HEADER OXIDOREDUCTASE 12-JAN-11 3ATR TITLE GERANYLGERANYL REDUCTASE (GGR) FROM SULFOLOBUS ACIDOCALDARIUS CO- TITLE 2 CRYSTALLIZED WITH ITS LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED ARCHAEAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GERANYLGERANYL REDUCTASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 3 ORGANISM_TAXID: 2285; SOURCE 4 GENE: SACI_0986; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS SATURATING DOUBLE BONDS, ARCHAEAL MEMBRANE PRECURSOR, LIKE 2,3-DI-O- KEYWDS 2 GERANYLGERANYLGLYCERYL PHOSPHATE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FUJIHASHI,D.SASAKI,Y.IWATA,T.YOSHIMURA,H.HEMMI,K.MIKI REVDAT 2 25-DEC-13 3ATR 1 JRNL VERSN REVDAT 1 04-MAY-11 3ATR 0 JRNL AUTH D.SASAKI,M.FUJIHASHI,Y.IWATA,M.MURAKAMI,T.YOSHIMURA,H.HEMMI, JRNL AUTH 2 K.MIKI JRNL TITL STRUCTURE AND MUTATION ANALYSIS OF ARCHAEAL GERANYLGERANYL JRNL TITL 2 REDUCTASE JRNL REF J.MOL.BIOL. V. 409 543 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21515284 JRNL DOI 10.1016/J.JMB.2011.04.002 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 46938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2671 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3569 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 2.31000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.861 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3819 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5186 ; 1.658 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 5.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;35.849 ;24.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 674 ;15.849 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;22.484 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 548 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2876 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2298 ; 0.915 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3706 ; 1.632 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1521 ; 2.804 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1476 ; 4.541 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1177 24.3975 8.9932 REMARK 3 T TENSOR REMARK 3 T11: 0.0160 T22: 0.0183 REMARK 3 T33: 0.0492 T12: 0.0056 REMARK 3 T13: -0.0074 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.9621 L22: 0.5688 REMARK 3 L33: 1.6277 L12: -0.3130 REMARK 3 L13: -0.4579 L23: 0.3294 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.0150 S13: 0.1208 REMARK 3 S21: 0.0153 S22: 0.0024 S23: -0.0775 REMARK 3 S31: -0.1240 S32: -0.0389 S33: -0.0427 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 241 A 370 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2339 15.0481 14.7658 REMARK 3 T TENSOR REMARK 3 T11: 0.0705 T22: 0.0613 REMARK 3 T33: 0.0497 T12: 0.0012 REMARK 3 T13: -0.0014 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.5837 L22: 0.1195 REMARK 3 L33: 0.8584 L12: -0.0335 REMARK 3 L13: -0.1219 L23: 0.1252 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: -0.0726 S13: -0.0169 REMARK 3 S21: 0.0444 S22: 0.0209 S23: -0.0230 REMARK 3 S31: 0.0271 S32: 0.0250 S33: 0.0134 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 371 A 407 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8376 5.3673 33.2907 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.2159 REMARK 3 T33: 0.1547 T12: -0.0489 REMARK 3 T13: 0.0473 T23: 0.1345 REMARK 3 L TENSOR REMARK 3 L11: 3.6957 L22: 1.8225 REMARK 3 L33: 9.1200 L12: 1.1051 REMARK 3 L13: -3.0296 L23: -1.3570 REMARK 3 S TENSOR REMARK 3 S11: 0.4108 S12: -0.0620 S13: 0.2005 REMARK 3 S21: -0.0243 S22: -0.2696 S23: -0.2165 REMARK 3 S31: -0.7208 S32: 0.7811 S33: -0.1412 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 408 A 452 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3988 -2.2303 14.2248 REMARK 3 T TENSOR REMARK 3 T11: 0.2206 T22: 0.0130 REMARK 3 T33: 0.1599 T12: 0.0395 REMARK 3 T13: 0.0603 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.2076 L22: 0.5158 REMARK 3 L33: 12.2509 L12: -0.0530 REMARK 3 L13: -3.2546 L23: 0.5589 REMARK 3 S TENSOR REMARK 3 S11: -0.3663 S12: -0.1045 S13: -0.5092 REMARK 3 S21: 0.0675 S22: 0.0332 S23: 0.0480 REMARK 3 S31: 1.2386 S32: 0.1669 S33: 0.3331 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6446 23.3461 8.5715 REMARK 3 T TENSOR REMARK 3 T11: 0.0796 T22: 0.0995 REMARK 3 T33: 0.0877 T12: 0.0092 REMARK 3 T13: 0.0091 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.2515 L22: 0.5523 REMARK 3 L33: 5.5164 L12: 0.3259 REMARK 3 L13: -1.2803 L23: 1.0683 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: -0.0195 S13: 0.1197 REMARK 3 S21: 0.0440 S22: -0.0744 S23: 0.0844 REMARK 3 S31: 0.0787 S32: -0.2056 S33: 0.0359 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ATR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-11. REMARK 100 THE RCSB ID CODE IS RCSB029683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5-4.5M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE BUFFER, PH 4.6, TEMPERATURE 293K, LIQUID DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.49200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.91850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.02700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.91850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.49200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.02700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 340 O31 PPV A 511 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 161 50.82 36.66 REMARK 500 ASP A 207 114.15 -173.87 REMARK 500 SER A 211 63.91 -152.62 REMARK 500 ALA A 253 59.70 -141.34 REMARK 500 TYR A 340 -32.67 -165.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DD9 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV A 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ATQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN DBREF 3ATR A 1 452 UNP Q4JA33 Q4JA33_SULAC 1 452 SEQADV 3ATR HIS A 0 UNP Q4JA33 EXPRESSION TAG SEQRES 1 A 453 HIS MET LYS GLU LEU LYS TYR ASP VAL LEU ILE ILE GLY SEQRES 2 A 453 GLY GLY PHE ALA GLY SER SER ALA ALA TYR GLN LEU SER SEQRES 3 A 453 ARG ARG GLY LEU LYS ILE LEU LEU VAL ASP SER LYS PRO SEQRES 4 A 453 TRP ASN ARG ILE GLY ASP LYS PRO CYS GLY ASP ALA VAL SEQRES 5 A 453 SER LYS ALA HIS PHE ASP LYS LEU GLY MET PRO TYR PRO SEQRES 6 A 453 LYS GLY GLU GLU LEU GLU ASN LYS ILE ASN GLY ILE LYS SEQRES 7 A 453 LEU TYR SER PRO ASP MET GLN THR VAL TRP THR VAL ASN SEQRES 8 A 453 GLY GLU GLY PHE GLU LEU ASN ALA PRO LEU TYR ASN GLN SEQRES 9 A 453 ARG VAL LEU LYS GLU ALA GLN ASP ARG GLY VAL GLU ILE SEQRES 10 A 453 TRP ASP LEU THR THR ALA MET LYS PRO ILE PHE GLU ASP SEQRES 11 A 453 GLY TYR VAL LYS GLY ALA VAL LEU PHE ASN ARG ARG THR SEQRES 12 A 453 ASN GLU GLU LEU THR VAL TYR SER LYS VAL VAL VAL GLU SEQRES 13 A 453 ALA THR GLY TYR SER ARG SER PHE ARG SER LYS LEU PRO SEQRES 14 A 453 PRO GLU LEU PRO ILE THR GLU ASP LEU ASP ASP LYS ASP SEQRES 15 A 453 ALA ASP VAL ALA TYR ARG GLU VAL LEU LEU THR LYS GLU SEQRES 16 A 453 ASP ILE GLU ASP HIS ASP TYR LEU ARG ILE PHE ILE ASP SEQRES 17 A 453 GLN GLU THR SER PRO GLY GLY TYR TRP TRP TYR PHE PRO SEQRES 18 A 453 LYS GLY LYS ASN LYS VAL ASN VAL GLY LEU GLY ILE GLN SEQRES 19 A 453 GLY GLY MET GLY TYR PRO SER ILE HIS GLU TYR TYR LYS SEQRES 20 A 453 LYS TYR LEU ASP LYS TYR ALA PRO ASP VAL ASP LYS SER SEQRES 21 A 453 LYS LEU LEU VAL LYS GLY GLY ALA LEU VAL PRO THR ARG SEQRES 22 A 453 ARG PRO LEU TYR THR MET ALA TRP ASN GLY ILE ILE VAL SEQRES 23 A 453 ILE GLY ASP SER GLY PHE THR VAL ASN PRO VAL