HEADER LIGASE/DNA BINDING PROTEIN 16-DEC-10 3ASL TITLE STRUCTURE OF UHRF1 IN COMPLEX WITH HISTONE TAIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHD FINGER DOMAIN; COMPND 5 EC: 6.3.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.3; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES IN UNP 2-12; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UHRF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS HISTONE READER MODULE, EPIGENETIC REGULATION, HISTONE H3, LIGASE-DNA KEYWDS 2 BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.ARITA,K.SUGITA,M.UNOKI,R.HAMAMOTO,N.SEKIYAMA,H.TOCHIO,M.ARIYOSHI, AUTHOR 2 M.SHIRAKAWA REVDAT 4 13-MAR-24 3ASL 1 REMARK LINK REVDAT 3 05-JUN-13 3ASL 1 JRNL REVDAT 2 15-AUG-12 3ASL 1 JRNL REVDAT 1 25-JAN-12 3ASL 0 JRNL AUTH K.ARITA,S.ISOGAI,T.ODA,M.UNOKI,K.SUGITA,N.SEKIYAMA,K.KUWATA, JRNL AUTH 2 R.HAMAMOTO,H.TOCHIO,M.SATO,M.ARIYOSHI,M.SHIRAKAWA JRNL TITL RECOGNITION OF MODIFICATION STATUS ON A HISTONE H3 TAIL BY JRNL TITL 2 LINKED HISTONE READER MODULES OF THE EPIGENETIC REGULATOR JRNL TITL 3 UHRF1 JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 12950 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22837395 JRNL DOI 10.1073/PNAS.1203701109 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 13317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 702 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 856 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.1670 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.1820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.917 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 628 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 461 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 837 ; 1.512 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1115 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 75 ; 5.550 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 31 ;30.248 ;23.871 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 108 ;11.245 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;23.990 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 85 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 684 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 117 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 386 ; 1.239 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 149 ; 0.374 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 621 ; 1.913 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 242 ; 3.104 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 216 ; 4.341 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1089 ; 1.176 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 299 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6161 5.0809 -4.4428 REMARK 3 T TENSOR REMARK 3 T11: 0.1630 T22: 0.0884 REMARK 3 T33: 0.0861 T12: -0.0591 REMARK 3 T13: -0.0034 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 10.2775 L22: 8.0260 REMARK 3 L33: 13.1448 L12: -6.5767 REMARK 3 L13: -0.2578 L23: 1.1835 REMARK 3 S TENSOR REMARK 3 S11: 0.1879 S12: -0.3118 S13: -0.7173 REMARK 3 S21: 0.2959 S22: 0.0181 S23: 0.4645 REMARK 3 S31: 1.0213 S32: -0.3201 S33: -0.2060 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 305 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1521 6.9578 -12.7044 REMARK 3 T TENSOR REMARK 3 T11: 0.0892 T22: 0.1031 REMARK 3 T33: 0.0669 T12: -0.0285 REMARK 3 T13: 0.0129 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.3544 L22: 8.9009 REMARK 3 L33: 11.9230 L12: 3.1211 REMARK 3 L13: -2.3173 L23: -1.6552 REMARK 3 S TENSOR REMARK 3 S11: -0.1449 S12: 0.0883 S13: 0.0051 REMARK 3 S21: -0.1410 S22: 0.1541 S23: 0.0217 REMARK 3 S31: 0.5669 S32: -0.1997 S33: -0.0092 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 311 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7552 14.9403 -9.6025 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.1041 REMARK 3 T33: 0.0813 T12: 0.0120 REMARK 3 T13: 0.0082 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 3.9102 L22: 2.1558 REMARK 3 L33: 13.4497 L12: 1.5266 REMARK 3 L13: 2.6204 L23: 0.9786 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -0.0387 S13: 0.2396 REMARK 3 S21: 0.0111 S22: -0.1066 S23: 0.2242 REMARK 3 S31: -0.1688 S32: -0.6332 S33: 0.1297 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7877 18.5812 -6.4981 REMARK 3 T TENSOR