data_3AU6 # _entry.id 3AU6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3AU6 pdb_00003au6 10.2210/pdb3au6/pdb NDB NA0969 ? ? RCSB RCSB029698 ? ? WWPDB D_1000029698 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-25 2 'Structure model' 1 1 2013-12-25 3 'Structure model' 1 2 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3AU6 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2011-01-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3AU2 'The same protein complexed with Ca-dGTP' unspecified TargetDB ttk003000748.1 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nakane, S.' 1 'Masui, R.' 2 'Kuramitsu, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title ;The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 417 _citation.page_first 179 _citation.page_last 196 _citation.year 2012 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22306405 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2012.01.025 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nakane, S.' 1 ? primary 'Ishikawa, H.' 2 ? primary 'Nakagawa, N.' 3 ? primary 'Kuramitsu, S.' 4 ? primary 'Masui, R.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase beta family (X family)' 64204.480 1 2.7.7.7 ? ? ? 2 polymer syn "5'-D(*CP*AP*GP*TP*AP*TP*(DDG))-3'" 2121.436 1 ? ? ? ? 3 polymer syn "5'-D(*CP*GP*GP*CP*CP*AP*TP*AP*CP*TP*G)-3'" 3334.186 1 ? ? ? ? 4 non-polymer syn "2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE" 491.182 1 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 6 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 7 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 8 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 9 water nat water 18.015 26 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MRNQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKVRK HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPL GAVLSLARSLLEAIRALPGVERAELCGSARRYKDTVGDLDFLVASREGERAVEGFVRLPQVKEVYAKGKERATVFLKNGL QVDLRVVPPESYGAGLQYLTGSKAHSIRLRALAQEKGLKLSEYGVFRGEKRIAGETEEEVYAALGLPWIPPPLREDQGEV EAALEGRLPKLLELPQVKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVGEIRRFN ETHGPPYLLAGAEVDIHPDGTLDYPDWVLRELDLVLVSVHSRFNLPKADQTKRLLKALENPFVHVLAHPTARLLGRRAPI EADWEAVFQKAKEKGVAVEIDGYYDRMDLPDDLARMAYGMGLWISLSTDAHQTDHLRFMELAVGTAQRAWIGPERVLNTL DYEDLLSWLKARRGV ; ;MRNQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKVRK HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPL GAVLSLARSLLEAIRALPGVERAELCGSARRYKDTVGDLDFLVASREGERAVEGFVRLPQVKEVYAKGKERATVFLKNGL QVDLRVVPPESYGAGLQYLTGSKAHSIRLRALAQEKGLKLSEYGVFRGEKRIAGETEEEVYAALGLPWIPPPLREDQGEV EAALEGRLPKLLELPQVKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVGEIRRFN ETHGPPYLLAGAEVDIHPDGTLDYPDWVLRELDLVLVSVHSRFNLPKADQTKRLLKALENPFVHVLAHPTARLLGRRAPI EADWEAVFQKAKEKGVAVEIDGYYDRMDLPDDLARMAYGMGLWISLSTDAHQTDHLRFMELAVGTAQRAWIGPERVLNTL DYEDLLSWLKARRGV ; A ttk003000748.1 2 polydeoxyribonucleotide no yes '(DC)(DA)(DG)(DT)(DA)(DT)(DDG)' CAGTATG P ? 3 polydeoxyribonucleotide no no '(DC)(DG)(DG)(DC)(DC)(DA)(DT)(DA)(DC)(DT)(DG)' CGGCCATACTG T ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 "2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE" DG3 5 'MAGNESIUM ION' MG 6 'ZINC ION' ZN 7 'CHLORIDE ION' CL 8 'SULFATE ION' SO4 9 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 ASN n 1 4 GLN n 1 5 GLU n 1 6 LEU n 1 7 ALA n 1 8 ARG n 1 9 ILE n 1 10 PHE n 1 11 GLU n 1 12 GLU n 1 13 ILE n 1 14 GLY n 1 15 LEU n 1 16 MET n 1 17 SER n 1 18 GLU n 1 19 PHE n 1 20 LEU n 1 21 GLY n 1 22 ASP n 1 23 ASN n 1 24 PRO n 1 25 PHE n 1 26 ARG n 1 27 VAL n 1 28 ARG n 1 29 ALA n 1 30 TYR n 1 31 HIS n 1 32 GLN n 1 33 ALA n 1 34 ALA n 1 35 ARG n 1 36 THR n 1 37 LEU n 1 38 TYR n 1 39 ASP n 1 40 LEU n 1 41 ASP n 1 42 THR n 1 43 PRO n 1 44 ILE n 1 45 GLU n 1 46 GLU n 1 47 ILE n 1 48 ALA n 1 49 GLU n 1 50 LYS n 1 51 GLY n 1 52 LYS n 1 53 GLU n 1 54 ALA n 1 55 LEU n 1 56 MET n 1 57 GLU n 1 58 LEU n 1 59 PRO n 1 60 GLY n 1 61 VAL n 1 62 GLY n 1 63 PRO n 1 64 ASP n 1 65 LEU n 1 66 ALA n 1 67 GLU n 1 68 LYS n 1 69 ILE n 1 70 LEU n 1 71 GLU n 1 72 PHE n 1 73 LEU n 1 74 ARG n 1 75 THR n 1 76 GLY n 1 77 LYS n 1 78 VAL n 1 79 ARG n 1 80 LYS n 1 81 HIS n 1 82 GLU n 1 83 GLU n 1 84 LEU n 1 85 SER n 1 86 ARG n 1 87 LYS n 1 88 VAL n 1 89 PRO n 1 90 ARG n 1 91 GLY n 1 92 VAL n 1 93 LEU n 1 94 GLU n 1 95 VAL n 1 96 MET n 1 97 GLU n 1 98 VAL n 1 99 PRO n 1 100 GLY n 1 101 VAL n 1 102 GLY n 1 103 PRO n 1 104 LYS n 1 105 THR n 1 106 ALA n 1 107 ARG n 1 108 LEU n 1 109 LEU n 1 110 TYR n 1 111 GLU n 1 112 GLY n 1 113 LEU n 1 114 GLY n 1 115 ILE n 1 116 ASP n 1 117 SER n 1 118 LEU n 1 119 GLU n 1 120 LYS n 1 121 LEU n 1 122 LYS n 1 123 ALA n 1 124 ALA n 1 125 LEU n 1 126 ASP n 1 127 ARG n 1 128 GLY n 1 129 ASP n 1 130 LEU n 1 131 THR n 1 132 ARG n 1 133 LEU n 1 134 LYS n 1 135 GLY n 1 136 PHE n 1 137 GLY n 1 138 PRO n 1 139 LYS n 1 140 ARG n 1 141 ALA n 1 142 GLU n 1 143 ARG n 1 144 ILE n 1 145 ARG n 1 146 GLU n 1 147 GLY n 1 148 LEU n 1 149 ALA n 1 150 LEU n 1 151 ALA n 1 152 GLN n 1 153 ALA n 1 154 ALA n 1 155 GLY n 1 156 LYS n 1 157 ARG n 1 158 ARG n 1 159 PRO n 1 160 LEU n 1 161 GLY n 1 162 ALA n 1 163 VAL n 1 164 LEU n 1 165 SER n 1 166 LEU n 1 167 ALA n 1 168 ARG n 1 169 SER n 1 170 LEU n 1 171 LEU n 1 172 GLU n 1 173 ALA n 1 174 ILE n 1 175 ARG n 1 176 ALA n 1 177 LEU n 1 178 PRO n 1 179 GLY n 1 180 VAL n 1 181 GLU n 1 182 ARG n 1 183 ALA n 1 184 GLU n 1 185 LEU n 1 186 CYS n 1 187 GLY n 1 188 SER n 1 189 ALA n 1 190 ARG n 1 191 ARG n 1 192 TYR n 1 193 LYS n 1 194 ASP n 1 195 THR n 1 196 VAL n 1 197 GLY n 1 198 ASP n 1 199 LEU n 1 200 ASP n 1 201 PHE n 1 202 LEU n 1 203 VAL n 1 204 ALA n 1 205 SER n 1 206 ARG n 1 207 GLU n 1 208 GLY n 1 209 GLU n 1 210 ARG n 1 211 ALA n 1 212 VAL n 1 213 GLU n 1 214 GLY n 1 215 PHE n 1 216 VAL n 1 217 ARG n 1 218 LEU n 1 219 PRO n 1 220 GLN n 1 221 VAL n 1 222 LYS n 1 223 GLU n 1 224 VAL n 1 225 TYR n 1 226 ALA n 1 227 LYS n 1 228 GLY n 1 229 LYS n 1 230 GLU n 1 231 ARG n 1 232 ALA n 1 233 THR n 1 234 VAL n 1 235 PHE n 1 236 LEU n 1 237 LYS n 1 238 ASN n 1 239 GLY n 1 240 LEU n 1 241 GLN n 1 242 VAL n 1 243 ASP n 1 244 LEU n 1 245 ARG n 1 246 VAL n 1 247 VAL n 1 248 PRO n 1 249 PRO n 1 250 GLU n 1 251 SER n 1 252 TYR n 1 253 GLY n 1 254 ALA n 1 255 GLY n 1 256 LEU n 1 257 GLN n 1 258 TYR n 1 259 LEU n 1 260 THR n 1 261 GLY n 1 262 SER n 1 263 LYS n 1 264 ALA n 1 265 HIS n 1 266 SER n 1 267 ILE n 1 268 ARG n 1 269 LEU n 1 270 ARG n 1 271 ALA n 1 272 LEU n 1 273 ALA n 1 274 GLN n 1 275 GLU n 1 276 LYS n 1 277 GLY n 1 278 LEU n 1 279 LYS n 1 280 LEU n 1 281 SER n 1 282 GLU n 1 283 TYR n 1 284 GLY n 1 285 VAL n 1 286 PHE n 1 287 ARG n 1 288 GLY n 1 289 GLU n 1 290 LYS n 1 291 ARG n 1 292 ILE n 1 293 ALA n 1 294 GLY n 1 295 GLU n 1 296 THR n 1 297 GLU n 1 298 GLU n 1 299 GLU n 1 300 VAL n 1 301 TYR n 1 302 ALA n 1 303 ALA n 1 304 LEU n 1 305 GLY n 1 306 LEU n 1 307 PRO n 1 308 TRP n 1 309 ILE n 1 310 PRO n 1 311 PRO n 1 312 PRO n 1 313 LEU n 1 314 ARG n 1 315 GLU n 1 316 ASP n 1 317 GLN n 1 318 GLY n 1 319 GLU n 1 320 VAL n 1 321 GLU n 1 322 ALA n 1 323 ALA n 1 324 LEU n 1 325 GLU n 1 326 GLY n 1 327 ARG n 1 328 LEU n 1 329 PRO n 1 330 LYS n 1 331 LEU n 1 332 LEU n 1 333 GLU n 1 334 LEU n 1 335 PRO n 1 336 GLN n 1 337 VAL n 1 338 LYS n 1 339 GLY n 1 340 ASP n 1 341 LEU n 1 342 GLN n 1 343 VAL n 1 344 HIS n 1 345 SER n 1 346 THR n 1 347 TYR n 1 348 SER n 1 349 ASP n 1 350 GLY n 1 351 GLN n 1 352 ASN n 1 353 THR n 1 354 LEU n 1 355 GLU n 1 356 GLU n 1 357 LEU n 1 358 TRP n 1 359 GLU n 1 360 ALA n 1 361 ALA n 1 362 LYS n 1 363 THR n 1 364 MET n 1 365 GLY n 1 366 TYR n 1 367 ARG n 1 368 TYR n 1 369 LEU n 1 370 ALA n 1 371 VAL n 1 372 THR n 1 373 ASP n 1 374 HIS n 1 375 SER n 1 376 PRO n 1 377 ALA n 1 378 VAL n 1 379 ARG n 1 380 VAL n 1 381 ALA n 1 382 GLY n 1 383 GLY n 1 384 PRO n 1 385 SER n 1 386 PRO n 1 387 GLU n 1 388 GLU n 1 389 ALA n 1 390 LEU n 1 391 LYS n 1 392 ARG n 1 393 VAL n 1 394 GLY n 1 395 GLU n 1 396 ILE n 1 397 ARG n 1 398 ARG n 1 399 PHE n 1 400 ASN n 1 401 GLU n 1 402 THR n 1 403 HIS n 1 404 GLY n 1 405 PRO n 1 406 PRO n 1 407 TYR n 1 408 LEU n 1 409 LEU n 1 410 ALA n 1 411 GLY n 1 412 ALA n 1 413 GLU n 1 414 VAL n 1 415 ASP n 1 416 ILE n 1 417 HIS n 1 418 PRO n 1 419 ASP n 1 420 GLY n 1 421 THR n 1 422 LEU n 1 423 ASP n 1 424 TYR n 1 425 PRO n 1 426 ASP n 1 427 TRP n 1 428 VAL n 1 429 LEU n 1 430 ARG n 1 431 GLU n 1 432 LEU n 1 433 ASP n 1 434 LEU n 1 435 VAL n 1 436 LEU n 1 437 VAL n 1 438 SER n 1 439 VAL n 1 440 HIS n 1 441 SER n 1 442 ARG n 1 443 PHE n 1 444 ASN n 1 445 LEU n 1 446 PRO n 1 447 LYS n 1 448 ALA n 1 449 ASP n 1 450 GLN n 1 451 THR n 1 452 LYS n 1 453 ARG n 1 454 LEU n 1 455 LEU n 1 456 LYS n 1 457 ALA n 1 458 LEU n 1 459 GLU n 1 460 ASN n 1 461 PRO n 1 462 PHE n 1 463 VAL n 1 464 HIS n 1 465 VAL n 1 466 LEU n 1 467 ALA n 1 468 HIS n 1 469 PRO n 1 470 THR n 1 471 ALA n 1 472 ARG n 1 473 LEU n 1 474 LEU n 1 475 GLY n 1 476 ARG n 1 477 ARG n 1 478 ALA n 1 479 PRO n 1 480 ILE n 1 481 GLU n 1 482 ALA n 1 483 ASP n 1 484 TRP n 1 485 GLU n 1 486 ALA n 1 487 VAL n 1 488 PHE n 1 489 GLN n 1 490 LYS n 1 491 ALA n 1 492 LYS n 1 493 