HEADER VIRAL PROTEIN 17-DEC-10 3ASP TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS FUNABASHI258 STAIN IN THE TITLE 2 COMPLEX WITH A-ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 221-541; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK-LIKE VIRUS; SOURCE 3 ORGANISM_TAXID: 95340; SOURCE 4 STRAIN: GI/2 FUNABASHI 258; SOURCE 5 GENE: CAPSID, ORF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS PROTEIN-SUGAR COMPLEX, HISTO-BLOOD GROUP ANTIGEN, CAPSID PROTEIN, KEYWDS 2 LECTIN-LIKE PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.KUBOTA,A.KUMAGAI,H.ITOH,S.FURUKAWA,H.NARIMATSU,T.WAKITA,K.ISHII, AUTHOR 2 N.TAKEDA,Y.SOMEYA,H.SHIRATO REVDAT 5 13-MAR-24 3ASP 1 HETSYN REVDAT 4 05-AUG-20 3ASP 1 REMARK REVDAT 3 29-JUL-20 3ASP 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 20-NOV-13 3ASP 1 JRNL REVDAT 1 25-JAN-12 3ASP 0 JRNL AUTH T.KUBOTA,A.KUMAGAI,H.ITO,S.FURUKAWA,Y.SOMEYA,N.TAKEDA, JRNL AUTH 2 K.ISHII,T.WAKITA,H.NARIMATSU,H.SHIRATO JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF LEWIS ANTIGENS BY JRNL TITL 2 GENOGROUP I NOROVIRUS JRNL REF J.VIROL. V. 86 11138 2012 JRNL REFN ISSN 0022-538X JRNL PMID 22855491 JRNL DOI 10.1128/JVI.00278-12 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 87885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4406 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6132 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 324 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.393 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4973 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6827 ; 1.077 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 619 ; 5.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 217 ;35.593 ;24.562 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 697 ;11.463 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.371 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 764 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3886 ; 0.004 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3084 ; 0.529 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5028 ; 1.000 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1889 ; 1.303 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1795 ; 2.242 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 3ASP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000029648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87885 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.68700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, HEXANEDIOL, PH 4.6, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.66533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.33067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 216 REMARK 465 PRO A 217 REMARK 465 LEU A 218 REMARK 465 GLY A 219 REMARK 465 SER A 220 REMARK 465 VAL A 221 REMARK 