HEADER TRANSFERASE 10-DEC-10 3ASB TITLE CRYSTAL STRUCTURE OF PLP-BOUND LL-DIAMINOPIMELATE AMINOTRANSFERASE TITLE 2 FROM CHLAMYDIA TRACHOMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LL-DIAMINOPIMELATE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LL-DAP-AMINOTRANSFERASE; COMPND 5 EC: 2.6.1.83; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDIA TRACHOMATIS; SOURCE 3 ORGANISM_TAXID: 813; SOURCE 4 GENE: DAPL, ASPC, CT_390; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLP DEPENDENT AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.WATANABE,M.N.JAMES REVDAT 2 15-APR-20 3ASB 1 COMPND SOURCE REMARK SEQADV REVDAT 2 2 1 SEQRES LINK ATOM REVDAT 1 31-AUG-11 3ASB 0 JRNL AUTH N.WATANABE,M.D.CLAY,M.J.VAN BELKUM,C.FAN,J.C.VEDERAS, JRNL AUTH 2 M.N.JAMES JRNL TITL THE STRUCTURE OF LL-DIAMINOPIMELATE AMINOTRANSFERASE FROM JRNL TITL 2 CHLAMYDIA TRACHOMATIS: IMPLICATIONS FOR ITS BROAD SUBSTRATE JRNL TITL 3 SPECIFICITY. JRNL REF J.MOL.BIOL. V. 411 649 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21722650 JRNL DOI 10.1016/J.JMB.2011.06.023 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0055 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 16706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 900 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1198 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.4550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2887 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : 2.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.331 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.238 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.614 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2960 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4014 ; 2.087 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 8.161 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;36.706 ;23.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 462 ;22.438 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.632 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2278 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1814 ; 1.013 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2915 ; 1.934 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1146 ; 2.656 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1099 ; 4.437 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ASB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000029634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17651 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 35.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67500 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG6000, 2.0M NACL, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.24300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 55.24300 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.12100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.24300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.06050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.24300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 153.18150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.24300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 153.18150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.24300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.06050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 55.24300 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.24300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 102.12100 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.24300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.24300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 