GLU n 1 494 LYS n 1 495 GLY n 1 496 VAL n 1 497 ALA n 1 498 VAL n 1 499 GLU n 1 500 ILE n 1 501 ASP n 1 502 GLY n 1 503 TYR n 1 504 TYR n 1 505 ASP n 1 506 ARG n 1 507 MET n 1 508 ASP n 1 509 LEU n 1 510 PRO n 1 511 ASP n 1 512 ASP n 1 513 LEU n 1 514 ALA n 1 515 ARG n 1 516 MET n 1 517 ALA n 1 518 TYR n 1 519 GLY n 1 520 MET n 1 521 GLY n 1 522 LEU n 1 523 TRP n 1 524 ILE n 1 525 SER n 1 526 LEU n 1 527 SER n 1 528 THR n 1 529 ASP n 1 530 ALA n 1 531 HIS n 1 532 GLN n 1 533 THR n 1 534 ASP n 1 535 HIS n 1 536 LEU n 1 537 ARG n 1 538 PHE n 1 539 MET n 1 540 GLU n 1 541 LEU n 1 542 ALA n 1 543 VAL n 1 544 GLY n 1 545 THR n 1 546 ALA n 1 547 GLN n 1 548 ARG n 1 549 ALA n 1 550 TRP n 1 551 ILE n 1 552 GLY n 1 553 PRO n 1 554 GLU n 1 555 ARG n 1 556 VAL n 1 557 LEU n 1 558 ASN n 1 559 THR n 1 560 LEU n 1 561 ASP n 1 562 TYR n 1 563 GLU n 1 564 ASP n 1 565 LEU n 1 566 LEU n 1 567 SER n 1 568 TRP n 1 569 LEU n 1 570 LYS n 1 571 ALA n 1 572 ARG n 1 573 ARG n 1 574 GLY n 1 575 VAL n 2 1 DC n 2 2 DA n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 DT n 2 7 DDG n 3 1 DC n 3 2 DG n 3 3 DG n 3 4 DC n 3 5 DC n 3 6 DA n 3 7 DT n 3 8 DA n 3 9 DC n 3 10 DT n 3 11 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PolX, TTHA1150' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Rosetta _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DDG 'DNA linking' n "2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DG3 non-polymer . "2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O12 P3' 491.182 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 MET 16 16 16 MET MET A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 HIS 31 31 31 HIS HIS A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 HIS 81 81 81 HIS HIS A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 MET 96 96 96 MET MET A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 GLY 128 128 ? ? ? A . n A 1 129 ASP 129 129 ? ? ? A . n A 1 130 LEU 130 130 ? ? ? A . n A 1 131 THR 131 131 ? ? ? A . n A 1 132 ARG 132 132 ? ? ? A . n A 1 133 LEU 133 133 ? ? ? A . n A 1 134 LYS 134 134 ? ? ? A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 GLN 152 152 152 GLN GLN A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 ARG 158 158 158 ARG ARG A . n A 1 159 PRO 159 159 159 PRO PRO A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 SER 165 165 165 SER SER A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 SER 169 169 169 SER SER A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 ILE 174 174 174 ILE ILE A . n A 1 175 ARG 175 175 175 ARG ARG A . n A 1 176 ALA 176 176 176 ALA ALA A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 GLU 181 181 181 GLU GLU A . n A 1 182 ARG 182 182 182 ARG ARG A . n A 1 183 ALA 183 183 183 ALA ALA A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 CYS 186 186 186 CYS CYS A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 ARG 190 190 190 ARG ARG A . n A 1 191 ARG 191 191 191 ARG ARG A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 ASP 194 194 194 ASP ASP A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 VAL 196 196 196 VAL VAL A . n A 1 197 GLY 197 197 197 GLY GLY A . n A 1 198 ASP 198 198 198 ASP ASP A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 ASP 200 200 200 ASP ASP A . n A 1 201 PHE 201 201 201 PHE PHE A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 ALA 204 204 204 ALA ALA A . n A 1 205 SER 205 205 205 SER SER A . n A 1 206 ARG 206 206 206 ARG ARG A . n A 1 207 GLU 207 207 207 GLU GLU A . n A 1 208 GLY 208 208 208 GLY GLY A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 ARG 210 210 210 ARG ARG A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 GLU 213 213 213 GLU GLU A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 PHE 215 215 215 PHE PHE A . n A 1 216 VAL 216 216 216 VAL VAL A . n A 1 217 ARG 217 217 217 ARG ARG A . n A 1 218 LEU 218 218 218 LEU LEU A . n A 1 219 PRO 219 219 219 PRO PRO A . n A 1 220 GLN 220 220 220 GLN GLN A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 LYS 222 222 222 LYS LYS A . n A 1 223 GLU 223 223 223 GLU GLU A . n A 1 224 VAL 224 224 224 VAL VAL A . n A 1 225 TYR 225 225 225 TYR TYR A . n A 1 226 ALA 226 226 226 ALA ALA A . n A 1 227 LYS 227 227 227 LYS LYS A . n A 1 228 GLY 228 228 228 GLY GLY A . n A 1 229 LYS 229 229 229 LYS LYS A . n A 1 230 GLU 230 230 230 GLU GLU A . n A 1 231 ARG 231 231 231 ARG ARG A . n A 1 232 ALA 232 232 232 ALA ALA A . n A 1 233 THR 233 233 233 THR THR A . n A 1 234 VAL 234 234 234 VAL VAL A . n A 1 235 PHE 235 235 235 PHE PHE A . n A 1 236 LEU 236 236 236 LEU LEU A . n A 1 237 LYS 237 237 237 LYS LYS A . n A 1 238 ASN 238 238 238 ASN ASN A . n A 1 239 GLY 239 239 239 GLY GLY A . n A 1 240 LEU 240 240 240 LEU LEU A . n A 1 241 GLN 241 241 241 GLN GLN A . n A 1 242 VAL 242 242 242 VAL VAL A . n A 1 243 ASP 243 243 243 ASP ASP A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 ARG 245 245 245 ARG ARG A . n A 1 246 VAL 246 246 246 VAL VAL A . n A 1 247 VAL 247 247 247 VAL VAL A . n A 1 248 PRO 248 248 248 PRO PRO A . n A 1 249 PRO 249 249 249 PRO PRO A . n A 1 250 GLU 250 250 250 GLU GLU A . n A 1 251 SER 251 251 251 SER SER A . n A 1 252 TYR 252 252 252 TYR TYR A . n A 1 253 GLY 253 253 253 GLY GLY A . n A 1 254 ALA 254 254 254 ALA ALA A . n A 1 255 GLY 255 255 255 GLY GLY A . n A 1 256 LEU 256 256 256 LEU LEU A . n A 1 257 GLN 257 257 257 GLN GLN A . n A 1 258 TYR 258 258 258 TYR TYR A . n A 1 259 LEU 259 259 259 LEU LEU A . n A 1 260 THR 260 260 260 THR THR A . n A 1 261 GLY 261 261 261 GLY GLY A . n A 1 262 SER 262 262 262 SER SER A . n A 1 263 LYS 263 263 263 LYS LYS A . n A 1 264 ALA 264 264 264 ALA ALA A . n A 1 265 HIS 265 265 265 HIS HIS A . n A 1 266 SER 266 266 266 SER SER A . n A 1 267 ILE 267 267 267 ILE ILE A . n A 1 268 ARG 268 268 268 ARG ARG A . n A 1 269 LEU 269 269 269 LEU LEU A . n A 1 270 ARG 270 270 270 ARG ARG A . n A 1 271 ALA 271 271 271 ALA ALA A . n A 1 272 LEU 272 272 272 LEU LEU A . n A 1 273 ALA 273 273 273 ALA ALA A . n A 1 274 GLN 274 274 274 GLN GLN A . n A 1 275 GLU 275 275 275 GLU GLU A . n A 1 276 LYS 276 276 276 LYS LYS A . n A 1 277 GLY 277 277 277 GLY GLY A . n A 1 278 LEU 278 278 278 LEU LEU A . n A 1 279 LYS 279 279 279 LYS LYS A . n A 1 280 LEU 280 280 280 LEU LEU A . n A 1 281 SER 281 281 281 SER SER A . n A 1 282 GLU 282 282 282 GLU GLU A . n A 1 283 TYR 283 283 283 TYR TYR A . n A 1 284 GLY 284 284 284 GLY GLY A . n A 1 285 VAL 285 285 285 VAL VAL A . n A 1 286 PHE 286 286 286 PHE PHE A . n A 1 287 ARG 287 287 287 ARG ARG A . n A 1 288 GLY 288 288 288 GLY GLY A . n A 1 289 GLU 289 289 289 GLU GLU A . n A 1 290 LYS 290 290 290 LYS LYS A . n A 1 291 ARG 291 291 291 ARG ARG A . n A 1 292 ILE 292 292 292 ILE ILE A . n A 1 293 ALA 293 293 293 ALA ALA A . n A 1 294 GLY 294 294 294 GLY GLY A . n A 1 295 GLU 295 295 295 GLU GLU A . n A 1 296 THR 296 296 296 THR THR A . n A 1 297 GLU 297 297 297 GLU GLU A . n A 1 298 GLU 298 298 298 GLU GLU A . n A 1 299 GLU 299 299 299 GLU GLU A . n A 1 300 VAL 300 300 300 VAL VAL A . n A 1 301 TYR 301 301 301 TYR TYR A . n A 1 302 ALA 302 302 302 ALA ALA A . n A 1 303 ALA 303 303 303 ALA ALA A . n A 1 304 LEU 304 304 304 LEU LEU A . n A 1 305 GLY 305 305 305 GLY GLY A . n A 1 306 LEU 306 306 306 LEU LEU A . n A 1 307 PRO 307 307 307 PRO PRO A . n A 1 308 TRP 308 308 308 TRP TRP A . n A 1 309 ILE 309 309 309 ILE ILE A . n A 1 310 PRO 310 310 310 PRO PRO A . n A 1 311 PRO 311 311 311 PRO PRO A . n A 1 312 PRO 312 312 312 PRO PRO A . n A 1 313 LEU 313 313 313 LEU LEU A . n A 1 314 ARG 314 314 314 ARG ARG A . n A 1 315 GLU 315 315 315 GLU GLU A . n A 1 316 ASP 316 316 316 ASP ASP A . n A 1 317 GLN 317 317 317 GLN GLN A . n A 1 318 GLY 318 318 318 GLY GLY A . n A 1 319 GLU 319 319 319 GLU GLU A . n A 1 320 VAL 320 320 320 VAL VAL A . n A 1 321 GLU 321 321 321 GLU GLU A . n A 1 322 ALA 322 322 322 ALA ALA A . n A 1 323 ALA 323 323 323 ALA ALA A . n A 1 324 LEU 324 324 324 LEU LEU A . n A 1 325 GLU 325 325 325 GLU GLU A . n A 1 326 GLY 326 326 326 GLY GLY A . n A 1 327 ARG 327 327 327 ARG ARG A . n A 1 328 LEU 328 328 328 LEU LEU A . n A 1 329 PRO 329 329 329 PRO PRO A . n A 1 330 LYS 330 330 330 LYS LYS A . n A 1 331 LEU 331 331 331 LEU LEU A . n A 1 332 LEU 332 332 332 LEU LEU A . n A 1 333 GLU 333 333 333 GLU GLU A . n A 1 334 LEU 334 334 334 LEU LEU A . n A 1 335 PRO 335 335 335 PRO PRO A . n A 1 336 GLN 336 336 336 GLN GLN A . n A 1 337 VAL 337 337 337 VAL VAL A . n A 1 338 LYS 338 338 338 LYS LYS A . n A 1 339 GLY 339 339 339 GLY GLY A . n A 1 340 ASP 340 340 340 ASP ASP A . n A 1 341 LEU 341 341 341 LEU LEU A . n A 1 342 GLN 342 342 342 GLN GLN A . n A 1 343 VAL 343 343 343 VAL VAL A . n A 1 344 HIS 344 344 344 HIS HIS A . n A 1 345 SER 345 345 345 SER SER A . n A 1 346 THR 346 346 346 THR THR A . n A 1 347 TYR 347 347 347 TYR TYR A . n A 1 348 SER 348 348 348 SER SER A . n A 1 349 ASP 349 349 349 ASP ASP A . n A 1 350 GLY 350 350 350 GLY GLY A . n A 1 351 GLN 351 351 351 GLN GLN A . n A 1 352 ASN 352 352 352 ASN ASN A . n A 1 353 THR 353 353 353 THR THR A . n A 1 354 LEU 354 354 354 LEU LEU A . n A 1 355 GLU 355 355 355 GLU GLU A . n A 1 356 GLU 356 356 356 GLU GLU A . n A 1 357 LEU 357 357 357 LEU LEU A . n A 1 358 TRP 358 358 358 TRP TRP A . n A 1 359 GLU 359 359 359 GLU GLU A . n A 1 360 ALA 360 360 360 ALA ALA A . n A 1 361 ALA 361 361 361 ALA ALA A . n A 1 362 LYS 362 362 362 LYS LYS A . n A 1 363 THR 363 363 363 THR THR A . n A 1 364 MET 364 364 364 MET MET A . n A 1 365 GLY 365 365 365 GLY GLY A . n A 1 366 TYR 366 366 366 TYR TYR A . n A 1 367 ARG 367 367 367 ARG ARG A . n A 1 368 TYR 368 368 368 TYR TYR A . n A 1 369 LEU 369 369 369 LEU LEU A . n A 1 370 ALA 370 370 370 ALA ALA A . n A 1 371 VAL 371 371 371 VAL VAL A . n A 1 372 THR 372 372 372 THR THR A . n A 1 373 ASP 373 373 373 ASP ASP A . n A 1 374 HIS 374 374 374 HIS HIS A . n A 1 375 SER 375 375 375 SER SER A . n A 1 376 PRO 376 376 376 PRO PRO A . n A 1 377 ALA 377 377 377 ALA ALA A . n A 1 378 VAL 378 378 378 VAL VAL A . n A 1 379 ARG 379 379 379 ARG ARG A . n A 1 380 VAL 380 380 380 VAL VAL A . n A 1 381 ALA 381 381 ? ? ? A . n A 1 382 GLY 382 382 ? ? ? A . n A 1 383 GLY 383 383 383 GLY GLY A . n A 1 384 PRO 384 384 384 PRO PRO A . n A 1 385 SER 385 385 385 SER SER A . n A 1 386 PRO 386 386 386 PRO PRO A . n A 1 387 GLU 387 387 387 GLU GLU A . n A 1 388 GLU 388 388 388 GLU GLU A . n A 1 389 ALA 389 389 389 ALA ALA A . n A 1 390 LEU 390 390 390 LEU LEU A . n A 1 391 LYS 391 391 391 LYS LYS A . n A 1 392 ARG 392 392 392 ARG ARG A . n A 1 393 VAL 393 393 393 VAL VAL A . n A 1 394 GLY 394 394 394 GLY GLY A . n A 1 395 GLU 395 395 395 GLU GLU A . n A 1 396 ILE 396 396 396 ILE ILE A . n A 1 397 ARG 397 397 397 ARG ARG A . n A 1 398 ARG 398 398 398 ARG ARG A . n A 1 399 PHE 399 399 399 PHE PHE A . n A 1 400 ASN 400 400 400 ASN ASN A . n A 1 401 GLU 401 401 401 GLU GLU A . n A 1 402 THR 402 402 402 THR THR A . n A 1 403 HIS 403 403 403 HIS HIS A . n A 1 404 GLY 404 404 404 GLY GLY A . n A 1 405 PRO 405 405 405 PRO PRO A . n A 1 406 PRO 406 406 406 PRO PRO A . n A 1 407 TYR 407 407 407 TYR TYR A . n A 1 408 LEU 408 408 408 LEU LEU A . n A 1 409 LEU 409 409 409 LEU LEU A . n A 1 410 ALA 410 410 410 ALA ALA A . n A 1 411 GLY 411 411 411 GLY GLY A . n A 1 412 ALA 412 412 412 ALA ALA A . n A 1 413 GLU 413 413 413 GLU GLU A . n A 1 414 VAL 414 414 414 VAL VAL A . n A 1 415 ASP 415 415 415 ASP ASP A . n A 1 416 ILE 416 416 416 ILE ILE A . n A 1 417 HIS 417 417 417 HIS HIS A . n A 1 418 PRO 418 418 418 PRO PRO A . n A 1 419 ASP 419 419 419 ASP ASP A . n A 1 420 GLY 420 420 420 GLY GLY A . n A 1 421 THR 421 421 421 THR THR A . n A 1 422 LEU 422 422 422 LEU LEU A . n A 1 423 ASP 423 423 423 ASP ASP A . n A 1 424 TYR 424 424 424 TYR TYR A . n A 1 425 PRO 425 425 425 PRO PRO A . n A 1 426 ASP 426 426 426 ASP ASP A . n A 1 427 TRP 427 427 427 TRP TRP A . n A 1 428 VAL 428 428 428 VAL VAL A . n A 1 429 LEU 429 429 429 LEU LEU A . n A 1 430 ARG 430 430 430 ARG ARG A . n A 1 431 GLU 431 431 431 GLU GLU A . n A 1 432 LEU 432 432 432 LEU LEU A . n A 1 433 ASP 433 433 433 ASP ASP A . n A 1 434 LEU 434 434 434 LEU LEU A . n A 1 435 VAL 435 435 435 VAL VAL A . n A 1 436 LEU 436 436 436 LEU LEU A . n A 1 437 VAL 437 437 437 VAL VAL A . n A 1 438 SER 438 438 438 SER SER A . n A 1 439 VAL 439 439 439 VAL VAL A . n A 1 440 HIS 440 440 440 HIS HIS A . n A 1 441 SER 441 441 441 SER SER A . n A 1 442 ARG 442 442 442 ARG ARG A . n A 1 443 PHE 443 443 443 PHE PHE A . n A 1 444 ASN 444 444 444 ASN ASN A . n A 1 445 LEU 445 445 445 LEU LEU A . n A 1 446 PRO 446 446 446 PRO PRO A . n A 1 447 LYS 447 447 447 LYS LYS A . n A 1 448 ALA 448 448 448 ALA ALA A . n A 1 449 ASP 449 449 449 ASP ASP A . n A 1 450 GLN 450 450 450 GLN GLN A . n A 1 451 THR 451 451 451 THR THR A . n A 1 452 LYS 452 452 452 LYS LYS A . n A 1 453 ARG 453 453 453 ARG ARG A . n A 1 454 LEU 454 454 454 LEU LEU A . n A 1 455 LEU 455 455 455 LEU LEU A . n A 1 456 LYS 456 456 456 LYS LYS A . n A 1 457 ALA 457 457 457 ALA ALA A . n A 1 458 LEU 458 458 458 LEU LEU A . n A 1 459 GLU 459 459 459 GLU GLU A . n A 1 460 ASN 460 460 460 ASN ASN A . n A 1 461 PRO 461 461 461 PRO PRO A . n A 1 462 PHE 462 462 462 PHE PHE A . n A 1 463 VAL 463 463 463 VAL VAL A . n A 1 464 HIS 464 464 464 HIS HIS A . n A 1 465 VAL 465 465 465 VAL VAL A . n A 1 466 LEU 466 466 466 LEU LEU A . n A 1 467 ALA 467 467 467 ALA ALA A . n A 1 468 HIS 468 468 468 HIS HIS A . n A 1 469 PRO 469 469 469 PRO PRO A . n A 1 470 THR 470 470 470 THR THR A . n A 1 471 ALA 471 471 471 ALA ALA A . n A 1 472 ARG 472 472 472 ARG ARG A . n A 1 473 LEU 473 473 473 LEU LEU A . n A 1 474 LEU 474 474 474 LEU LEU A . n A 1 475 GLY 475 475 475 GLY GLY A . n A 1 476 ARG 476 476 476 ARG ARG A . n A 1 477 ARG 477 477 477 ARG ARG A . n A 1 478 ALA 478 478 478 ALA ALA A . n A 1 479 PRO 479 479 479 PRO PRO A . n A 1 480 ILE 480 480 480 ILE ILE A . n A 1 481 GLU 481 481 481 GLU GLU A . n A 1 482 ALA 482 482 482 ALA ALA A . n A 1 483 ASP 483 483 483 ASP ASP A . n A 1 484 TRP 484 484 484 TRP TRP A . n A 1 485 GLU 485 485 485 GLU GLU A . n A 1 486 ALA 486 486 486 ALA ALA A . n A 1 487 VAL 487 487 487 VAL VAL A . n A 1 488 PHE 488 488 488 PHE PHE A . n A 1 489 GLN 489 489 489 GLN GLN A . n A 1 490 LYS 490 490 490 LYS LYS A . n A 1 491 ALA 491 491 491 ALA ALA A . n A 1 492 LYS 492 492 492 LYS LYS A . n A 1 493 GLU 493 493 493 GLU GLU A . n A 1 494 LYS 494 494 494 LYS LYS A . n A 1 495 GLY 495 495 495 GLY GLY A . n A 1 496 VAL 496 496 496 VAL VAL A . n A 1 497 ALA 497 497 497 ALA ALA A . n A 1 498 VAL 498 498 498 VAL VAL A . n A 1 499 GLU 499 499 499 GLU GLU A . n A 1 500 ILE 500 500 500 ILE ILE A . n A 1 501 ASP 501 501 501 ASP ASP A . n A 1 502 GLY 502 502 502 GLY GLY A . n A 1 503 TYR 503 503 503 TYR TYR A . n A 1 504 TYR 504 504 504 TYR TYR A . n A 1 505 ASP 505 505 505 ASP ASP A . n A 1 506 ARG 506 506 506 ARG ARG A . n A 1 507 MET 507 507 507 MET MET A . n A 1 508 ASP 508 508 508 ASP ASP A . n A 1 509 LEU 509 509 509 LEU LEU A . n A 1 510 PRO 510 510 510 PRO PRO A . n A 1 511 ASP 511 511 511 ASP ASP A . n A 1 512 ASP 512 512 512 ASP ASP A . n A 1 513 LEU 513 513 513 LEU LEU A . n A 1 514 ALA 514 514 514 ALA ALA A . n A 1 515 ARG 515 515 515 ARG ARG A . n A 1 516 MET 516 516 516 MET MET A . n A 1 517 ALA 517 517 517 ALA ALA A . n A 1 518 TYR 518 518 518 TYR TYR A . n A 1 519 GLY 519 519 519 GLY GLY A . n A 1 520 MET 520 520 520 MET MET A . n A 1 521 GLY 521 521 521 GLY GLY A . n A 1 522 LEU 522 522 522 LEU LEU A . n A 1 523 TRP 523 523 523 TRP TRP A . n A 1 524 ILE 524 524 524 ILE ILE A . n A 1 525 SER 525 525 525 SER SER A . n A 1 526 LEU 526 526 526 LEU LEU A . n A 1 527 SER 527 527 527 SER SER A . n A 1 528 THR 528 528 528 THR THR A . n A 1 529 ASP 529 529 529 ASP ASP A . n A 1 530 ALA 530 530 530 ALA ALA A . n A 1 531 HIS 531 531 531 HIS HIS A . n A 1 532 GLN 532 532 532 GLN GLN A . n A 1 533 THR 533 533 533 THR THR A . n A 1 534 ASP 534 534 534 ASP ASP A . n A 1 535 HIS 535 535 535 HIS HIS A . n A 1 536 LEU 536 536 536 LEU LEU A . n A 1 537 ARG 537 537 537 ARG ARG A . n A 1 538 PHE 538 538 538 PHE PHE A . n A 1 539 MET 539 539 539 MET MET A . n A 1 540 GLU 540 540 540 GLU GLU A . n A 1 541 LEU 541 541 541 LEU LEU A . n A 1 542 ALA 542 542 542 ALA ALA A . n A 1 543 VAL 543 543 543 VAL VAL A . n A 1 544 GLY 544 544 544 GLY GLY A . n A 1 545 THR 545 545 545 THR THR A . n A 1 546 ALA 546 546 546 ALA ALA A . n A 1 547 GLN 547 547 547 GLN GLN A . n A 1 548 ARG 548 548 548 ARG ARG A . n A 1 549 ALA 549 549 549 ALA ALA A . n A 1 550 TRP 550 550 550 TRP TRP A . n A 1 551 ILE 551 551 551 ILE ILE A . n A 1 552 GLY 552 552 552 GLY GLY A . n A 1 553 PRO 553 553 553 PRO PRO A . n A 1 554 GLU 554 554 554 GLU GLU A . n A 1 555 ARG 555 555 555 ARG ARG A . n A 1 556 VAL 556 556 556 VAL VAL A . n A 1 557 LEU 557 557 557 LEU LEU A . n A 1 558 ASN 558 558 558 ASN ASN A . n A 1 559 THR 559 559 559 THR THR A . n A 1 560 LEU 560 560 560 LEU LEU A . n A 1 561 ASP 561 561 561 ASP ASP A . n A 1 562 TYR 562 562 562 TYR TYR A . n A 1 563 GLU 563 563 563 GLU GLU A . n A 1 564 ASP 564 564 564 ASP ASP A . n A 1 565 LEU 565 565 565 LEU LEU A . n A 1 566 LEU 566 566 566 LEU LEU A . n A 1 567 SER 567 567 567 SER SER A . n A 1 568 TRP 568 568 568 TRP TRP A . n A 1 569 LEU 569 569 569 LEU LEU A . n A 1 570 LYS 570 570 570 LYS LYS A . n A 1 571 ALA 571 571 571 ALA ALA A . n A 1 572 ARG 572 572 ? ? ? A . n A 1 573 ARG 573 573 ? ? ? A . n A 1 574 GLY 574 574 ? ? ? A . n A 1 575 VAL 575 575 ? ? ? A . n B 2 1 DC 1 1 1 DC DC P . n B 2 2 DA 2 2 2 DA DA P . n B 2 3 DG 3 3 3 DG DG P . n B 2 4 DT 4 4 4 DT DT P . n B 2 5 DA 5 5 5 DA DA P . n B 2 6 DT 6 6 6 DT DT P . n B 2 7 DDG 7 7 7 DDG DDG P . n C 3 1 DC 1 1 ? ? ? T . n C 3 2 DG 2 2 2 DG DG T . n C 3 3 DG 3 3 3 DG DG T . n C 3 4 DC 4 4 4 DC DC T . n C 3 5 DC 5 5 5 DC DC T . n C 3 6 DA 6 6 6 DA DA T . n C 3 7 DT 7 7 7 DT DT T . n C 3 8 DA 8 8 8 DA DA T . n C 3 9 DC 9 9 9 DC DC T . n C 3 10 DT 10 10 10 DT DT T . n C 3 11 DG 11 11 11 DG DG T . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DG3 1 576 1 DG3 DG3 A . E 5 MG 1 577 1 MG MG A . F 5 MG 1 578 2 MG MG A . G 6 ZN 1 579 3 ZN ZN A . H 7 CL 1 580 4 CL CL A . I 7 CL 1 581 5 CL CL A . J 7 CL 1 582 6 CL CL A . K 7 CL 1 583 7 CL CL A . L 8 SO4 1 584 1 SO4 SO4 A . M 9 HOH 1 585 19 HOH HOH A . M 9 HOH 2 586 25 HOH HOH A . M 9 HOH 3 587 27 HOH HOH A . M 9 HOH 4 588 30 HOH HOH A . M 9 HOH 5 589 34 HOH HOH A . M 9 HOH 6 590 37 HOH HOH A . M 9 HOH 7 591 40 HOH HOH A . M 9 HOH 8 592 41 HOH HOH A . M 9 HOH 9 593 42 HOH HOH A . M 9 HOH 10 594 43 HOH HOH A . M 9 HOH 11 595 46 HOH HOH A . M 9 HOH 12 596 47 HOH HOH A . M 9 HOH 13 597 49 HOH HOH A . M 9 HOH 14 598 51 HOH HOH A . M 9 HOH 15 599 53 HOH HOH A . M 9 HOH 16 600 58 HOH HOH A . M 9 HOH 17 601 59 HOH HOH A . M 9 HOH 18 602 61 HOH HOH A . M 9 HOH 19 603 65 HOH HOH A . M 9 HOH 20 604 66 HOH HOH A . M 9 HOH 21 605 67 HOH HOH A . M 9 HOH 22 606 68 HOH HOH A . M 9 HOH 23 607 74 HOH HOH A . N 9 HOH 1 12 2 HOH HOH T . N 9 HOH 2 50 50 HOH HOH T . N 9 HOH 3 76 76 HOH HOH T . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 REFMAC refmac_5.5.0110 24/04/2001 program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? # _cell.length_a 80.166 _cell.length_b 80.166 _cell.length_c 268.555 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3AU6 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 3AU6 _symmetry.Int_Tables_number 96 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3AU6 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.272 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 3.10 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 60.28 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '50mM Tris-HCl (pH 8.5), 25mM MgSO4 7H2O, 1.8M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2009-10-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si double crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 # _reflns.entry_id 3AU6 _reflns.d_resolution_high 3.300 _reflns.d_resolution_low 76.8200 _reflns.number_obs 13997 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_netI_over_sigmaI 14.800 _reflns.pdbx_chi_squared 0.987 _reflns.pdbx_redundancy 11.500 _reflns.percent_possible_obs 99.300 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 3.300 3.420 ? ? ? ? 0.200 ? ? 0.843 7.700 ? ? ? 1326 ? ? ? ? 98.100 ? ? 1 1 3.420 3.550 ? ? ? ? 0.163 ? ? 0.874 9.800 ? ? ? 1385 ? ? ? ? 99.800 ? ? 2 1 3.550 3.720 ? ? ? ? 0.143 ? ? 1.016 11.000 ? ? ? 1349 ? ? ? ? 99.800 ? ? 3 1 3.720 3.910 ? ? ? ? 0.127 ? ? 1.000 11.500 ? ? ? 1378 ? ? ? ? 99.800 ? ? 4 1 3.910 4.160 ? ? ? ? 0.117 ? ? 0.995 12.000 ? ? ? 1374 ? ? ? ? 99.700 ? ? 5 1 4.160 4.480 ? ? ? ? 0.111 ? ? 1.005 12.500 ? ? ? 1395 ? ? ? ? 99.800 ? ? 6 1 4.480 4.930 ? ? ? ? 0.097 ? ? 1.029 12.800 ? ? ? 1386 ? ? ? ? 99.500 ? ? 7 1 4.930 5.640 ? ? ? ? 0.069 ? ? 1.016 12.600 ? ? ? 1419 ? ? ? ? 99.600 ? ? 8 1 5.640 7.100 ? ? ? ? 0.041 ? ? 0.992 12.600 ? ? ? 1450 ? ? ? ? 99.500 ? ? 9 1 7.100 50.000 ? ? ? ? 0.027 ? ? 1.009 11.900 ? ? ? 1535 ? ? ? ? 97.300 ? ? 10 1 # _refine.entry_id 3AU6 _refine.ls_d_res_high 3.3000 _refine.ls_d_res_low 50.000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.8700 _refine.ls_number_reflns_obs 13885 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2589 _refine.ls_R_factor_R_work 0.2557 _refine.ls_wR_factor_R_work 0.2510 _refine.ls_R_factor_R_free 0.3194 _refine.ls_wR_factor_R_free 0.3260 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_number_reflns_R_free 685 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 83.2971 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 3.9600 _refine.aniso_B[2][2] 3.9600 _refine.aniso_B[3][3] -7.9300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9130 _refine.correlation_coeff_Fo_to_Fc_free 0.8690 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.6510 _refine.overall_SU_ML 0.6010 _refine.overall_SU_B 35.6430 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 129.120 _refine.B_iso_min 12.540 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4425 _refine_hist.pdbx_number_atoms_nucleic_acid 346 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 26 _refine_hist.number_atoms_total 4839 _refine_hist.d_res_high 3.3000 _refine_hist.d_res_low 50.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 4935 0.014 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 3371 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 6745 1.631 2.087 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 8178 0.944 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 559 7.452 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 209 36.654 22.967 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 798 21.936 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 48 16.266 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 736 0.075 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 5205 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 964 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2791 0.531 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 1139 0.062 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 4460 0.997 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 2144 1.067 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 2285 1.876 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 3.381 3.295 999 96.597 914 0.317 51 0.377 . . . . . 'X-RAY DIFFRACTION' 20 3.473 3.381 1001 99.201 949 0.319 44 0.451 . . . . . 'X-RAY DIFFRACTION' 20 3.574 3.473 936 99.145 866 0.304 62 0.360 . . . . . 'X-RAY DIFFRACTION' 20 3.683 3.574 945 99.365 893 0.310 46 0.361 . . . . . 'X-RAY DIFFRACTION' 20 3.804 3.683 912 99.123 858 0.320 46 0.347 . . . . . 'X-RAY DIFFRACTION' 20 3.937 3.804 853 98.945 808 0.281 36 0.463 . . . . . 'X-RAY DIFFRACTION' 20 4.085 3.937 856 99.416 817 0.244 34 0.274 . . . . . 'X-RAY DIFFRACTION' 20 4.251 4.085 824 99.029 777 0.232 39 0.361 . . . . . 'X-RAY DIFFRACTION' 20 4.440 4.251 781 99.616 735 0.226 43 0.274 . . . . . 'X-RAY DIFFRACTION' 20 4.656 4.440 752 99.335 708 0.226 39 0.275 . . . . . 'X-RAY DIFFRACTION' 20 4.907 4.656 727 98.762 674 0.237 44 0.259 . . . . . 'X-RAY DIFFRACTION' 20 5.203 4.907 690 99.275 660 0.284 25 0.347 . . . . . 'X-RAY DIFFRACTION' 20 5.560 5.203 643 98.911 605 0.270 31 0.330 . . . . . 'X-RAY DIFFRACTION' 20 6.003 5.560 617 99.352 578 0.280 35 0.363 . . . . . 'X-RAY DIFFRACTION' 20 6.572 6.003 569 100.000 540 0.279 29 0.470 . . . . . 'X-RAY DIFFRACTION' 20 7.341 6.572 523 99.044 500 0.256 18 0.364 . . . . . 'X-RAY DIFFRACTION' 20 8.464 7.341 464 99.784 441 0.205 22 0.258 . . . . . 'X-RAY DIFFRACTION' 20 10.335 8.464 408 99.510 387 0.185 19 0.233 . . . . . 'X-RAY DIFFRACTION' 20 14.485 10.335 330 99.394 315 0.186 13 0.297 . . . . . 'X-RAY DIFFRACTION' 20 76.817 14.485 214 85.981 175 0.320 9 0.117 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3AU6 _struct.title 'DNA polymerase X from Thermus thermophilus HB8 ternary complex with primer/template DNA and ddGTP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3AU6 _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text ;RSGI, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, POLXc domain, PHP domain, DNA polymerase, dRP lyase, AP endonuclease, DNA repair, DNA binding, nucleotide binding, TRANSFERASE-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 7 ? I N N 7 ? J N N 7 ? K N N 7 ? L N N 8 ? M N N 9 ? N N N 9 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q5SJ64_THET8 Q5SJ64 1 ;MRNQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKVRK HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPL GAVLSLARSLLEAIRALPGVERAELCGSARRYKDTVGDLDFLVASREGERAVEGFVRLPQVKEVYAKGKERATVFLKNGL QVDLRVVPPESYGAGLQYLTGSKAHSIRLRALAQEKGLKLSEYGVFRGEKRIAGETEEEVYAALGLPWIPPPLREDQGEV EAALEGRLPKLLELPQVKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVGEIRRFN ETHGPPYLLAGAEVDIHPDGTLDYPDWVLRELDLVLVSVHSRFNLPKADQTKRLLKALENPFVHVLAHPTARLLGRRAPI EADWEAVFQKAKEKGVAVEIDGYYDRMDLPDDLARMAYGMGLWISLSTDAHQTDHLRFMELAVGTAQRAWIGPERVLNTL DYEDLLSWLKARRGV ; 1 ? 2 PDB 3AU6 3AU6 2 ? ? ? 3 PDB 3AU6 3AU6 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3AU6 A 1 ? 575 ? Q5SJ64 1 ? 575 ? 1 575 2 2 3AU6 P 1 ? 7 ? 3AU6 1 ? 7 ? 1 7 3 3 3AU6 T 1 ? 11 ? 3AU6 1 ? 11 ? 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 2 ? GLY A 21 ? ARG A 2 GLY A 21 1 ? 20 HELX_P HELX_P2 2 ASN A 23 ? TYR A 38 ? ASN A 23 TYR A 38 1 ? 16 HELX_P HELX_P3 3 PRO A 43 ? GLU A 49 ? PRO A 43 GLU A 49 1 ? 7 HELX_P HELX_P4 4 GLY A 62 ? ARG A 74 ? GLY A 62 ARG A 74 1 ? 13 HELX_P HELX_P5 5 VAL A 78 ? VAL A 88 ? VAL A 78 VAL A 88 1 ? 11 HELX_P HELX_P6 6 PRO A 89 ? GLU A 97 ? PRO A 89 GLU A 97 1 ? 9 HELX_P HELX_P7 7 GLY A 102 ? GLY A 114 ? GLY A 102 GLY A 114 1 ? 13 HELX_P HELX_P8 8 SER A 117 ? ASP A 126 ? SER A 117 ASP A 126 1 ? 10 HELX_P HELX_P9 9 GLY A 137 ? GLY A 155 ? GLY A 137 GLY A 155 1 ? 19 HELX_P HELX_P10 10 VAL A 163 ? ALA A 176 ? VAL A 163 ALA A 176 1 ? 14 HELX_P HELX_P11 11 CYS A 186 ? ARG A 191 ? CYS A 186 ARG A 191 1 ? 6 HELX_P HELX_P12 12 ARG A 210 ? VAL A 216 ? ARG A 210 VAL A 216 1 ? 7 HELX_P HELX_P13 13 PRO A 248 ? GLU A 250 ? PRO A 248 GLU A 250 5 ? 3 HELX_P HELX_P14 14 SER A 251 ? GLY A 261 ? SER A 251 GLY A 261 1 ? 11 HELX_P HELX_P15 15 SER A 262 ? LYS A 276 ? SER A 262 LYS A 276 1 ? 