465 PRO A 222 REMARK 465 PRO A 223 REMARK 465 SER A 535 REMARK 465 THR A 536 REMARK 465 ALA A 537 REMARK 465 ARG A 538 REMARK 465 SER A 539 REMARK 465 ARG A 540 REMARK 465 LEU A 541 REMARK 465 GLY B 216 REMARK 465 PRO B 217 REMARK 465 LEU B 218 REMARK 465 GLY B 219 REMARK 465 SER B 220 REMARK 465 VAL B 221 REMARK 465 PRO B 222 REMARK 465 PRO B 223 REMARK 465 THR B 224 REMARK 465 ILE B 225 REMARK 465 GLU B 226 REMARK 465 GLN B 227 REMARK 465 LYS B 228 REMARK 465 THR B 229 REMARK 465 GLY B 532 REMARK 465 THR B 533 REMARK 465 ALA B 534 REMARK 465 SER B 535 REMARK 465 THR B 536 REMARK 465 ALA B 537 REMARK 465 ARG B 538 REMARK 465 SER B 539 REMARK 465 ARG B 540 REMARK 465 LEU B 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 265 43.42 -146.22 REMARK 500 PHE A 315 -7.74 67.80 REMARK 500 ASN A 374 59.32 -90.55 REMARK 500 GLN B 265 45.59 -145.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 360 O REMARK 620 2 ASP A 405 O 87.1 REMARK 620 3 GLY A 407 O 108.3 99.2 REMARK 620 4 HOH A2372 O 93.1 86.2 158.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 360 O REMARK 620 2 ASP B 405 O 89.8 REMARK 620 3 GLY B 407 O 103.5 98.8 REMARK 620 4 HOH B2392 O 95.1 94.8 156.8 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ASQ RELATED DB: PDB REMARK 900 RELATED ID: 3ASR RELATED DB: PDB REMARK 900 RELATED ID: 3ASS RELATED DB: PDB REMARK 900 RELATED ID: 3AST RELATED DB: PDB DBREF 3ASP A 221 541 UNP Q8JW44 Q8JW44_9CALI 221 541 DBREF 3ASP B 221 541 UNP Q8JW44 Q8JW44_9CALI 221 541 SEQADV 3ASP GLY A 216 UNP Q8JW44 EXPRESSION TAG SEQADV 3ASP PRO A 217 UNP Q8JW44 EXPRESSION TAG SEQADV 3ASP LEU A 218 UNP Q8JW44 EXPRESSION TAG SEQADV 3ASP GLY A 219 UNP Q8JW44 EXPRESSION TAG SEQADV 3ASP SER A 220 UNP Q8JW44 EXPRESSION TAG SEQADV 3ASP GLY B 216 UNP Q8JW44 EXPRESSION TAG SEQADV 3ASP PRO B 217 UNP Q8JW44 EXPRESSION TAG SEQADV 3ASP LEU B 218 UNP Q8JW44 EXPRESSION TAG SEQADV 3ASP GLY B 219 UNP Q8JW44 EXPRESSION TAG SEQADV 3ASP SER B 220 UNP Q8JW44 EXPRESSION TAG SEQRES 1 A 326 GLY PRO LEU GLY SER VAL PRO PRO THR ILE GLU GLN LYS SEQRES 2 A 326 THR ARG ALA PHE THR VAL PRO ASN ILE PRO LEU GLN THR SEQRES 3 A 326 LEU SER ASN SER ARG PHE PRO SER LEU ILE GLN GLY MET SEQRES 4 A 326 ILE LEU SER PRO ASP ALA SER GLN VAL VAL GLN PHE GLN SEQRES 5 A 326 ASN GLY ARG CYS LEU ILE ASP GLY GLN LEU LEU GLY THR SEQRES 6 A 326 THR PRO ALA THR SER GLY GLN LEU PHE ARG VAL ARG GLY SEQRES 7 A 326 LYS ILE ASN GLN GLY ALA ARG THR LEU ASN LEU THR GLU SEQRES 8 A 326 VAL ASP GLY LYS PRO PHE MET ALA PHE ASP SER PRO ALA SEQRES 9 A 326 PRO VAL GLY PHE PRO ASP PHE GLY LYS CYS ASP TRP HIS SEQRES 10 A 326 MET ARG ILE SER LYS THR PRO ASN ASN THR SER SER GLY SEQRES 11 A 326 ASP PRO MET ARG SER VAL SER VAL GLN THR ASN VAL GLN SEQRES 12 A 326 GLY PHE VAL PRO HIS LEU GLY SER ILE GLN PHE ASP GLU SEQRES 13 A 326 VAL PHE ASN HIS PRO THR GLY ASP TYR ILE GLY THR