HEADER TRANSFERASE 10-DEC-10 3ASA TITLE CRYSTAL STRUCTURE OF APO-LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM TITLE 2 CHLAMYDIA TRACHOMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LL-DIAMINOPIMELATE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DAP-AT, DAP-AMINOTRANSFERASE, LL-DAP-AMINOTRANSFERASE; COMPND 5 EC: 2.6.1.83; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDIA TRACHOMATIS; SOURCE 3 ORGANISM_TAXID: 813; SOURCE 4 GENE: DAPL, ASPC, CT_390; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLP DEPENDENT AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.WATANABE,M.N.JAMES REVDAT 2 13-MAR-24 3ASA 1 SEQADV REVDAT 1 31-AUG-11 3ASA 0 JRNL AUTH N.WATANABE,M.D.CLAY,M.J.VAN BELKUM,C.FAN,J.C.VEDERAS, JRNL AUTH 2 M.N.JAMES JRNL TITL THE STRUCTURE OF LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM JRNL TITL 2 CHLAMYDIA TRACHOMATIS: IMPLICATIONS FOR ITS BROAD SUBSTRATE JRNL TITL 3 SPECIFICITY. JRNL REF J.MOL.BIOL. V. 411 649 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21722650 JRNL DOI 10.1016/J.JMB.2011.06.023 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0055 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2735 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3062 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3143 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4271 ; 1.433 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 7.116 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;33.955 ;23.490 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;19.036 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.634 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2438 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1938 ; 0.851 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3127 ; 1.591 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1205 ; 1.879 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1144 ; 3.151 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ASA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000029633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978483 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40054 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 97.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.87600 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG6000, 2.0M NACL, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 55.12300 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.81300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.40650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.12300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 154.21950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 154.21950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.12300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.40650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 55.12300 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 102.81300 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.12300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 102.81300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.12300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 154.21950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 51.40650 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.12300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 51.40650 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 154.21950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.12300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.12300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 102.81300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 55.12300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -51.40650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 522 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 389 REMARK 465 PRO A 390 REMARK 465 ALA A 391 REMARK 465 LEU A 392 REMARK 465 GLN A 393 REMARK 465 SER A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 514 O HOH A 568 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 11 -20.90 -147.16 REMARK 500 LYS A 12 -109.54 33.10 REMARK 500 ASN A 13 -74.62 -153.50 REMARK 500 ASP A 42 105.49 18.14 REMARK 500 THR A 43 -121.17 -84.89 REMARK 500 THR A 44 -29.96 50.19 REMARK 500 THR A 66 -50.31 -128.39 REMARK 500 THR A 67 77.60 176.06 REMARK 500 CYS A 68 -5.33 170.84 REMARK 500 ARG A 69 128.01 -32.30 REMARK 500 TYR A 71 1.46 -56.73 REMARK 500 PRO A 73 157.34 -23.73 REMARK 500 ASP A 74 -62.28 75.57 REMARK 500 ASP A 161 74.16 14.18 REMARK 500 CYS A 227 4.79 -151.54 REMARK 500 GLN A 294 -86.71 -47.88 REMARK 500 LEU A 295 94.24 29.46 REMARK 500 PRO A 332 -72.36 -48.98 REMARK 500 THR A 333 56.58 77.01 REMARK 500 GLN A 334 -59.85 -142.97 REMARK 500 ASN A 336 61.15 26.