15 HELX_P HELX_P16 16 THR A 296 ? LEU A 304 ? THR A 296 LEU A 304 1 ? 9 HELX_P HELX_P17 17 PRO A 310 ? ARG A 314 ? PRO A 310 ARG A 314 5 ? 5 HELX_P HELX_P18 18 GLY A 318 ? LEU A 324 ? GLY A 318 LEU A 324 1 ? 7 HELX_P HELX_P19 19 GLU A 333 ? VAL A 337 ? GLU A 333 VAL A 337 5 ? 5 HELX_P HELX_P20 20 THR A 353 ? GLY A 365 ? THR A 353 GLY A 365 1 ? 13 HELX_P HELX_P21 21 SER A 385 ? GLU A 401 ? SER A 385 GLU A 401 1 ? 17 HELX_P HELX_P22 22 PRO A 425 ? ARG A 430 ? PRO A 425 ARG A 430 1 ? 6 HELX_P HELX_P23 23 PRO A 446 ? LEU A 458 ? PRO A 446 LEU A 458 1 ? 13 HELX_P HELX_P24 24 ASP A 483 ? GLU A 493 ? ASP A 483 GLU A 493 1 ? 11 HELX_P HELX_P25 25 PRO A 510 ? GLY A 519 ? PRO A 510 GLY A 519 1 ? 10 HELX_P HELX_P26 26 GLN A 532 ? ARG A 537 ? GLN A 532 ARG A 537 5 ? 6 HELX_P HELX_P27 27 PHE A 538 ? ALA A 549 ? PHE A 538 ALA A 549 1 ? 12 HELX_P HELX_P28 28 VAL A 556 ? LEU A 560 ? VAL A 556 LEU A 560 5 ? 5 HELX_P HELX_P29 29 ASP A 561 ? ALA A 571 ? ASP A 561 ALA A 571 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 6 "O3'" ? ? ? 1_555 B DDG 7 P ? ? P DT 6 P DDG 7 1_555 ? ? ? ? ? ? ? 1.493 ? ? metalc1 metalc ? ? A SER 188 OG ? ? ? 1_555 E MG . MG ? ? A SER 188 A MG 577 1_555 ? ? ? ? ? ? ? 2.886 ? ? metalc2 metalc ? ? A ASP 198 OD2 ? ? ? 1_555 F MG . MG ? ? A ASP 198 A MG 578 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc3 metalc ? ? A ASP 200 OD1 ? ? ? 1_555 F MG . MG ? ? A ASP 200 A MG 578 1_555 ? ? ? ? ? ? ? 2.531 ? ? metalc4 metalc ? ? A GLU 413 OE2 ? ? ? 1_555 G ZN . ZN ? ? A GLU 413 A ZN 579 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc5 metalc ? ? A HIS 468 NE2 ? ? ? 1_555 G ZN . ZN ? ? A HIS 468 A ZN 579 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc6 metalc ? ? D DG3 . O3A ? ? ? 1_555 E MG . MG ? ? A DG3 576 A MG 577 1_555 ? ? ? ? ? ? ? 1.956 ? ? metalc7 metalc ? ? D DG3 . O1A ? ? ? 1_555 E MG . MG ? ? A DG3 576 A MG 577 1_555 ? ? ? ? ? ? ? 2.954 ? ? metalc8 metalc ? ? D DG3 . O1A ? ? ? 1_555 F MG . MG ? ? A DG3 576 A MG 578 1_555 ? ? ? ? ? ? ? 1.875 ? ? metalc9 metalc ? ? D DG3 . "O5'" ? ? ? 1_555 F MG . MG ? ? A DG3 576 A MG 578 1_555 ? ? ? ? ? ? ? 2.929 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 11 N1 ? ? P DC 1 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 11 O6 ? ? P DC 1 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 11 N2 ? ? P DC 1 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 10 N3 ? ? P DA 2 T DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 10 O4 ? ? P DA 2 T DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 9 N3 ? ? P DG 3 T DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 9 O2 ? ? P DG 3 T DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 9 N4 ? ? P DG 3 T DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 8 N1 ? ? P DT 4 T DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 8 N6 ? ? P DT 4 T DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 7 N3 ? ? P DA 5 T DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 7 O4 ? ? P DA 5 T DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 6 N1 ? ? P DT 6 T DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 6 N6 ? ? P DT 6 T DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DDG 7 N1 ? ? ? 1_555 C DC 5 N3 ? ? P DDG 7 T DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DDG 7 N2 ? ? ? 1_555 C DC 5 O2 ? ? P DDG 7 T DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DDG 7 O6 ? ? ? 1_555 C DC 5 N4 ? ? P DDG 7 T DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 188 ? A SER 188 ? 1_555 MG ? E MG . ? A MG 577 ? 1_555 O3A ? D DG3 . ? A DG3 576 ? 1_555 117.2 ? 2 OG ? A SER 188 ? A SER 188 ? 1_555 MG ? E MG . ? A MG 577 ? 1_555 O1A ? D DG3 . ? A DG3 576 ? 1_555 144.1 ? 3 O3A ? D DG3 . ? A DG3 576 ? 1_555 MG ? E MG . ? A MG 577 ? 1_555 O1A ? D DG3 . ? A DG3 576 ? 1_555 57.0 ? 4 OD2 ? A ASP 198 ? A ASP 198 ? 1_555 MG ? F MG . ? A MG 578 ? 1_555 OD1 ? A ASP 200 ? A ASP 200 ? 1_555 71.3 ? 5 OD2 ? A ASP 198 ? A ASP 198 ? 1_555 MG ? F MG . ? A MG 578 ? 1_555 O1A ? D DG3 . ? A DG3 576 ? 1_555 76.9 ? 6 OD1 ? A ASP 200 ? A ASP 200 ? 1_555 MG ? F MG . ? A MG 578 ? 1_555 O1A ? D DG3 . ? A DG3 576 ? 1_555 94.4 ? 7 OD2 ? A ASP 198 ? A ASP 198 ? 1_555 MG ? F MG . ? A MG 578 ? 1_555 "O5'" ? D DG3 . ? A DG3 576 ? 1_555 113.4 ? 8 OD1 ? A ASP 200 ? A ASP 200 ? 1_555 MG ? F MG . ? A MG 578 ? 1_555 "O5'" ? D DG3 . ? A DG3 576 ? 1_555 69.6 ? 9 O1A ? D DG3 . ? A DG3 576 ? 1_555 MG ? F MG . ? A MG 578 ? 1_555 "O5'" ? D DG3 . ? A DG3 576 ? 1_555 55.3 ? 10 OE2 ? A GLU 413 ? A GLU 413 ? 1_555 ZN ? G ZN . ? A ZN 579 ? 1_555 NE2 ? A HIS 468 ? A HIS 468 ? 1_555 67.0 ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 261 A . ? GLY 261 A SER 262 A ? SER 262 A 1 -7.16 2 GLY 383 A . ? GLY 383 A PRO 384 A ? PRO 384 A 1 -7.77 3 PRO 405 A . ? PRO 405 A PRO 406 A ? PRO 406 A 1 2.87 4 ASP 508 A . ? ASP 508 A LEU 509 A ? LEU 509 A 1 -16.22 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? C ? 3 ? D ? 3 ? E ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? parallel D 2 3 ? parallel E 1 2 ? parallel E 2 3 ? parallel E 3 4 ? parallel E 4 5 ? parallel E 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 158 ? PRO A 159 ? ARG A 158 PRO A 159 A 2 THR A 195 ? VAL A 196 ? THR A 195 VAL A 196 B 1 LEU A 199 ? LEU A 202 ? LEU A 199 LEU A 202 B 2 GLN A 241 ? ARG A 245 ? GLN A 241 ARG A 245 B 3 ARG A 231 ? LEU A 236 ? ARG A 231 LEU A 236 B 4 VAL A 221 ? ALA A 226 ? VAL A 221 ALA A 226 C 1 LYS A 279 ? LEU A 280 ? LYS A 279 LEU A 280 C 2 VAL A 285 ? ARG A 287 ? VAL A 285 ARG A 287 C 3 LYS A 290 ? ALA A 293 ? LYS A 290 ALA A 293 D 1 GLY A 339 ? ASP A 340 ? GLY A 339 ASP A 340 D 2 TYR A 368 ? ALA A 370 ? TYR A 368 ALA A 370 D 3 TYR A 407 ? LEU A 409 ? TYR A 407 LEU A 409 E 1 ASP A 373 ? HIS A 374 ? ASP A 373 HIS A 374 E 2 GLY A 411 ? VAL A 414 ? GLY A 411 VAL A 414 E 3 LEU A 434 ? VAL A 437 ? LEU A 434 VAL A 437 E 4 VAL A 465 ? LEU A 466 ? VAL A 465 LEU A 466 E 5 ALA A 497 ? ASP A 501 ? ALA A 497 ASP A 501 E 6 ILE A 524 ? SER A 527 ? ILE A 524 SER A 527 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 158 ? N ARG A 158 O VAL A 196 ? O VAL A 196 B 1 2 N LEU A 199 ? N LEU A 199 O GLN A 241 ? O GLN A 241 B 2 3 O VAL A 242 ? O VAL A 242 N VAL A 234 ? N VAL A 234 B 3 4 O PHE A 235 ? O PHE A 235 N GLU A 223 ? N GLU A 223 C 1 2 N LYS A 279 ? N LYS A 279 O PHE A 286 ? O PHE A 286 C 2 3 N VAL A 285 ? N VAL A 285 O ILE A 292 ? O ILE A 292 D 1 2 N ASP A 340 ? N ASP A 340 O ALA A 370 ? O ALA A 370 D 2 3 N LEU A 369 ? N LEU A 369 O LEU A 409 ? O LEU A 409 E 1 2 N ASP A 373 ? N ASP A 373 O GLU A 413 ? O GLU A 413 E 2 3 N ALA A 412 ? N ALA A 412 O LEU A 436 ? O LEU A 436 E 3 4 N VAL A 435 ? N VAL A 435 O VAL A 465 ? O VAL A 465 E 4 5 N LEU A 466 ? N LEU A 466 O GLU A 499 ? O GLU A 499 E 5 6 N VAL A 498 ? N VAL A 498 O SER A 525 ? O SER A 525 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DG3 576 ? 16 'BINDING SITE FOR RESIDUE DG3 A 576' AC2 Software A MG 577 ? 4 'BINDING SITE FOR RESIDUE MG A 577' AC3 Software A MG 578 ? 4 'BINDING SITE FOR RESIDUE MG A 578' AC4 Software A ZN 579 ? 4 'BINDING SITE FOR RESIDUE ZN A 579' AC5 Software A CL 580 ? 1 'BINDING SITE FOR RESIDUE CL A 580' AC6 Software A CL 581 ? 2 'BINDING SITE FOR RESIDUE CL A 581' AC7 Software A CL 582 ? 1 'BINDING SITE FOR RESIDUE CL A 582' AC8 Software A SO4 584 ? 3 'BINDING SITE FOR RESIDUE SO4 A 584' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 ARG A 157 ? ARG A 157 . ? 1_555 ? 2 AC1 16 GLY A 187 ? GLY A 187 . ? 1_555 ? 3 AC1 16 SER A 188 ? SER A 188 . ? 1_555 ? 4 AC1 16 ARG A 191 ? ARG A 191 . ? 1_555 ? 5 AC1 16 VAL A 196 ? VAL A 196 . ? 1_555 ? 6 AC1 16 GLY A 197 ? GLY A 197 . ? 1_555 ? 7 AC1 16 ASP A 198 ? ASP A 198 . ? 1_555 ? 8 AC1 16 ASP A 200 ? ASP A 200 . ? 1_555 ? 9 AC1 16 TYR A 258 ? TYR A 258 . ? 1_555 ? 10 AC1 16 GLY A 261 ? GLY A 261 . ? 1_555 ? 11 AC1 16 LYS A 263 ? LYS A 263 . ? 1_555 ? 12 AC1 16 ARG A 270 ? ARG A 270 . ? 1_555 ? 13 AC1 16 MG E . ? MG A 577 . ? 1_555 ? 14 AC1 16 MG F . ? MG A 578 . ? 1_555 ? 15 AC1 16 DDG B 7 ? DDG P 7 . ? 1_555 ? 16 AC1 16 DC C 4 ? DC T 4 . ? 1_555 ? 17 AC2 4 SER A 188 ? SER A 188 . ? 1_555 ? 18 AC2 4 ASP A 198 ? ASP A 198 . ? 1_555 ? 19 AC2 4 ASP A 200 ? ASP A 200 . ? 1_555 ? 20 AC2 4 DG3 D . ? DG3 A 576 . ? 1_555 ? 21 AC3 4 ASP A 198 ? ASP A 198 . ? 1_555 ? 22 AC3 4 ASP A 200 ? ASP A 200 . ? 1_555 ? 23 AC3 4 ASP A 243 ? ASP A 243 . ? 1_555 ? 24 AC3 4 DG3 D . ? DG3 A 576 . ? 1_555 ? 25 AC4 4 GLU A 413 ? GLU A 413 . ? 1_555 ? 26 AC4 4 HIS A 440 ? HIS A 440 . ? 1_555 ? 27 AC4 4 HIS A 468 ? HIS A 468 . ? 1_555 ? 28 AC4 4 ASP A 529 ? ASP A 529 . ? 1_555 ? 29 AC5 1 LYS A 193 ? LYS A 193 . ? 1_555 ? 30 AC6 2 ARG A 107 ? ARG A 107 . ? 5_554 ? 31 AC6 2 ASP A 426 ? ASP A 426 . ? 1_555 ? 32 AC7 1 LYS A 338 ? LYS A 338 . ? 1_555 ? 33 AC8 3 HIS A 440 ? HIS A 440 . ? 1_555 ? 34 AC8 3 PHE A 443 ? PHE A 443 . ? 1_555 ? 35 AC8 3 ARG A 477 ? ARG A 477 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 A ASP 200 ? ? MG A MG 577 ? ? 1.55 2 1 O1G A DG3 576 ? ? MG A MG 577 ? ? 1.57 3 1 OG1 A THR 470 ? ? OD1 A ASP 508 ? ? 1.98 4 1 O A TYR 503 ? ? O A ARG 506 ? ? 2.14 5 1 N A ASP 316 ? ? OE1 A GLU 319 ? ? 