ILE SEQRES 14 A 326 GLU TRP ILE SER GLN PRO SER THR PRO PRO GLY THR ASP SEQRES 15 A 326 ILE ASN LEU TRP GLU ILE PRO ASP TYR GLY SER SER LEU SEQRES 16 A 326 SER GLN ALA ALA ASN LEU ALA PRO PRO VAL PHE PRO PRO SEQRES 17 A 326 GLY PHE GLY GLU ALA LEU VAL TYR PHE VAL SER ALA PHE SEQRES 18 A 326 PRO GLY PRO ASN ASN ARG SER ALA PRO ASN ASP VAL PRO SEQRES 19 A 326 CYS LEU LEU PRO GLN GLU TYR ILE THR HIS PHE VAL SER SEQRES 20 A 326 GLU GLN ALA PRO THR MET GLY ASP ALA ALA LEU LEU HIS SEQRES 21 A 326 TYR VAL ASP PRO ASP THR ASN ARG ASN LEU GLY GLU PHE SEQRES 22 A 326 LYS LEU TYR PRO GLY GLY TYR LEU THR CYS VAL PRO ASN SEQRES 23 A 326 GLY VAL GLY ALA GLY PRO GLN GLN LEU PRO LEU ASN GLY SEQRES 24 A 326 VAL PHE LEU PHE VAL SER TRP VAL SER ARG PHE TYR GLN SEQRES 25 A 326 LEU LYS PRO VAL GLY THR ALA SER THR ALA ARG SER ARG SEQRES 26 A 326 LEU SEQRES 1 B 326 GLY PRO LEU GLY SER VAL PRO PRO THR ILE GLU GLN LYS SEQRES 2 B 326 THR ARG ALA PHE THR VAL PRO ASN ILE PRO LEU GLN THR SEQRES 3 B 326 LEU SER ASN SER ARG PHE PRO SER LEU ILE GLN GLY MET SEQRES 4 B 326 ILE LEU SER PRO ASP ALA SER GLN VAL VAL GLN PHE GLN SEQRES 5 B 326 ASN GLY ARG CYS LEU ILE ASP GLY GLN LEU LEU GLY THR SEQRES 6 B 326 THR PRO ALA THR SER GLY GLN LEU PHE ARG VAL ARG GLY SEQRES 7 B 326 LYS ILE ASN GLN GLY ALA ARG THR LEU ASN LEU THR GLU SEQRES 8 B 326 VAL ASP GLY LYS PRO PHE MET ALA PHE ASP SER PRO ALA SEQRES 9 B 326 PRO VAL GLY PHE PRO ASP PHE GLY LYS CYS ASP TRP HIS SEQRES 10 B 326 MET ARG ILE SER LYS THR PRO ASN ASN THR SER SER GLY SEQRES 11 B 326 ASP PRO MET ARG SER VAL SER VAL GLN THR ASN VAL GLN SEQRES 12 B 326 GLY PHE VAL PRO HIS LEU GLY SER ILE GLN PHE ASP GLU SEQRES 13 B 326 VAL PHE ASN HIS PRO THR GLY ASP TYR ILE GLY THR ILE SEQRES 14 B 326 GLU TRP ILE SER GLN PRO SER THR PRO PRO GLY THR ASP SEQRES 15 B 326 ILE ASN LEU TRP GLU ILE PRO ASP TYR GLY SER SER LEU SEQRES 16 B 326 SER GLN ALA ALA ASN LEU ALA PRO PRO VAL PHE PRO PRO SEQRES 17 B 326 GLY PHE GLY GLU ALA LEU VAL TYR PHE VAL SER ALA PHE SEQRES 18 B 326 PRO GLY PRO ASN ASN ARG SER ALA PRO ASN ASP VAL PRO SEQRES 19 B 326 CYS LEU LEU PRO GLN GLU TYR ILE THR HIS PHE VAL SER SEQRES 20 B 326 GLU GLN ALA PRO THR MET GLY ASP ALA ALA LEU LEU HIS SEQRES 21 B 326 TYR VAL ASP PRO ASP THR ASN ARG ASN LEU GLY GLU PHE SEQRES 22 B 326 LYS LEU TYR PRO GLY GLY TYR LEU THR CYS VAL PRO ASN SEQRES 23 B 326 GLY VAL GLY ALA GLY PRO GLN GLN LEU PRO LEU ASN GLY SEQRES 24 B 326 VAL PHE LEU PHE VAL SER TRP VAL SER ARG PHE TYR GLN SEQRES 25 B 326 LEU LYS PRO VAL GLY THR ALA SER THR ALA ARG SER ARG SEQRES 26 B 326 LEU HET NAG C 1 15 HET GAL C 2 11 HET FUC C 3 10 HET A2G C 4 14 HET NAG D 1 15 HET GAL D 2 11 HET FUC D 3 10 HET A2G D 4 14 HET NA A 701 1 HET NA B 701 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 3 A2G 2(C8 H15 N O6) FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *407(H2 O) HELIX 1 1 THR