 426 1 8 SHEET 1 A 8 VAL A 20 ILE A 21 0 SHEET 2 A 8 VAL A 166 ASP A 168 -1 O VAL A 166 N ILE A 21 SHEET 3 A 8 LEU A 157 TYR A 159 -1 N TYR A 158 O ARG A 167 SHEET 4 A 8 ALA A 51 VAL A 54 -1 N LEU A 53 O TYR A 159 SHEET 5 A 8 ASP A 71 THR A 74 -1 O THR A 73 N TRP A 52 SHEET 6 A 8 ILE A 106 THR A 111 1 O GLU A 108 N VAL A 72 SHEET 7 A 8 ALA A 98 MET A 101 -1 N ALA A 98 O VAL A 109 SHEET 8 A 8 LEU A 90 VAL A 91 -1 N VAL A 91 O HIS A 99 SHEET 1 B 2 VAL A 180 ILE A 181 0 SHEET 2 B 2 ARG A 211 ILE A 212 1 O ARG A 211 N ILE A 181 SHEET 1 C 7 VAL B 20 ILE B 21 0 SHEET 2 C 7 VAL B 166 ARG B 167 -1 O VAL B 166 N ILE B 21 SHEET 3 C 7 TYR B 158 TYR B 159 -1 N TYR B 158 O ARG B 167 SHEET 4 C 7 TRP B 52 VAL B 54 -1 N LEU B 53 O TYR B 159 SHEET 5 C 7 ASP B 71 THR B 74 -1 O THR B 73 N TRP B 52 SHEET 6 C 7 ILE B 106 THR B 111 1 O GLU B 108 N VAL B 72 SHEET 7 C 7 ALA B 98 MET B 101 -1 N ALA B 98 O VAL B 109 SHEET 1 D 2 VAL B 180 ILE B 181 0 SHEET 2 D 2 ARG B 211 ILE B 212 1 O ARG B 211 N ILE B 181 LINK OE1 GLU A 108 MG MG A 600 1555 1555 2.68 LINK OE2 GLU A 108 MG MG A 600 1555 1555 2.71 LINK O1A ATP A 501 MG MG A 600 1555 1555 2.78 LINK O5' ATP B 502 MG MG B 601 1555 1555 2.95 SITE 1 AC1 9 GLY A 56 ARG A 59 ARG A 149 ARG A 150 SITE 2 AC1 9 ASP A 151 ASN A 155 ARG A 197 PHE A 204 SITE 3 AC1 9 MG A 600 SITE 1 AC2 3 ASP A 71 GLU A 108 ATP A 501 SITE 1 AC3 9 GLY B 56 ARG B 59 ARG B 149 ARG B 150 SITE 2 AC3 9 ASP B 151 ASN B 155 ARG B 197 PHE B 204 SITE 3 AC3 9 MG B 601 SITE 1 AC4 1 ATP B 502 CRYST1 132.400 132.400 176.291 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005672 0.00000