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" P DC 1 ? ? "C3'" P DC 1 ? ? 1.371 1.419 -0.048 0.006 N 2 1 "O3'" P DT 6 ? ? P P DDG 7 ? ? 1.493 1.607 -0.114 0.012 Y 3 1 "O3'" T DC 4 ? ? "C3'" T DC 4 ? ? 1.371 1.419 -0.048 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" P DA 2 ? ? "C1'" P DA 2 ? ? N9 P DA 2 ? ? 103.64 108.00 -4.36 0.70 N 2 1 N1 P DA 2 ? ? C6 P DA 2 ? ? N6 P DA 2 ? ? 123.16 118.60 4.56 0.60 N 3 1 "O4'" P DT 4 ? ? "C1'" P DT 4 ? ? N1 P DT 4 ? ? 112.08 108.30 3.78 0.30 N 4 1 N3 P DT 4 ? ? C4 P DT 4 ? ? O4 P DT 4 ? ? 124.53 119.90 4.63 0.60 N 5 1 C5 P DT 4 ? ? C4 P DT 4 ? ? O4 P DT 4 ? ? 119.90 124.90 -5.00 0.70 N 6 1 "C3'" P DA 5 ? ? "C2'" P DA 5 ? ? "C1'" P DA 5 ? ? 97.22 102.40 -5.18 0.80 N 7 1 "O4'" P DT 6 ? ? "C1'" P DT 6 ? ? N1 P DT 6 ? ? 112.30 108.30 4.00 0.30 N 8 1 "O3'" P DT 6 ? ? P P DDG 7 ? ? "O5'" P DDG 7 ? ? 70.36 104.00 -33.64 1.90 Y 9 1 "O3'" P DT 6 ? ? P P DDG 7 ? ? OP2 P DDG 7 ? ? 125.14 110.50 14.64 1.10 Y 10 1 "C3'" T DG 2 ? ? "C2'" T DG 2 ? ? "C1'" T DG 2 ? ? 96.01 102.40 -6.39 0.80 N 11 1 "O4'" T DG 2 ? ? "C1'" T DG 2 ? ? N9 T DG 2 ? ? 111.54 108.30 3.24 0.30 N 12 1 "C3'" T DG 2 ? ? "O3'" T DG 2 ? ? P T DG 3 ? ? 128.18 119.70 8.48 1.20 Y 13 1 "O4'" T DG 3 ? ? "C1'" T DG 3 ? ? N9 T DG 3 ? ? 113.73 108.30 5.43 0.30 N 14 1 "O4'" T DC 4 ? ? "C4'" T DC 4 ? ? "C3'" T DC 4 ? ? 101.78 104.50 -2.72 0.40 N 15 1 "O4'" T DC 4 ? ? "C1'" T DC 4 ? ? N1 T DC 4 ? ? 111.39 108.30 3.09 0.30 N 16 1 "O4'" T DC 5 ? ? "C1'" T DC 5 ? ? "C2'" T DC 5 ? ? 98.86 105.90 -7.04 0.80 N 17 1 "O4'" T DC 5 ? ? "C1'" T DC 5 ? ? N1 T DC 5 ? ? 110.54 108.30 2.24 0.30 N 18 1 "C3'" T DC 5 ? ? "O3'" T DC 5 ? ? P T DA 6 ? ? 128.06 119.70 8.36 1.20 Y 19 1 "C3'" T DT 7 ? ? "O3'" T DT 7 ? ? P T DA 8 ? ? 127.52 119.70 7.82 1.20 Y 20 1 "C3'" T DA 8 ? ? "O3'" T DA 8 ? ? P T DC 9 ? ? 127.34 119.70 7.64 1.20 Y 21 1 "C3'" T DC 9 ? ? "O3'" T DC 9 ? ? P T DT 10 ? ? 130.49 119.70 10.79 1.20 Y 22 1 "O4'" T DT 10 ? ? "C4'" T DT 10 ? ? "C3'" T DT 10 ? ? 100.94 104.50 -3.56 0.40 N 23 1 "O4'" T DT 10 ? ? "C1'" T DT 10 ? ? N1 T DT 10 ? ? 110.54 108.30 2.24 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 23 ? ? -20.43 120.69 2 1 GLU A 45 ? ? -23.26 -59.57 3 1 LYS A 50 ? ? -169.47 32.88 4 1 GLU A 67 ? ? -57.95 -7.21 5 1 LEU A 70 ? ? -61.48 -76.62 6 1 PHE A 72 ? ? -83.41 -76.82 7 1 VAL A 101 ? ? -84.91 -97.65 8 1 PRO A 103 ? ? -23.55 -77.42 9 1 PHE A 136 ? ? -58.75 -84.39 10 1 ALA A 149 ? ? -58.62 -76.66 11 1 LYS A 156 ? ? 75.37 -14.70 12 1 VAL A 163 ? ? -144.30 -19.92 13 1 CYS A 186 ? ? -122.66 -152.81 14 1 ALA A 211 ? ? -63.80 -81.24 15 1 LYS A 222 ? ? -81.68 -97.06 16 1 ALA A 232 ? ? -178.91 139.10 17 1 GLU A 295 ? ? -18.18 -54.04 18 1 TRP A 308 ? ? -30.59 113.82 19 1 PRO A 311 ? ? -27.64 -66.15 20 1 ASP A 316 ? ? 60.08 67.75 21 1 PRO A 335 ? ? -29.76 -62.90 22 1 GLN A 342 ? ? 166.82 112.86 23 1 SER A 348 ? ? -152.65 -154.28 24 1 VAL A 371 ? ? -106.20 67.11 25 1 ALA A 377 ? ? -66.00 37.14 26 1 VAL A 378 ? ? -130.35 -60.14 27 1 ARG A 379 ? ? -104.28 57.33 28 1 ARG A 430 ? ? -29.73 -38.66 29 1 ARG A 442 ? ? 24.93 84.66 30 1 LEU A 458 ? ? -55.50 -8.40 31 1 HIS A 464 ? ? -96.41 -73.39 32 1 HIS A 468 ? ? -5.21 78.66 33 1 ALA A 471 ? ? 68.36 -3.11 34 1 ARG A 476 ? ? -140.32 -30.24 35 1 PRO A 479 ? ? -46.23 163.57 36 1 GLU A 485 ? ? -26.56 -62.17 37 1 MET A 507 ? ? -141.33 58.65 38 1 ASP A 511 ? ? -18.78 -72.26 39 1 PHE A 538 ? ? -65.08 22.40 40 1 ARG A 555 ? ? 74.56 37.55 41 1 TYR A 562 ? ? -8.28 -71.87 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id DDG _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id P _pdbx_struct_mod_residue.auth_comp_id DDG _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_phasing_MR.entry_id 3AU6 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.480 _pdbx_phasing_MR.d_res_low_rotation 32.130 _pdbx_phasing_MR.d_res_high_translation 3.480 _pdbx_phasing_MR.d_res_low_translation 32.130 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 128 ? A GLY 128 2 1 Y 1 A ASP 129 ? A ASP 129 3 1 Y 1 A LEU 130 ? A LEU 130 4 1 Y 1 A THR 131 ? A THR 131 5 1 Y 1 A ARG 132 ? A ARG 132 6 1 Y 1 A LEU 133 ? A LEU 133 7 1 Y 1 A LYS 134 ? A LYS 134 8 1 Y 1 A ALA 381 ? A ALA 381 9 1 Y 1 A GLY 382 ? A GLY 382 10 1 Y 1 A ARG 572 ? A ARG 572 11 1 Y 1 A ARG 573 ? A ARG 573 12 1 Y 1 A GLY 574 ? A GLY 574 13 1 Y 1 A VAL 575 ? A VAL 575 14 1 Y 1 T DC 1 ? C DC 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DA OP3 O N N 89 DA P P N N 90 DA OP1 O N N 91 DA OP2 O N N 92 DA "O5'" O N N 93 DA "C5'" C N N 94 DA "C4'" C N R 95 DA "O4'" O N N 96 DA "C3'" C N S 97 DA "O3'" O N N 98 DA "C2'" C N N 99 DA "C1'" C N R 100 DA N9 N Y N 101 DA C8 C Y N 102 DA N7 N Y N 103 DA C5 C Y N 104 DA C6 C Y N 105 DA N6 N N N 106 DA N1 N Y N 107 DA C2 C Y N 108 DA N3 N Y N 109 DA C4 C Y N 110 DA HOP3 H N N 111 DA HOP2 H N N 112 DA "H5'" H N N 113 DA "H5''" H N N 114 DA "H4'" H N N 115 DA "H3'" H N N 116 DA "HO3'" H N N 117 DA "H2'" H N N 118 DA "H2''" H N N 119 DA "H1'" H N N 120 DA H8 H N N 121 DA H61 H N N 122 DA H62 H N N 123 DA H2 H N N 124 DC OP3 O N N 125 DC P P N N 126 DC OP1 O N N 127 DC OP2 O N N 128 DC "O5'" O N N 129 DC "C5'" C N N 130 DC "C4'" C N R 131 DC "O4'" O N N 132 DC "C3'" C N S 133 DC "O3'" O N N 134 DC "C2'" C N N 135 DC "C1'" C N R 136 DC N1 N N N 137 DC C2 C N N 138 DC O2 O N N 139 DC N3 N N N 140 DC C4 C N N 141 DC N4 N N N 142 DC C5 C N N 143 DC C6 C N N 144 DC HOP3 H N N 145 DC HOP2 H N N 146 DC "H5'" H N N 147 DC "H5''" H N N 148 DC "H4'" H N N 149 DC "H3'" H N N 150 DC "HO3'" H N N 151 DC "H2'" H N N 152 DC "H2''" H N N 153 DC "H1'" H N N 154 DC H41 H N N 155 DC H42 H N N 156 DC H5 H N N 157 DC H6 H N N 158 DDG OP3 O N N 159 DDG P P N N 160 DDG OP1 O N N 161 DDG OP2 O N N 162 DDG "O5'" O N N 163 DDG "C5'" C N N 164 DDG "C4'" C N S 165 DDG "O4'" O N N 166 DDG "C3'" C N N 167 DDG "C2'" C N N 168 DDG "C1'" C N R 169 DDG N9 N Y N 170 DDG C8 C Y N 171 DDG N7 N Y N 172 DDG C5 C Y N 173 DDG C6 C N N 174 DDG O6 O N N 175 DDG N1 N N N 176 DDG C2 C N N 177 DDG N2 N N N 178 DDG N3 N N N 179 DDG C4 C Y N 180 DDG HOP3 H N N 181 DDG HOP2 H N N 182 DDG "H5'" H N N 183 DDG "H5''" H N N 184 DDG "H4'" H N N 185 DDG "H3'1" H N N 186 DDG "H3'2" H N N 187 DDG "H2'" H N N 188 DDG "H2''" H N N 189 DDG "H1'" H N N 190 DDG H8 H N N 191 DDG H1 H N N 192 DDG H21 H N N 193 DDG H22 H N N 194 DG OP3 O N N 195 DG P P N N 196 DG OP1 O N N 197 DG OP2 O N N 198 DG "O5'" O N N 199 DG "C5'" C N N 200 DG "C4'" C N R 201 DG "O4'" O N N 202 DG "C3'" C N S 203 DG "O3'" O N N 204 DG "C2'" C N N 205 DG "C1'" C N R 206 DG N9 N Y N 207 DG C8 C Y N 208 DG N7 N Y N 209 DG C5 C Y N 210 DG C6 C N N 211 DG O6 O N N 212 DG N1 N N N 213 DG C2 C N N 214 DG N2 N N N 215 DG N3 N N N 216 DG C4 C Y N 217 DG HOP3 H N N 218 DG HOP2 H N N 219 DG "H5'" H N N 220 DG "H5''" H N N 221 DG "H4'" H N N 222 DG "H3'" H N N 223 DG "HO3'" H N N 224 DG "H2'" H N N 225 DG "H2''" H N N 226 DG "H1'" H N N 227 DG H8 H N N 228 DG H1 H N N 229 DG H21 H N N 230 DG H22 H N N 231 DG3 PG P N N 232 DG3 O1G O N N 233 DG3 O2G O N N 234 DG3 O3G O N N 235 DG3 O3B O N N 236 DG3 PB P N R 237 DG3 O1B O N N 238 DG3 O2B O N N 239 DG3 O3A O N N 240 DG3 PA P N R 241 DG3 O1A O N N 242 DG3 O2A O N N 243 DG3 "O5'" O N N 244 DG3 "C5'" C N N 245 DG3 "C4'" C N S 246 DG3 "O4'" O N N 247 DG3 "C3'" C N N 248 DG3 "C2'" C N N 249 DG3 "C1'" C N R 250 DG3 N9 N Y N 251 DG3 C8 C Y N 252 DG3 N7 N Y N 253 DG3 C5 C Y N 254 DG3 C6 C N N 255 DG3 O6 O N N 256 DG3 N1 N N N 257 DG3 C2 C N N 258 DG3 N2 N N N 259 DG3 N3 N N N 260 DG3 C4 C Y N 261 DG3 HOG2 H N N 262 DG3 HOG3 H N N 263 DG3 HOB2 H N N 264 DG3 HOA2 H N N 265 DG3 "H5'1" H N N 266 DG3 "H5'2" H N N 267 DG3 "H4'" H N N 268 DG3 "H3'1" H N N 269 DG3 "H3'2" H N N 270 DG3 "H2'1" H N N 271 DG3 "H2'2" H N N 272 DG3 "H1'" H N N 273 DG3 H8 H N N 274 DG3 HN1 H N N 275 DG3 HN21 H N N 276 DG3 HN22 H N N 277 DT OP3 O N N 278 DT P P N N 279 DT OP1 O N N 280 DT OP2 O N N 281 DT "O5'" O N N 282 DT "C5'" C N N 283 DT "C4'" C N R 284 DT "O4'" O N N 285 DT "C3'" C N S 286 DT "O3'" O N N 287 DT "C2'" C N N 288 DT "C1'" C N R 289 DT N1 N N N 290 DT C2 C N N 291 DT O2 O N N 292 DT N3 N N N 293 DT C4 C N N 294 DT O4 O N N 295 DT C5 C N N 296 DT C7 C N N 297 DT C6 C N N 298 DT HOP3 H N N 299 DT HOP2 H N N 300 DT "H5'" H N N 301 DT "H5''" H N N 302 DT "H4'" H N N 303 DT "H3'" H N N 304 DT "HO3'" H N N 305 DT "H2'" H N N 306 DT "H2''" H N N 307 DT "H1'" H N N 308 DT H3 H N N 309 DT H71 H N N 310 DT H72 H N N 311 DT H73 H N N 312 DT H6 H N N 313 GLN N N N N 314 GLN CA C N S 315 GLN C C N N 316 GLN O O N N 317 GLN CB C N N 318 GLN CG C N N 319 GLN CD C N N 320 GLN OE1 O N N 321 GLN NE2 N N N 322 GLN OXT O N N 323 GLN H H N N 324 GLN H2 H N N 325 GLN HA H N N 326 GLN HB2 H N N 327 GLN HB3 H N N 328 GLN HG2 H N N 329 GLN HG3 H N N 330 GLN HE21 H N N 331 GLN HE22 H N N 332 GLN HXT H N N 333 GLU N N N N 334 GLU CA C N S 335 GLU C C N N 336 GLU O O N N 337 GLU CB C N N 338 GLU CG C N N 339 GLU CD C N N 340 GLU OE1 O N N 341 GLU OE2 O N N 342 GLU OXT O N N 343 GLU H H N N 344 GLU H2 H N N 345 GLU HA H N N 346 GLU HB2 H N N 347 GLU HB3 H N N 348 