A 224 ARG A 230 1 7 HELIX 2 2 PRO A 238 LEU A 242 5 5 HELIX 3 3 THR A 284 LEU A 288 5 5 HELIX 4 4 VAL A 361 LEU A 364 5 4 HELIX 5 5 PRO A 453 GLN A 464 1 12 HELIX 6 6 GLY A 506 LEU A 510 5 5 HELIX 7 7 PRO B 238 LEU B 242 5 5 HELIX 8 8 VAL B 361 LEU B 364 5 4 HELIX 9 9 PRO B 453 GLN B 464 1 12 HELIX 10 10 GLY B 506 LEU B 510 5 5 SHEET 1 A 3 GLY A 253 ILE A 255 0 SHEET 2 A 3 TYR A 431 PHE A 436 -1 O TYR A 431 N ILE A 255 SHEET 3 A 3 ASN A 446 CYS A 450 -1 O VAL A 448 N SER A 434 SHEET 1 B 6 ARG A 349 GLN A 354 0 SHEET 2 B 6 ASP A 330 LYS A 337 -1 N TRP A 331 O VAL A 353 SHEET 3 B 6 GLY A 378 SER A 388 -1 O GLU A 385 N HIS A 332 SHEET 4 B 6 VAL A 291 ILE A 295 -1 N GLY A 293 O TYR A 380 SHEET 5 B 6 THR A 301 THR A 305 -1 O ASN A 303 N LYS A 294 SHEET 6 B 6 SER A 366 GLN A 368 -1 O ILE A 367 N LEU A 302 SHEET 1 C 5 ALA A 428 LEU A 429 0 SHEET 2 C 5 TYR A 495 CYS A 498 -1 O CYS A 498 N ALA A 428 SHEET 3 C 5 ASN A 484 TYR A 491 -1 N TYR A 491 O TYR A 495 SHEET 4 C 5 ALA A 471 VAL A 477 -1 N ALA A 472 O LEU A 490 SHEET 5 C 5 VAL A 515 VAL A 522 -1 O VAL A 515 N VAL A 477 SHEET 1 D 3 GLY B 253 ILE B 255 0 SHEET 2 D 3 ALA B 428 PHE B 436 -1 O TYR B 431 N ILE B 255 SHEET 3 D 3 ASN B 446 CYS B 450 -1 O VAL B 448 N SER B 434 SHEET 1 E 6 GLY B 253 ILE B 255 0 SHEET 2 E 6 ALA B 428 PHE B 436 -1 O TYR B 431 N ILE B 255 SHEET 3 E 6 TYR B 495 CYS B 498 -1 O LEU B 496 N VAL B 430 SHEET 4 E 6 ASN B 484 TYR B 491 -1 N TYR B 491 O TYR B 495 SHEET 5 E 6 ALA B 471 VAL B 477 -1 N TYR B 476 O LEU B 485 SHEET 6 E 6 VAL B 515 VAL B 522 -1 O SER B 520 N LEU B 473 SHEET 1 F 6 ARG B 349 GLN B 354 0 SHEET 2 F 6 ASP B 330 LYS B 337 -1 N TRP B 331 O VAL B 353 SHEET 3 F 6 GLY B 378 SER B 388 -1 O SER B 388 N ASP B 330 SHEET 4 F 6 VAL B 291 ILE B 295 -1 N GLY B 293 O TYR B 380 SHEET 5 F 6 THR B 301 THR B 305 -1 O ASN B 303 N LYS B 294 SHEET 6 F 6 SER B 366 GLN B 368 -1 O ILE B 367 N LEU B 302 LINK O3 NAG C 1 C1 GAL C 2 1555 1555 1.44 LINK O2 GAL C 2 C1 FUC C 3 1555 1555 1.45 LINK O3 GAL C 2 C1 A2G C 4 1555 1555 1.44 LINK O3 NAG D 1 C1 GAL D 2 1555 1555 1.44 LINK O2 GAL D 2 C1 FUC D 3 1555 1555 1.45 LINK O3 GAL D 2 C1 A2G D 4 1555 1555 1.44 LINK O PHE A 360 NA NA A 701 1555 1555 2.43 LINK O ASP A 405 NA NA A 701 1555 1555 2.84 LINK O GLY A 407 NA NA A 701 1555 1555 2.41 LINK NA NA A 701 O HOH A2372 1555 1555 2.34 LINK O PHE B 360 NA NA B 701 1555 1555 2.31 LINK O ASP B 405 NA NA B 701 1555 1555 2.63 LINK O GLY B 407 NA NA B 701 1555 1555 2.43 LINK NA NA B 701 O HOH B2392 1555 1555 2.36 CISPEP 1 THR A 338 PRO A 339 0 -1.86 CISPEP 2 THR A 392 PRO A 393 0 -6.58 CISPEP 3 THR B 338 PRO B 339 0 -3.60 CISPEP 4 THR B 392 PRO B 393 0 -7.89 CRYST1 74.624 74.624 106.996 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013401 0.007737 0.000000 0.00000 SCALE2 0.000000 0.015474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009346 0.00000