HIS GLY SEQRES 24 A 453 GLY GLY LYS GLY SER ALA MET ILE SER GLY TYR CYS ALA SEQRES 25 A 453 ALA LYS ALA ILE LEU SER ALA PHE GLU THR GLY ASP PHE SEQRES 26 A 453 SER ALA SER GLY LEU TRP ASP MET ASN ILE CYS TYR VAL SEQRES 27 A 453 ASN GLU TYR GLY ALA LYS GLN ALA SER LEU ASP ILE PHE SEQRES 28 A 453 ARG ARG PHE LEU GLN LYS LEU SER ASN ASP ASP ILE ASN SEQRES 29 A 453 TYR GLY MET LYS LYS LYS ILE ILE LYS GLU GLU ASP LEU SEQRES 30 A 453 LEU GLU ALA SER GLU LYS GLY ASP LEU HIS LEU SER VAL SEQRES 31 A 453 ALA ASP LYS ALA MET ARG VAL ILE SER GLY LEU GLY ARG SEQRES 32 A 453 PRO SER LEU LEU PHE LYS LEU LYS ALA VAL ALA GLU SER SEQRES 33 A 453 MET LYS LYS ILE LYS GLU LEU TYR LEU ASN TYR PRO ARG SEQRES 34 A 453 SER PRO SER SER LEU GLY SER TRP ARG ARG GLU VAL ASP SEQRES 35 A 453 ASN VAL LEU THR GLU PHE ASN LYS SER LEU SER HET FDA A 501 53 HET DD9 A 502 9 HET PPV A 511 9 HETNAM FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE HETNAM DD9 NONANE HETNAM PPV PYROPHOSPHATE FORMUL 2 FDA C27 H35 N9 O15 P2 FORMUL 3 DD9 C9 H20 FORMUL 4 PPV H4 O7 P2 FORMUL 5 HOH *162(H2 O) HELIX 1 1 GLY A 14 SER A 25 1 12 HELIX 2 2 PRO A 38 ILE A 42 5 5 HELIX 3 3 LYS A 53 LEU A 59 1 7 HELIX 4 4 LYS A 65 GLU A 67 5 3 HELIX 5 5 ASN A 97 ARG A 112 1 16 HELIX 6 6 THR A 157 ARG A 161 5 5 HELIX 7 7 PHE A 163 LEU A 167 5 5 HELIX 8 8 LEU A 171 GLU A 175 5 5 HELIX 9 9 ASP A 178 LYS A 180 5 3 HELIX 10 10 SER A 240 ALA A 253 1 14 HELIX 11 11 GLY A 287 PHE A 291 5 5 HELIX 12 12 GLY A 300 THR A 321 1 22 HELIX 13 13 TRP A 330 TYR A 340 1 11 HELIX 14 14 TYR A 340 GLN A 355 1 16 HELIX 15 15 SER A 358 LYS A 368 1 11 HELIX 16 16 LYS A 372 GLY A 383 1 12 HELIX 17 17 HIS A 386 SER A 398 1 13 HELIX 18 18 SER A 404 PHE A 407 5 4 HELIX 19 19 LYS A 408 ASN A 425 1 18 HELIX 20 20 SER A 429 SER A 431 5 3 HELIX 21 21 SER A 432 LEU A 451 1 20 SHEET 1 A 4 LYS A 2 LYS A 5 0 SHEET 2 A 4 GLU A 144 TYR A 149 1 O TYR A 149 N LEU A 4 SHEET 3 A 4 TYR A 131 ASN A 139 -1 N LEU A 137 O LEU A 146 SHEET 4 A 4 THR A 120 GLU A 128 -1 N ILE A 126 O LYS A 133 SHEET 1 B 6 GLU A 115 TRP A 117 0 SHEET 2 B 6 ILE A 31 VAL A 34 1 N LEU A 33 O GLU A 115 SHEET 3 B 6 VAL A 8 ILE A 11 1 N ILE A 10 O LEU A 32 SHEET 4 B 6 VAL A 152 GLU A 155 1 O VAL A 154 N ILE A 11 SHEET 5 B 6 ILE A 283 VAL A 285 1 O ILE A 284 N GLU A 155 SHEET 6 B 6 ALA A 279 TRP A 280 -1 N TRP A 280 O ILE A 283 SHEET 1 C 8 ALA A 50 SER A 52 0 SHEET 2 C 8 VAL A 86 LEU A 96 -1 O PHE A 94 N VAL A 51 SHEET 3 C 8 LEU A 69 TYR A 79 -1 N LEU A 78 O TRP A 87 SHEET 4 C 8 TYR A 201 PHE A 205 1 O LEU A 202 N LYS A 77 SHEET 5 C 8 TRP A 216 GLY A 222 -1 O TRP A 216 N PHE A 205 SHEET 6 C 8 LYS A 225 GLN A 233 -1 O ASN A 227 N PHE A 219 SHEET 7 C 8 ALA A 182 THR A 192 -1 N GLU A 188 O VAL A 228 SHEET 8 C 8 VAL A 256 PRO A 270 -1 O LEU A 262 N VAL A 189 SSBOND 1 CYS A 310 CYS A 335 1555 1555 2.15 SITE 1 AC1 41 ILE A 11 GLY A 12 GLY A 14 PHE A 15 SITE 2 AC1 41 ALA A 16 ASP A 35 SER A 36 LYS A 37 SITE 3 AC1 41 LYS A 45 PRO A 46 CYS A 47 GLY A 48 SITE 4 AC1 41 ASP A 49 ALA A 50 THR A 120 THR A 121 SITE 5 AC1 41 ALA A 122 ALA A 156 THR A 157 GLY A 158 SITE 6 AC1 41 SER A 162 ALA A 185 PHE A 219 ALA A 267 SITE 7 AC1 41 VAL A 269 GLY A 287 ASP A 288 GLY A 298 SITE 8 AC1 41 GLY A 299 GLY A 300 LYS A 301 DD9 A 502 SITE 9 AC1 41 HOH A 601 HOH A 602 HOH A 605 HOH A 612 SITE 10 AC1 41 HOH A 623 HOH A 633 HOH A 634 HOH A 661 SITE 11 AC1 41 HOH A 695 SITE 1 AC2 9 ALA A 50 SER A 52 GLY A 91 GLU A 92 SITE 2 AC2 9 TYR A 215 HIS A 297 GLY A 299 FDA A 501 SITE 3 AC2 9 PPV A 511 SITE 1 AC3 8 SER A 52 HIS A 55 ASN A 294 HIS A 297 SITE 2 AC3 8 TYR A 340 LYS A 343 SER A 380 DD9 A 502 CRYST1 62.984 82.054 105.837 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015877 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009448 0.00000