GLU HG2 H N N 349 GLU HG3 H N N 350 GLU HE2 H N N 351 GLU HXT H N N 352 GLY N N N N 353 GLY CA C N N 354 GLY C C N N 355 GLY O O N N 356 GLY OXT O N N 357 GLY H H N N 358 GLY H2 H N N 359 GLY HA2 H N N 360 GLY HA3 H N N 361 GLY HXT H N N 362 HIS N N N N 363 HIS CA C N S 364 HIS C C N N 365 HIS O O N N 366 HIS CB C N N 367 HIS CG C Y N 368 HIS ND1 N Y N 369 HIS CD2 C Y N 370 HIS CE1 C Y N 371 HIS NE2 N Y N 372 HIS OXT O N N 373 HIS H H N N 374 HIS H2 H N N 375 HIS HA H N N 376 HIS HB2 H N N 377 HIS HB3 H N N 378 HIS HD1 H N N 379 HIS HD2 H N N 380 HIS HE1 H N N 381 HIS HE2 H N N 382 HIS HXT H N N 383 HOH O O N N 384 HOH H1 H N N 385 HOH H2 H N N 386 ILE N N N N 387 ILE CA C N S 388 ILE C C N N 389 ILE O O N N 390 ILE CB C N S 391 ILE CG1 C N N 392 ILE CG2 C N N 393 ILE CD1 C N N 394 ILE OXT O N N 395 ILE H H N N 396 ILE H2 H N N 397 ILE HA H N N 398 ILE HB H N N 399 ILE HG12 H N N 400 ILE HG13 H N N 401 ILE HG21 H N N 402 ILE HG22 H N N 403 ILE HG23 H N N 404 ILE HD11 H N N 405 ILE HD12 H N N 406 ILE HD13 H N N 407 ILE HXT H N N 408 LEU N N N N 409 LEU CA C N S 410 LEU C C N N 411 LEU O O N N 412 LEU CB C N N 413 LEU CG C N N 414 LEU CD1 C N N 415 LEU CD2 C N N 416 LEU OXT O N N 417 LEU H H N N 418 LEU H2 H N N 419 LEU HA H N N 420 LEU HB2 H N N 421 LEU HB3 H N N 422 LEU HG H N N 423 LEU HD11 H N N 424 LEU HD12 H N N 425 LEU HD13 H N N 426 LEU HD21 H N N 427 LEU HD22 H N N 428 LEU HD23 H N N 429 LEU HXT H N N 430 LYS N N N N 431 LYS CA C N S 432 LYS C C N N 433 LYS O O N N 434 LYS CB C N N 435 LYS CG C N N 436 LYS CD C N N 437 LYS CE C N N 438 LYS NZ N N N 439 LYS OXT O N N 440 LYS H H N N 441 LYS H2 H N N 442 LYS HA H N N 443 LYS HB2 H N N 444 LYS HB3 H N N 445 LYS HG2 H N N 446 LYS HG3 H N N 447 LYS HD2 H N N 448 LYS HD3 H N N 449 LYS HE2 H N N 450 LYS HE3 H N N 451 LYS HZ1 H N N 452 LYS HZ2 H N N 453 LYS HZ3 H N N 454 LYS HXT H N N 455 MET N N N N 456 MET CA C N S 457 MET C C N N 458 MET O O N N 459 MET CB C N N 460 MET CG C N N 461 MET SD S N N 462 MET CE C N N 463 MET OXT O N N 464 MET H H N N 465 MET H2 H N N 466 MET HA H N N 467 MET HB2 H N N 468 MET HB3 H N N 469 MET HG2 H N N 470 MET HG3 H N N 471 MET HE1 H N N 472 MET HE2 H N N 473 MET HE3 H N N 474 MET HXT H N N 475 MG MG MG N N 476 PHE N N N N 477 PHE CA C N S 478 PHE C C N N 479 PHE O O N N 480 PHE CB C N N 481 PHE CG C Y N 482 PHE CD1 C Y N 483 PHE CD2 C Y N 484 PHE CE1 C Y N 485 PHE CE2 C Y N 486 PHE CZ C Y N 487 PHE OXT O N N 488 PHE H H N N 489 PHE H2 H N N 490 PHE HA H N N 491 PHE HB2 H N N 492 PHE HB3 H N N 493 PHE HD1 H N N 494 PHE HD2 H N N 495 PHE HE1 H N N 496 PHE HE2 H N N 497 PHE HZ H N N 498 PHE HXT H N N 499 PRO N N N N 500 PRO CA C N S 501 PRO C C N N 502 PRO O O N N 503 PRO CB C N N 504 PRO CG C N N 505 PRO CD C N N 506 PRO OXT O N N 507 PRO H H N N 508 PRO HA H N N 509 PRO HB2 H N N 510 PRO HB3 H N N 511 PRO HG2 H N N 512 PRO HG3 H N N 513 PRO HD2 H N N 514 PRO HD3 H N N 515 PRO HXT H N N 516 SER N N N N 517 SER CA C N S 518 SER C C N N 519 SER O O N N 520 SER CB C N N 521 SER OG O N N 522 SER OXT O N N 523 SER H H N N 524 SER H2 H N N 525 SER HA H N N 526 SER HB2 H N N 527 SER HB3 H N N 528 SER HG H N N 529 SER HXT H N N 530 SO4 S S N N 531 SO4 O1 O N N 532 SO4 O2 O N N 533 SO4 O3 O N N 534 SO4 O4 O N N 535 THR N N N N 536 THR CA C N S 537 THR C C N N 538 THR O O N N 539 THR CB C N R 540 THR OG1 O N N 541 THR CG2 C N N 542 THR OXT O N N 543 THR H H N N 544 THR H2 H N N 545 THR HA H N N 546 THR HB H N N 547 THR HG1 H N N 548 THR HG21 H N N 549 THR HG22 H N N 550 THR HG23 H N N 551 THR HXT H N N 552 TRP N N N N 553 TRP CA C N S 554 TRP C C N N 555 TRP O O N N 556 TRP CB C N N 557 TRP CG C Y N 558 TRP CD1 C Y N 559 TRP CD2 C Y N 560 TRP NE1 N Y N 561 TRP CE2 C Y N 562 TRP CE3 C Y N 563 TRP CZ2 C Y N 564 TRP CZ3 C Y N 565 TRP CH2 C Y N 566 TRP OXT O N N 567 TRP H H N N 568 TRP H2 H N N 569 TRP HA H N N 570 TRP HB2 H N N 571 TRP HB3 H N N 572 TRP HD1 H N N 573 TRP HE1 H N N 574 TRP HE3 H N N 575 TRP HZ2 H N N 576 TRP HZ3 H N N 577 TRP HH2 H N N 578 TRP HXT H N N 579 TYR N N N N 580 TYR CA C N S 581 TYR C C N N 582 TYR O O N N 583 TYR CB C N N 584 TYR CG C Y N 585 TYR CD1 C Y N 586 TYR CD2 C Y N 587 TYR CE1 C Y N 588 TYR CE2 C Y N 589 TYR CZ C Y N 590 TYR OH O N N 591 TYR OXT O N N 592 TYR H H N N 593 TYR H2 H N N 594 TYR HA H N N 595 TYR HB2 H N N 596 TYR HB3 H N N 597 TYR HD1 H N N 598 TYR HD2 H N N 599 TYR HE1 H N N 600 TYR HE2 H N N 601 TYR HH H N N 602 TYR HXT H N N 603 VAL N N N N 604 VAL CA C N S 605 VAL C C N N 606 VAL O O N N 607 VAL CB C N N 608 VAL CG1 C N N 609 VAL CG2 C N N 610 VAL OXT O N N 611 VAL H H N N 612 VAL H2 H N N 613 VAL HA H N N 614 VAL HB H N N 615 VAL HG11 H N N 616 VAL HG12 H N N 617 VAL HG13 H N N 618 VAL HG21 H N N 619 VAL HG22 H N N 620 VAL HG23 H N N 621 VAL HXT H N N 622 ZN ZN ZN N N 623 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DDG OP3 P sing N N 156 DDG OP3 HOP3 sing N N 157 DDG P OP1 doub N N 158 DDG P OP2 sing N N 159 DDG P "O5'" sing N N 160 DDG OP2 HOP2 sing N N 161 DDG "O5'" "C5'" sing N N 162 DDG "C5'" "C4'" sing N N 163 DDG "C5'" "H5'" sing N N 164 DDG "C5'" "H5''" sing N N 165 DDG "C4'" "O4'" sing N N 166 DDG "C4'" "C3'" sing N N 167 DDG "C4'" "H4'" sing N N 168 DDG "O4'" "C1'" sing N N 169 DDG "C3'" "C2'" sing N N 170 DDG "C3'" "H3'1" sing N N 171 DDG "C3'" "H3'2" sing N N 172 DDG "C2'" "C1'" sing N N 173 DDG "C2'" "H2'" sing N N 174 DDG "C2'" "H2''" sing N N 175 DDG "C1'" N9 sing N N 176 DDG "C1'" "H1'" sing N N 177 DDG N9 C8 sing Y N 178 DDG N9 C4 sing Y N 179 DDG C8 N7 doub Y N 180 DDG C8 H8 sing N N 181 DDG N7 C5 sing Y N 182 DDG C5 C6 sing N N 183 DDG C5 C4 doub Y N 184 DDG C6 O6 doub N N 185 DDG C6 N1 sing N N 186 DDG N1 C2 sing N N 187 DDG N1 H1 sing N N 188 DDG C2 N2 sing N N 189 DDG C2 N3 doub N N 190 DDG N2 H21 sing N N 191 DDG N2 H22 sing N N 192 DDG N3 C4 sing N N 193 DG OP3 P sing N N 194 DG OP3 HOP3 sing N N 195 DG P OP1 doub N N 196 DG P OP2 sing N N 197 DG P "O5'" sing N N 198 DG OP2 HOP2 sing N N 199 DG "O5'" "C5'" sing N N 200 DG "C5'" "C4'" sing N N 201 DG "C5'" "H5'" sing N N 202 DG "C5'" "H5''" sing N N 203 DG "C4'" "O4'" sing N N 204 DG "C4'" "C3'" sing N N 205 DG "C4'" "H4'" sing N N 206 DG "O4'" "C1'" sing N N 207 DG "C3'" "O3'" sing N N 208 DG "C3'" "C2'" sing N N 209 DG "C3'" "H3'" sing N N 210 DG "O3'" "HO3'" sing N N 211 DG "C2'" "C1'" sing N N 212 DG "C2'" "H2'" sing N N 213 DG "C2'" "H2''" sing N N 214 DG "C1'" N9 sing N N 215 DG "C1'" "H1'" sing N N 216 DG N9 C8 sing Y N 217 DG N9 C4 sing Y N 218 DG C8 N7 doub Y N 219 DG C8 H8 sing N N 220 DG N7 C5 sing Y N 221 DG C5 C6 sing N N 222 DG C5 C4 doub Y N 223 DG C6 O6 doub N N 224 DG C6 N1 sing N N 225 DG N1 C2 sing N N 226 DG N1 H1 sing N N 227 DG C2 N2 sing N N 228 DG C2 N3 doub N N 229 DG N2 H21 sing N N 230 DG N2 H22 sing N N 231 DG N3 C4 sing N N 232 DG3 PG O1G doub N N 233 DG3 PG O2G sing N N 234 DG3 PG O3G sing N N 235 DG3 PG O3B sing N N 236 DG3 O2G HOG2 sing N N 237 DG3 O3G HOG3 sing N N 238 DG3 O3B PB sing N N 239 DG3 PB O1B doub N N 240 DG3 PB O2B sing N N 241 DG3 PB O3A sing N N 242 DG3 O2B HOB2 sing N N 243 DG3 O3A PA sing N N 244 DG3 PA O1A doub N N 245 DG3 PA O2A sing N N 246 DG3 PA "O5'" sing N N 247 DG3 O2A HOA2 sing N N 248 DG3 "O5'" "C5'" sing N N 249 DG3 "C5'" "C4'" sing N N 250 DG3 "C5'" "H5'1" sing N N 251 DG3 "C5'" "H5'2" sing N N 252 DG3 "C4'" "O4'" sing N N 253 DG3 "C4'" "C3'" sing N N 254 DG3 "C4'" "H4'" sing N N 255 DG3 "O4'" "C1'" sing N N 256 DG3 "C3'" "C2'" sing N N 257 DG3 "C3'" "H3'1" sing N N 258 DG3 "C3'" "H3'2" sing N N 259 DG3 "C2'" "C1'" sing N N 260 DG3 "C2'" "H2'1" sing N N 261 DG3 "C2'" "H2'2" sing N N 262 DG3 "C1'" N9 sing N N 263 DG3 "C1'" "H1'" sing N N 264 DG3 N9 C8 sing Y N 265 DG3 N9 C4 sing Y N 266 DG3 C8 N7 doub Y N 267 DG3 C8 H8 sing N N 268 DG3 N7 C5 sing Y N 269 DG3 C5 C6 sing N N 270 DG3 C5 C4 doub Y N 271 DG3 C6 O6 doub N N 272 DG3 C6 N1 sing N N 273 DG3 N1 C2 sing N N 274 DG3 N1 HN1 sing N N 275 DG3 C2 N2 sing N N 276 DG3 C2 N3 doub N N 277 DG3 N2 HN21 sing N N 278 DG3 N2 HN22 sing N N 279 DG3 N3 C4 sing N N 280 DT OP3 P sing N N 281 DT OP3 HOP3 sing N N 282 DT P OP1 doub N N 283 DT P OP2 sing N N 284 DT P "O5'" sing N N 285 DT OP2 HOP2 sing N N 286 DT "O5'" "C5'" sing N N 287 DT "C5'" "C4'" sing N N 288 DT "C5'" "H5'" sing N N 289 DT "C5'" "H5''" sing N N 290 DT "C4'" "O4'" sing N N 291 DT "C4'" "C3'" sing N N 292 DT "C4'" "H4'" sing N N 293 DT "O4'" "C1'" sing N N 294 DT "C3'" "O3'" sing N N 295 DT "C3'" "C2'" sing N N 296 DT "C3'" "H3'" sing N N 297 DT "O3'" "HO3'" sing N N 298 DT "C2'" "C1'" sing N N 299 DT "C2'" "H2'" sing N N 300 DT "C2'" "H2''" sing N N 301 DT "C1'" N1 sing N N 302 DT "C1'" "H1'" sing N N 303 DT N1 C2 sing N N 304 DT N1 C6 sing N N 305 DT C2 O2 doub N N 306 DT C2 N3 sing N N 307 DT N3 C4 sing N N 308 DT N3 H3 sing N N 309 DT C4 O4 doub N N 310 DT C4 C5 sing N N 311 DT C5 C7 sing N N 312 DT C5 C6 doub N N 313 DT C7 H71 sing N N 314 DT C7 H72 sing N N 315 DT C7 H73 sing N N 316 DT C6 H6 sing N N 317 GLN N CA sing N N 318 GLN N H sing N N 319 GLN N H2 sing N N 320 GLN CA C sing N N 321 GLN CA CB sing N N 322 