REMARK 3 T11: 0.0623 T22: 0.1054 REMARK 3 T33: 0.0785 T12: -0.0226 REMARK 3 T13: 0.0359 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.2106 L22: 3.8339 REMARK 3 L33: 7.6273 L12: 2.1429 REMARK 3 L13: -2.3005 L23: 0.7755 REMARK 3 S TENSOR REMARK 3 S11: 0.1161 S12: -0.0315 S13: 0.1165 REMARK 3 S21: -0.0694 S22: 0.0416 S23: 0.0719 REMARK 3 S31: -0.3139 S32: 0.0262 S33: -0.1577 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 322 A 327 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5106 13.8244 -11.8972 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.0873 REMARK 3 T33: 0.0683 T12: -0.0041 REMARK 3 T13: 0.0129 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 3.2012 L22: 0.5962 REMARK 3 L33: 3.4918 L12: 0.3528 REMARK 3 L13: 0.3375 L23: 1.2875 REMARK 3 S TENSOR REMARK 3 S11: 0.1076 S12: 0.1854 S13: 0.0264 REMARK 3 S21: 0.0497 S22: 0.0462 S23: -0.0401 REMARK 3 S31: 0.1143 S32: 0.0167 S33: -0.1538 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 328 A 332 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8151 16.3400 -5.3290 REMARK 3 T TENSOR REMARK 3 T11: 0.0734 T22: 0.0939 REMARK 3 T33: 0.0868 T12: -0.0024 REMARK 3 T13: 0.0094 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 3.4295 L22: 3.0691 REMARK 3 L33: 8.2159 L12: -1.9074 REMARK 3 L13: -0.5793 L23: 2.7132 REMARK 3 S TENSOR REMARK 3 S11: 0.0987 S12: 0.0569 S13: 0.0922 REMARK 3 S21: 0.0478 S22: 0.0012 S23: -0.1561 REMARK 3 S31: 0.1557 S32: 0.1247 S33: -0.1000 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 333 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4579 17.6068 4.9347 REMARK 3 T TENSOR REMARK 3 T11: 0.2368 T22: 0.1300 REMARK 3 T33: 0.1124 T12: -0.1032 REMARK 3 T13: 0.0075 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 11.3672 L22: 5.4146 REMARK 3 L33: 9.8475 L12: 0.6878 REMARK 3 L13: 4.8806 L23: 2.9274 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.3316 S13: -0.2808 REMARK 3 S21: 0.3923 S22: 0.0734 S23: 0.1887 REMARK 3 S31: 0.3404 S32: -0.4853 S33: -0.0674 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 339 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8460 22.0256 -7.2026 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.0760 REMARK 3 T33: 0.1122 T12: -0.0171 REMARK 3 T13: 0.0354 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.1873 L22: 2.8674 REMARK 3 L33: 3.0495 L12: 2.4684 REMARK 3 L13: 0.7608 L23: 1.3176 REMARK 3 S TENSOR REMARK 3 S11: -0.0515 S12: 0.0269 S13: 0.2148 REMARK 3 S21: -0.1329 S22: 0.0323 S23: 0.2108 REMARK 3 S31: -0.3716 S32: -0.0328 S33: 0.0192 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 346 A 351 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8647 27.6825 -6.4922 REMARK 3 T TENSOR REMARK 3 T11: 0.1205 T22: 0.0890 REMARK 3 T33: 0.1373 T12: -0.0564 REMARK 3 T13: 0.0018 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 9.0145 L22: 13.3287 REMARK 3 L33: 6.0176 L12: -9.9325 REMARK 3 L13: 0.2081 L23: -1.9039 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: 0.0125 S13: 0.3717 REMARK 3 S21: -0.0364 S22: -0.0079 S23: -0.2922 REMARK 3 S31: -0.5667 S32: 0.2311 S33: 0.0505 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 352 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9954 20.3399 3.5807 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.0922 REMARK 3 T33: 0.1289 T12: -0.0063 REMARK 3 T13: -0.0179 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 6.9250 L22: 8.0103 REMARK 3 L33: 14.6387 L12: -0.9552 REMARK 3 L13: -3.3947 L23: 3.1016 REMARK 3 S TENSOR REMARK 3 S11: -0.2401 S12: -0.1708 S13: -0.1154 REMARK 3 S21: 0.5175 S22: 0.0394 S23: -0.0725 REMARK 3 S31: -0.0318 S32: 0.1556 S33: 0.2008 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 358 A 366 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0767 26.2117 4.7952 REMARK 3 T TENSOR REMARK 3 T11: 0.1231 T22: 0.1116 REMARK 3 T33: 0.1152 T12: -0.0259 REMARK 3 T13: 0.0054 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 9.4354 L22: 8.1776 REMARK 3 L33: 4.8147 L12: 1.2365 REMARK 3 L13: 1.0641 L23: 2.8358 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: 0.0152 S13: 0.3887 REMARK 3 S21: 0.4705 S22: -0.1271 S23: -0.0267 REMARK 3 S31: -0.0826 S32: -0.2942 S33: 0.0576 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 9 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1145 10.3716 -5.1104 REMARK 3 T TENSOR