102.12100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.24300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 153.18150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.24300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 51.06050 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.24300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 51.06050 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.24300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 153.18150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.24300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.24300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 102.12100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 55.24300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.06050 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 419 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 11 REMARK 465 LYS A 12 REMARK 465 ASN A 13 REMARK 465 TYR A 14 REMARK 465 LEU A 15 REMARK 465 HIS A 33 REMARK 465 THR A 34 REMARK 465 ASP A 42 REMARK 465 THR A 43 REMARK 465 THR A 44 REMARK 465 GLN A 45 REMARK 465 THR A 67 REMARK 465 CYS A 68 REMARK 465 ARG A 69 REMARK 465 GLY A 70 REMARK 465 TYR A 71 REMARK 465 GLY A 72 REMARK 465 PRO A 73 REMARK 465 THR A 333 REMARK 465 GLN A 334 REMARK 465 ALA A 335 REMARK 465 ASN A 336 REMARK 465 ILE A 337 REMARK 465 SER A 338 REMARK 465 ALA A 389 REMARK 465 PRO A 390 REMARK 465 ALA A 391 REMARK 465 LEU A 392 REMARK 465 GLN A 393 REMARK 465 SER A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 32 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 6 -7.15 -54.21 REMARK 500 VAL A 8 38.86 -85.39 REMARK 500 SER A 9 32.68 -144.39 REMARK 500 ASP A 18 -55.85 85.11 REMARK 500 ARG A 22 1.41 -69.91 REMARK 500 LEU A 28 3.31 -67.45 REMARK 500 PRO A 31 -8.15 -52.36 REMARK 500 ILE A 40 -176.07 -174.43 REMARK 500 SER A 63 26.81 -79.68 REMARK 500 PHE A 114 -44.75 -29.69 REMARK 500 ASP A 223 -5.78 88.09 REMARK 500 CYS A 227 23.62 -148.22 REMARK 500 PHE A 234 -82.04 -78.51 REMARK 500 SER A 235 -66.01 26.88 REMARK 500 LLP A 236 53.88 -104.47 REMARK 500 LEU A 238 -149.51 -99.18 REMARK 500 GLN A 294 -83.69 -156.72 REMARK 500 LEU A 295 93.91 9.19 REMARK 500 ALA A 297 0.88 -51.55 REMARK 500 PRO A 326 35.97 -88.65 REMARK 500 ARG A 340 -1.70 -56.99 REMARK 500 ILE A 358 -10.22 -49.58 REMARK 500 SER A 365 123.58 -38.23 REMARK 500 ARG A 385 37.24 -55.74 REMARK 500 LEU A 386 39.02 -147.13 REMARK 500 GLN A 387 -97.94 -120.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 427 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 429 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH A 430 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 435 DISTANCE = 7.85 ANGSTROMS REMARK 525 HOH A 436 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH A 440 DISTANCE = 10.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LLP A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ASA RELATED DB: PDB DBREF 3ASB A 1 394 UNP O84395 DAPAT_CHLTR 1 394 SEQADV 3ASB HIS A 395 UNP O84395 EXPRESSION TAG SEQADV 3ASB HIS A 396 UNP O84395 EXPRESSION TAG SEQADV 3ASB HIS A 397 UNP O84395 EXPRESSION TAG SEQADV 3ASB HIS A 398 UNP O84395 EXPRESSION TAG SEQADV 3ASB HIS A 399 UNP O84395 EXPRESSION TAG SEQADV 3ASB HIS A 400 UNP O84395 EXPRESSION TAG SEQRES 1 A 400 MET LYS ARG ASN PRO HIS PHE VAL SER LEU THR LYS ASN SEQRES 2 A 400 TYR LEU PHE ALA ASP LEU GLN LYS ARG VAL ALA GLN PHE SEQRES 3 A 400 ARG LEU GLU ASN PRO GLN HIS THR VAL ILE ASN LEU SER SEQRES 4 A 400 ILE GLY ASP THR THR GLN PRO LEU ASN ALA SER VAL ALA SEQRES 5 A 400 GLU ALA PHE ALA SER SER ILE ALA ARG LEU SER SER PRO SEQRES 6 A 400 THR THR CYS ARG GLY TYR GLY PRO ASP PHE GLY LEU PRO SEQRES 7 A 400 ALA LEU ARG GLN LYS LEU SER GLU ASP PHE TYR ARG GLY SEQRES 8 A 400 PHE VAL ASP ALA