GLN CA HA sing N N 323 GLN C O doub N N 324 GLN C OXT sing N N 325 GLN CB CG sing N N 326 GLN CB HB2 sing N N 327 GLN CB HB3 sing N N 328 GLN CG CD sing N N 329 GLN CG HG2 sing N N 330 GLN CG HG3 sing N N 331 GLN CD OE1 doub N N 332 GLN CD NE2 sing N N 333 GLN NE2 HE21 sing N N 334 GLN NE2 HE22 sing N N 335 GLN OXT HXT sing N N 336 GLU N CA sing N N 337 GLU N H sing N N 338 GLU N H2 sing N N 339 GLU CA C sing N N 340 GLU CA CB sing N N 341 GLU CA HA sing N N 342 GLU C O doub N N 343 GLU C OXT sing N N 344 GLU CB CG sing N N 345 GLU CB HB2 sing N N 346 GLU CB HB3 sing N N 347 GLU CG CD sing N N 348 GLU CG HG2 sing N N 349 GLU CG HG3 sing N N 350 GLU CD OE1 doub N N 351 GLU CD OE2 sing N N 352 GLU OE2 HE2 sing N N 353 GLU OXT HXT sing N N 354 GLY N CA sing N N 355 GLY N H sing N N 356 GLY N H2 sing N N 357 GLY CA C sing N N 358 GLY CA HA2 sing N N 359 GLY CA HA3 sing N N 360 GLY C O doub N N 361 GLY C OXT sing N N 362 GLY OXT HXT sing N N 363 HIS N CA sing N N 364 HIS N H sing N N 365 HIS N H2 sing N N 366 HIS CA C sing N N 367 HIS CA CB sing N N 368 HIS CA HA sing N N 369 HIS C O doub N N 370 HIS C OXT sing N N 371 HIS CB CG sing N N 372 HIS CB HB2 sing N N 373 HIS CB HB3 sing N N 374 HIS CG ND1 sing Y N 375 HIS CG CD2 doub Y N 376 HIS ND1 CE1 doub Y N 377 HIS ND1 HD1 sing N N 378 HIS CD2 NE2 sing Y N 379 HIS CD2 HD2 sing N N 380 HIS CE1 NE2 sing Y N 381 HIS CE1 HE1 sing N N 382 HIS NE2 HE2 sing N N 383 HIS OXT HXT sing N N 384 HOH O H1 sing N N 385 HOH O H2 sing N N 386 ILE N CA sing N N 387 ILE N H sing N N 388 ILE N H2 sing N N 389 ILE CA C sing N N 390 ILE CA CB sing N N 391 ILE CA HA sing N N 392 ILE C O doub N N 393 ILE C OXT sing N N 394 ILE CB CG1 sing N N 395 ILE CB CG2 sing N N 396 ILE CB HB sing N N 397 ILE CG1 CD1 sing N N 398 ILE CG1 HG12 sing N N 399 ILE CG1 HG13 sing N N 400 ILE CG2 HG21 sing N N 401 ILE CG2 HG22 sing N N 402 ILE CG2 HG23 sing N N 403 ILE CD1 HD11 sing N N 404 ILE CD1 HD12 sing N N 405 ILE CD1 HD13 sing N N 406 ILE OXT HXT sing N N 407 LEU N CA sing N N 408 LEU N H sing N N 409 LEU N H2 sing N N 410 LEU CA C sing N N 411 LEU CA CB sing N N 412 LEU CA HA sing N N 413 LEU C O doub N N 414 LEU C OXT sing N N 415 LEU CB CG sing N N 416 LEU CB HB2 sing N N 417 LEU CB HB3 sing N N 418 LEU CG CD1 sing N N 419 LEU CG CD2 sing N N 420 LEU CG HG sing N N 421 LEU CD1 HD11 sing N N 422 LEU CD1 HD12 sing N N 423 LEU CD1 HD13 sing N N 424 LEU CD2 HD21 sing N N 425 LEU CD2 HD22 sing N N 426 LEU CD2 HD23 sing N N 427 LEU OXT HXT sing N N 428 LYS N CA sing N N 429 LYS N H sing N N 430 LYS N H2 sing N N 431 LYS CA C sing N N 432 LYS CA CB sing N N 433 LYS CA HA sing N N 434 LYS C O doub N N 435 LYS C OXT sing N N 436 LYS CB CG sing N N 437 LYS CB HB2 sing N N 438 LYS CB HB3 sing N N 439 LYS CG CD sing N N 440 LYS CG HG2 sing N N 441 LYS CG HG3 sing N N 442 LYS CD CE sing N N 443 LYS CD HD2 sing N N 444 LYS CD HD3 sing N N 445 LYS CE NZ sing N N 446 LYS CE HE2 sing N N 447 LYS CE HE3 sing N N 448 LYS NZ HZ1 sing N N 449 LYS NZ HZ2 sing N N 450 LYS NZ HZ3 sing N N 451 LYS OXT HXT sing N N 452 MET N CA sing N N 453 MET N H sing N N 454 MET N H2 sing N N 455 MET CA C sing N N 456 MET CA CB sing N N 457 MET CA HA sing N N 458 MET C O doub N N 459 MET C OXT sing N N 460 MET CB CG sing N N 461 MET CB HB2 sing N N 462 MET CB HB3 sing N N 463 MET CG SD sing N N 464 MET CG HG2 sing N N 465 MET CG HG3 sing N N 466 MET SD CE sing N N 467 MET CE HE1 sing N N 468 MET CE HE2 sing N N 469 MET CE HE3 sing N N 470 MET OXT HXT sing N N 471 PHE N CA sing N N 472 PHE N H sing N N 473 PHE N H2 sing N N 474 PHE CA C sing N N 475 PHE CA CB sing N N 476 PHE CA HA sing N N 477 PHE C O doub N N 478 PHE C OXT sing N N 479 PHE CB CG sing N N 480 PHE CB HB2 sing N N 481 PHE CB HB3 sing N N 482 PHE CG CD1 doub Y N 483 PHE CG CD2 sing Y N 484 PHE CD1 CE1 sing Y N 485 PHE CD1 HD1 sing N N 486 PHE CD2 CE2 doub Y N 487 PHE CD2 HD2 sing N N 488 PHE CE1 CZ doub Y N 489 PHE CE1 HE1 sing N N 490 PHE CE2 CZ sing Y N 491 PHE CE2 HE2 sing N N 492 PHE CZ HZ sing N N 493 PHE OXT HXT sing N N 494 PRO N CA sing N N 495 PRO N CD sing N N 496 PRO N H sing N N 497 PRO CA C sing N N 498 PRO CA CB sing N N 499 PRO CA HA sing N N 500 PRO C O doub N N 501 PRO C OXT sing N N 502 PRO CB CG sing N N 503 PRO CB HB2 sing N N 504 PRO CB HB3 sing N N 505 PRO CG CD sing N N 506 PRO CG HG2 sing N N 507 PRO CG HG3 sing N N 508 PRO CD HD2 sing N N 509 PRO CD HD3 sing N N 510 PRO OXT HXT sing N N 511 SER N CA sing N N 512 SER N H sing N N 513 SER N H2 sing N N 514 SER CA C sing N N 515 SER CA CB sing N N 516 SER CA HA sing N N 517 SER C O doub N N 518 SER C OXT sing N N 519 SER CB OG sing N N 520 SER CB HB2 sing N N 521 SER CB HB3 sing N N 522 SER OG HG sing N N 523 SER OXT HXT sing N N 524 SO4 S O1 doub N N 525 SO4 S O2 doub N N 526 SO4 S O3 sing N N 527 SO4 S O4 sing N N 528 THR N CA sing N N 529 THR N H sing N N 530 THR N H2 sing N N 531 THR CA C sing N N 532 THR CA CB sing N N 533 THR CA HA sing N N 534 THR C O doub N N 535 THR C OXT sing N N 536 THR CB OG1 sing N N 537 THR CB CG2 sing N N 538 THR CB HB sing N N 539 THR OG1 HG1 sing N N 540 THR CG2 HG21 sing N N 541 THR CG2 HG22 sing N N 542 THR CG2 HG23 sing N N 543 THR OXT HXT sing N N 544 TRP N CA sing N N 545 TRP N H sing N N 546 TRP N H2 sing N N 547 TRP CA C sing N N 548 TRP CA CB sing N N 549 TRP CA HA sing N N 550 TRP C O doub N N 551 TRP C OXT sing N N 552 TRP CB CG sing N N 553 TRP CB HB2 sing N N 554 TRP CB HB3 sing N N 555 TRP CG CD1 doub Y N 556 TRP CG CD2 sing Y N 557 TRP CD1 NE1 sing Y N 558 TRP CD1 HD1 sing N N 559 TRP CD2 CE2 doub Y N 560 TRP CD2 CE3 sing Y N 561 TRP NE1 CE2 sing Y N 562 TRP NE1 HE1 sing N N 563 TRP CE2 CZ2 sing Y N 564 TRP CE3 CZ3 doub Y N 565 TRP CE3 HE3 sing N N 566 TRP CZ2 CH2 doub Y N 567 TRP CZ2 HZ2 sing N N 568 TRP CZ3 CH2 sing Y N 569 TRP CZ3 HZ3 sing N N 570 TRP CH2 HH2 sing N N 571 TRP OXT HXT sing N N 572 TYR N CA sing N N 573 TYR N H sing N N 574 TYR N H2 sing N N 575 TYR CA C sing N N 576 TYR CA CB sing N N 577 TYR CA HA sing N N 578 TYR C O doub N N 579 TYR C OXT sing N N 580 TYR CB CG sing N N 581 TYR CB HB2 sing N N 582 TYR CB HB3 sing N N 583 TYR CG CD1 doub Y N 584 TYR CG CD2 sing Y N 585 TYR CD1 CE1 sing Y N 586 TYR CD1 HD1 sing N N 587 TYR CD2 CE2 doub Y N 588 TYR CD2 HD2 sing N N 589 TYR CE1 CZ doub Y N 590 TYR CE1 HE1 sing N N 591 TYR CE2 CZ sing Y N 592 TYR CE2 HE2 sing N N 593 TYR CZ OH sing N N 594 TYR OH HH sing N N 595 TYR OXT HXT sing N N 596 VAL N CA sing N N 597 VAL N H sing N N 598 VAL N H2 sing N N 599 VAL CA C sing N N 600 VAL CA CB sing N N 601 VAL CA HA sing N N 602 VAL C O doub N N 603 VAL C OXT sing N N 604 VAL CB CG1 sing N N 605 VAL CB CG2 sing N N 606 VAL CB HB sing N N 607 VAL CG1 HG11 sing N N 608 VAL CG1 HG12 sing N N 609 VAL CG1 HG13 sing N N 610 VAL CG2 HG21 sing N N 611 VAL CG2 HG22 sing N N 612 VAL CG2 HG23 sing N N 613 VAL OXT HXT sing N N 614 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3AU6 'double helix' 3AU6 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 11 1_555 0.756 -0.409 0.444 -23.880 10.595 -0.580 1 P_DC1:DG11_T P 1 ? T 11 ? 19 1 1 B DA 2 1_555 C DT 10 1_555 -0.688 -0.105 -0.305 -4.270 -12.538 -13.348 2 P_DA2:DT10_T P 2 ? T 10 ? 20 1 1 B DG 3 1_555 C DC 9 1_555 0.706 0.011 0.148 5.935 -11.177 -10.617 3 P_DG3:DC9_T P 3 ? T 9 ? 19 1 1 B DT 4 1_555 C DA 8 1_555 0.256 -0.169 -0.158 -2.220 -4.941 -5.552 4 P_DT4:DA8_T P 4 ? T 8 ? 20 1 1 B DA 5 1_555 C DT 7 1_555 -0.133 -0.380 -0.029 5.779 -14.249 0.267 5 P_DA5:DT7_T P 5 ? T 7 ? 20 1 1 B DT 6 1_555 C DA 6 1_555 0.137 -0.378 -0.300 14.815 -16.046 -1.753 6 P_DT6:DA6_T P 6 ? T 6 ? 20 1 1 B DDG 7 1_555 C DC 5 1_555 1.510 0.220 1.181 20.722 -6.472 -7.582 7 P_DDG7:DC5_T P 7 ? T 5 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 11 1_555 B DA 2 1_555 C DT 10 1_555 -1.908 -0.491 2.788 8.006 -1.312 19.923 -0.921 7.526 1.912 -3.604 -21.996 21.496 1 PP_DC1DA2:DT10DG11_TT P 1 ? T 11 ? P 2 ? T 10 ? 1 B DA 2 1_555 C DT 10 1_555 B DG 3 1_555 C DC 9 1_555 -0.018 -0.276 2.927 -6.402 6.942 42.843 -0.958 -0.518 2.826 9.367 8.640 43.823 2 PP_DA2DG3:DC9DT10_TT P 2 ? T 10 ? P 3 ? T 9 ? 1 B DG 3 1_555 C DC 9 1_555 B DT 4 1_555 C DA 8 1_555 0.600 -0.498 3.582 0.234 -9.376 32.286 0.856 -0.996 3.586 -16.433 -0.411 33.586 3 PP_DG3DT4:DA8DC9_TT P 3 ? T 9 ? P 4 ? T 8 ? 1 B DT 4 1_555 C DA 8 1_555 B DA 5 1_555 C DT 7 1_555 0.686 0.219 3.114 1.237 0.948 37.126 0.222 -0.919 3.139 1.488 -1.942 37.158 4 PP_DT4DA5:DT7DA8_TT P 4 ? T 8 ? P 5 ? T 7 ? 1 B DA 5 1_555 C DT 7 1_555 B DT 6 1_555 C DA 6 1_555 0.142 -0.783 2.939 4.162 5.049 35.090 -1.926 0.301 2.801 8.285 -6.830 35.676 5 PP_DA5DT6:DA6DT7_TT P 5 ? T 7 ? P 6 ? T 6 ? 1 B DT 6 1_555 C DA 6 1_555 B DDG 7 1_555 C DC 5 1_555 -0.228 0.477 3.267 -6.100 3.700 46.309 0.290 -0.224 3.296 4.672 7.703 46.825 6 PP_DT6DDG7:DC5DA6_TT P 6 ? T 6 ? P 7 ? T 5 ? # _atom_sites.entry_id 3AU6 _atom_sites.fract_transf_matrix[1][1] 0.012474 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012474 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003724 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL MG N O P S ZN # loop_