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 40 GLY A 41 138.40 REMARK 500 GLY A 41 ASP A 42 -137.60 REMARK 500 PRO A 73 ASP A 74 37.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ASB RELATED DB: PDB DBREF 3ASA A 1 394 UNP O84395 DAPAT_CHLTR 1 394 SEQADV 3ASA HIS A 395 UNP O84395 EXPRESSION TAG SEQADV 3ASA HIS A 396 UNP O84395 EXPRESSION TAG SEQADV 3ASA HIS A 397 UNP O84395 EXPRESSION TAG SEQADV 3ASA HIS A 398 UNP O84395 EXPRESSION TAG SEQADV 3ASA HIS A 399 UNP O84395 EXPRESSION TAG SEQADV 3ASA HIS A 400 UNP O84395 EXPRESSION TAG SEQRES 1 A 400 MET LYS ARG ASN PRO HIS PHE VAL SER LEU THR LYS ASN SEQRES 2 A 400 TYR LEU PHE ALA ASP LEU GLN LYS ARG VAL ALA GLN PHE SEQRES 3 A 400 ARG LEU GLU ASN PRO GLN HIS THR VAL ILE ASN LEU SER SEQRES 4 A 400 ILE GLY ASP THR THR GLN PRO LEU ASN ALA SER VAL ALA SEQRES 5 A 400 GLU ALA PHE ALA SER SER ILE ALA ARG LEU SER SER PRO SEQRES 6 A 400 THR THR CYS ARG GLY TYR GLY PRO ASP PHE GLY LEU PRO SEQRES 7 A 400 ALA LEU ARG GLN LYS LEU SER GLU ASP PHE TYR ARG GLY SEQRES 8 A 400 PHE VAL ASP ALA LYS GLU ILE PHE ILE SER ASP GLY ALA SEQRES 9 A 400 LYS VAL ASP LEU PHE ARG LEU LEU SER PHE PHE GLY PRO SEQRES 10 A 400 ASN GLN THR VAL ALA ILE GLN ASP PRO SER TYR PRO ALA SEQRES 11 A 400 TYR LEU ASP ILE ALA ARG LEU THR GLY ALA LYS GLU ILE SEQRES 12 A 400 ILE ALA LEU PRO CYS LEU GLN GLU ASN ALA PHE PHE PRO SEQRES 13 A 400 GLU PHE PRO GLU ASP THR HIS ILE ASP ILE LEU CYS LEU SEQRES 14 A 400 CYS SER PRO ASN ASN PRO THR GLY THR VAL LEU ASN LYS SEQRES 15 A 400 ASP GLN LEU ARG ALA ILE VAL HIS TYR ALA ILE GLU HIS SEQRES 16 A 400 GLU ILE LEU ILE LEU PHE ASP ALA ALA TYR SER THR PHE SEQRES 17 A 400 ILE SER ASP PRO SER LEU PRO LYS SER ILE PHE GLU ILE SEQRES 18 A 400 PRO ASP ALA ARG PHE CYS ALA ILE GLU ILE ASN SER PHE SEQRES 19 A 400 SER LYS PRO LEU GLY PHE ALA GLY ILE ARG LEU GLY TRP SEQRES 20 A 400 THR VAL ILE PRO GLN GLU LEU THR TYR ALA ASP GLY HIS SEQRES 21 A 400 PHE VAL ILE GLN ASP TRP GLU ARG PHE LEU SER THR THR SEQRES 22 A 400 PHE ASN GLY ALA SER ILE PRO ALA GLN GLU ALA GLY VAL SEQRES 23 A 400 ALA GLY LEU SER ILE LEU PRO GLN LEU GLU ALA ILE HIS SEQRES 24 A 400 TYR TYR ARG GLU ASN SER ASP LEU LEU ARG LYS ALA LEU SEQRES 25 A 400 LEU ALA THR GLY PHE GLU VAL PHE GLY GLY GLU HIS ALA SEQRES 26 A 400 PRO TYR LEU TRP VAL LYS PRO THR GLN ALA ASN ILE SER SEQRES 27 A 400 ASP ARG ASP LEU PHE ASP PHE PHE LEU ARG GLU TYR HIS SEQRES 28 A 400 ILE ALA ILE THR PRO GLY ILE GLY PHE GLY ARG SER GLY SEQRES 29 A 400 SER GLY PHE VAL ARG PHE SER SER LEU GLY LYS ARG GLU SEQRES 30 A 400 ASP ILE LEU ALA ALA CYS GLU ARG LEU GLN MET ALA PRO SEQRES 31 A 400 ALA LEU GLN SER HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *215(H2 O) HELIX 1 1 ASN A 4 SER A 9 1 6 HELIX 2 2 TYR A 14 ASN A 30 1 17 HELIX 3 3 ASN A 48 SER A 63 1 16 HELIX 4 4 LEU A 77 ASP A 87 1 11 HELIX 5 5 ASP A 94 LYS A 96 5 3 HELIX 6 6 GLY A 103 GLY A 116 1 14 HELIX 7 7 TYR A 128 THR A 138 1 11 HELIX 8 8 LEU A 149 ALA A 153 5 5 HELIX 9 9 ASN A 181 HIS A 195 1 15 HELIX 10 10 TYR A 205 ILE A 209 5 5 HELIX 11 11 SER A 217 ILE A 221 5 5 HELIX 12 12 ASP A 223 PHE A 226 5 4 HELIX 13 13 SER A 235 GLY A 239 5 5 HELIX 14 14 PHE A 261 PHE A 274 1 14 HELIX 15 15 SER A 278 LEU A 292 1 15 HELIX 16 16 LEU A 295 THR A 315 1 21 HELIX 17 17 ASP A 341 HIS A 351 1 11 HELIX 18 18 ILE A 358 SER A 365 5 8 HELIX 19 19 LYS A 375 MET A 388 1 14 SHEET 1 A 2 ILE A 36 ASN A 37 0 SHEET 2 A 2 ILE A 352 ALA A 353 1 O ALA A 353 N ILE A 36 SHEET 1 B 7 ILE A 98 SER A 101 0 SHEET 2 B 7 GLY A 246 VAL A 249 -1 O GLY A 246 N SER A 101 SHEET 3 B 7 ALA A 228 SER A 233 -1 N GLU A 230 O VAL A 249 SHEET 4 B 7 LEU A 198 ASP A 202 1 N PHE A 201 O ILE A 229 SHEET 5 B 7 ILE A 166 CYS A 170 1 N LEU A 169 O ASP A 202 SHEET 6 B 7 THR A 120 ASP A 125 1 N ALA A 122 O CYS A 168 SHEET 7 B 7 GLU A 142 PRO A 147 1 O LEU A 146 N ASP A 125 SHEET 1 C 4 GLU A 318 GLY A 321 0 SHEET 2 C 4 TYR A 327 LYS A 331 -1 O LYS A 331 N GLU A 318 SHEET 3 C 4 VAL A 368 SER A 371 -1 O PHE A 370 N LEU A 328 SHEET 4 C 4 THR A 355 PRO A 356 -1 N THR A 355 O ARG A 369 CISPEP 1 ASN A 13 TYR A 14 0 6.19 CISPEP 2 THR A 66 THR A 67 0 -21.65 CISPEP 3 THR A 67 CYS A 68 0 3.79 CISPEP 4 ARG A 69 GLY A 70 0 2.72 CISPEP 5 GLY A 72 PRO A 73 0 -6.48 CISPEP 6 ASP A 125 PRO A 126 0 12.12 CISPEP 7 SER A 171 PRO A 172 0 -4.93 CISPEP 8 ASN A 174 PRO A 175 0 13.33 CISPEP 9 THR A 333 GLN A 334 0 -5.45 CRYST1 110.246 110.246 205.626 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009071 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004863 0.00000