LYS GLU ILE PHE ILE SER ASP GLY ALA SEQRES 9 A 400 LYS VAL ASP LEU PHE ARG LEU LEU SER PHE PHE GLY PRO SEQRES 10 A 400 ASN GLN THR VAL ALA ILE GLN ASP PRO SER TYR PRO ALA SEQRES 11 A 400 TYR LEU ASP ILE ALA ARG LEU THR GLY ALA LYS GLU ILE SEQRES 12 A 400 ILE ALA LEU PRO CYS LEU GLN GLU ASN ALA PHE PHE PRO SEQRES 13 A 400 GLU PHE PRO GLU ASP THR HIS ILE ASP ILE LEU CYS LEU SEQRES 14 A 400 CYS SER PRO ASN ASN PRO THR GLY THR VAL LEU ASN LYS SEQRES 15 A 400 ASP GLN LEU ARG ALA ILE VAL HIS TYR ALA ILE GLU HIS SEQRES 16 A 400 GLU ILE LEU ILE LEU PHE ASP ALA ALA TYR SER THR PHE SEQRES 17 A 400 ILE SER ASP PRO SER LEU PRO LYS SER ILE PHE GLU ILE SEQRES 18 A 400 PRO ASP ALA ARG PHE CYS ALA ILE GLU ILE ASN SER PHE SEQRES 19 A 400 SER LLP PRO LEU GLY PHE ALA GLY ILE ARG LEU GLY TRP SEQRES 20 A 400 THR VAL ILE PRO GLN GLU LEU THR TYR ALA ASP GLY HIS SEQRES 21 A 400 PHE VAL ILE GLN ASP TRP GLU ARG PHE LEU SER THR THR SEQRES 22 A 400 PHE ASN GLY ALA SER ILE PRO ALA GLN GLU ALA GLY VAL SEQRES 23 A 400 ALA GLY LEU SER ILE LEU PRO GLN LEU GLU ALA ILE HIS SEQRES 24 A 400 TYR TYR ARG GLU ASN SER ASP LEU LEU ARG LYS ALA LEU SEQRES 25 A 400 LEU ALA THR GLY PHE GLU VAL PHE GLY GLY GLU HIS ALA SEQRES 26 A 400 PRO TYR LEU TRP VAL LYS PRO THR GLN ALA ASN ILE SER SEQRES 27 A 400 ASP ARG ASP LEU PHE ASP PHE PHE LEU ARG GLU TYR HIS SEQRES 28 A 400 ILE ALA ILE THR PRO GLY ILE GLY PHE GLY ARG SER GLY SEQRES 29 A 400 SER GLY PHE VAL ARG PHE SER SER LEU GLY LYS ARG GLU SEQRES 30 A 400 ASP ILE LEU ALA ALA CYS GLU ARG LEU GLN MET ALA PRO SEQRES 31 A 400 ALA LEU GLN SER HIS HIS HIS HIS HIS HIS MODRES 3ASB LLP A 236 LYS MODIFIED RESIDUE HET LLP A 236 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 HOH *39(H2 O) HELIX 1 1 ASN A 4 VAL A 8 5 5 HELIX 2 2 GLN A 20 LEU A 28 1 9 HELIX 3 3 ASN A 48 SER A 63 1 16 HELIX 4 4 LEU A 77 PHE A 88 1 12 HELIX 5 5 ASP A 94 LYS A 96 5 3 HELIX 6 6 GLY A 103 PHE A 115 1 13 HELIX 7 7 TYR A 128 GLY A 139 1 12 HELIX 8 8 LEU A 149 ALA A 153 5 5 HELIX 9 9 ASN A 181 HIS A 195 1 15 HELIX 10 10 TYR A 205 ILE A 209 5 5 HELIX 11 11 SER A 217 ILE A 221 5 5 HELIX 12 12 ASP A 223 PHE A 226 5 4 HELIX 13 13 PHE A 261 PHE A 274 1 14 HELIX 14 14 SER A 278 LEU A 292 1 15 HELIX 15 15 LEU A 295 THR A 315 1 21 HELIX 16 16 ARG A 340 HIS A 351 1 12 HELIX 17 17 ILE A 358 PHE A 360 5 3 HELIX 18 18 GLY A 361 SER A 365 5 5 HELIX 19 19 LYS A 375 ARG A 385 1 11 SHEET 1 A 2 ILE A 36 ASN A 37 0 SHEET 2 A 2 ILE A 352 ALA A 353 1 O ALA A 353 N ILE A 36 SHEET 1 B 7 ILE A 98 SER A 101 0 SHEET 2 B 7 GLY A 246 VAL A 249 -1 O THR A 248 N PHE A 99 SHEET 3 B 7 ALA A 228 SER A 233 -1 N GLU A 230 O VAL A 249 SHEET 4 B 7 LEU A 198 ASP A 202 1 N ILE A 199 O ILE A 229 SHEET 5 B 7 ILE A 166 CYS A 170 1 N LEU A 167 O LEU A 200 SHEET 6 B 7 THR A 120 ASP A 125 1 N ALA A 122 O CYS A 168 SHEET 7 B 7 GLU A 142 PRO A 147 1 O LEU A 146 N ASP A 125 SHEET 1 C 4 GLU A 318 GLY A 321 0 SHEET 2 C 4 TYR A 327 LYS A 331 -1 O TRP A 329 N PHE A 320 SHEET 3 C 4 VAL A 368 SER A 371 -1 O VAL A 368 N VAL A 330 SHEET 4 C 4 THR A 355 PRO A 356 -1 N THR A 355 O ARG A 369 LINK C SER A 235 N LLP A 236 1555 1555 1.34 LINK N PRO A 237 C LLP A 236 1555 1555 1.36 CISPEP 1 PHE A 16 ALA A 17 0 -0.24 CISPEP 2 ALA A 17 ASP A 18 0 10.03 CISPEP 3 ASP A 125 PRO A 126 0 4.76 CISPEP 4 GLU A 160 ASP A 161 0 -16.33 CISPEP 5 SER A 171 PRO A 172 0 -5.75 CISPEP 6 ASN A 174 PRO A 175 0 25.31 CISPEP 7 PRO A 237 LEU A 238 0 -12.65 SITE 1 AC1 15 GLY A 103 ALA A 104 LYS A 105 TYR A 128 SITE 2 AC1 15 CYS A 170 ASN A 174 ASP A 202 TYR A 205 SITE 3 AC1 15 PHE A 208 SER A 233 PHE A 234 SER A 235 SITE 4 AC1 15 PRO A 237 LEU A 238 ASN A 275 CRYST1 110.486 110.486 204.242 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009051 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004896 0.00000