REMARK 3 T11: 0.0271 T22: 0.0488 REMARK 3 T33: 0.0283 T12: 0.0101 REMARK 3 T13: 0.0026 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.6995 L22: 5.0857 REMARK 3 L33: 4.6894 L12: -1.3128 REMARK 3 L13: 1.4491 L23: 1.4951 REMARK 3 S TENSOR REMARK 3 S11: 0.1637 S12: 0.0287 S13: 0.0368 REMARK 3 S21: -0.2606 S22: -0.0815 S23: -0.0132 REMARK 3 S31: 0.0781 S32: 0.2596 S33: -0.0822 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ASL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000029644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-08; 22-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A; BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28221; 1 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM SODIUM CITRATE, 42% PEGMME2000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.60500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.06850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.60500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.06850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 298 REMARK 465 ALA A 367 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 317 -155.54 -119.72 REMARK 500 GLU A 335 -64.16 -102.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 302 SG REMARK 620 2 CYS A 305 SG 107.1 REMARK 620 3 CYS A 313 SG 114.6 112.9 REMARK 620 4 CYS A 316 SG 111.5 100.8 109.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 321 SG 109.0 REMARK 620 3 HIS A 341 ND1 99.7 99.4 REMARK 620 4 CYS A 344 SG 122.5 112.7 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 333 SG REMARK 620 2 CYS A 336 SG 105.6 REMARK 620 3 CYS A 360 SG 109.4 114.5 REMARK 620 4 CYS A 363 SG 109.1 110.8 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 319 NE2 REMARK 620 2 GLU A 362 OE1 102.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FL2 RELATED DB: PDB REMARK 900 RELATED ID: 3DB3 RELATED DB: PDB REMARK 900 RELATED ID: 2ZKD RELATED DB: PDB REMARK 900 RELATED ID: 2ZO0 RELATED DB: PDB REMARK 900 RELATED ID: 3CLZ RELATED DB: PDB REMARK 900 RELATED ID: 2FAZ RELATED DB: PDB REMARK 900 RELATED ID: 3ASK RELATED DB: PDB DBREF 3ASL A 298 367 UNP Q96T88 UHRF1_HUMAN 298 367 DBREF 3ASL B 1 11 UNP P84243 H33_HUMAN 2 12 SEQRES 1 A 70 SER GLY PRO SER CYS LYS HIS CYS LYS ASP ASP VAL ASN SEQRES 2 A 70 ARG LEU CYS ARG VAL CYS ALA CYS HIS LEU CYS GLY GLY SEQRES 3 A 70 ARG GLN ASP PRO ASP LYS GLN LEU MET CYS ASP GLU CYS SEQRES 4 A 70 ASP MET ALA PHE HIS ILE TYR CYS LEU ASP PRO PRO LEU SEQRES 5 A 70 SER SER VAL PRO SER GLU ASP GLU TRP TYR CYS PRO GLU SEQRES 6 A 70 CYS ARG ASN ASP ALA SEQRES 1 B 11 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR HET ZN A 1 1 HET ZN A 2 1 HET ZN A 3 1 HET ZN A 4 1 HET EDO A 368 4 HET EDO A 369 4 HET EDO A 370 4 HET EDO B 12 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 4(ZN 2+) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 11 HOH *72(H2 O) HELIX 1 1 ASP A 326 ASP A 328 5 3 HELIX 2 2 TYR A 343 LEU A 345 5 3 SHEET 1 A 2 GLN A 330 MET A 332 0 SHEET 2 A 2 ALA A 339 HIS A 341 -1 O PHE A 340 N LEU A 331 LINK ZN ZN A 1 SG CYS A 302 1555 1555 2.34 LINK ZN ZN A 1 SG CYS A 305 1555 1555 2.36 LINK ZN ZN A 1 SG CYS A 313 1555 1555 2.31 LINK ZN ZN A 1 SG CYS A 316 1555 1555 2.31 LINK ZN ZN A 2 SG CYS A 318 1555 1555 2.33 LINK ZN ZN A 2 SG CYS A 321 1555 1555 2.36 LINK ZN ZN A 2 ND1 HIS A 341 1555 1555 2.12 LINK ZN ZN A 2 SG CYS A 344 1555 1555 2.30 LINK ZN ZN A 3 SG CYS A 333 1555 1555 2.36 LINK ZN ZN A 3 SG CYS A 336 1555 1555 2.34 LINK ZN ZN A 3 SG CYS A 360 1555 1555 2.30 LINK ZN ZN A 3 SG CYS A 363 1555 1555 2.33 LINK ZN ZN A 4 NE2 HIS A 319 1555 1555 1.97 LINK ZN ZN A 4 OE1 GLU A 362 1555 1555 2.39 CISPEP 1 ASP A 346 PRO A 347 0 -1.47 SITE 1 AC1 4 CYS A 302 CYS A 305 CYS A 313 CYS A 316 SITE 1 AC2 4 CYS A 318 CYS A 321 HIS A 341 CYS A 344 SITE 1 AC3 4 CYS A 333 CYS A 336 CYS A 360 CYS A 363 SITE 1 AC4 2 HIS A 319 GLU A 362 SITE 1 AC5 3 HOH A 15 CYS A 305 ARG A 311 SITE 1 AC6 4 HOH A 6 HOH A 15 LEU A 312 HOH A 371 SITE 1 AC7 8 HOH A 58 HOH A 63 LEU A 312 GLY A 323 SITE 2 AC7 8 ARG A 324 GLN A 325 HIS A 341 TYR A 343 SITE 1 AC8 5 PRO A 347 ARG A 364 ALA B 1 THR B 3 SITE 2 AC8 5 HOH B 52 CRYST1 67.210 36.137 34.175 90.00 110.69 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014879 0.000000 0.005620 0.00000 SCALE2 0.000000 0.027672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.031279 0.00000