HEADER RNA BINDING PROTEIN 31-JAN-11 3AU7 TITLE CRYSTAL STRUCTURE OF THE ZRD-DELETED MUTANT OF TIAS IN COMPLEX WITH TITLE 2 AGMATINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TIAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: AF_2259; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ATP HYDROLYSIS, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.NUMATA,T.OSAWA REVDAT 3 01-NOV-23 3AU7 1 REMARK SEQADV SHEET REVDAT 2 19-JUN-13 3AU7 1 JRNL REVDAT 1 19-OCT-11 3AU7 0 JRNL AUTH T.OSAWA,S.KIMURA,N.TERASAKA,H.INANAGA,T.SUZUKI,T.NUMATA JRNL TITL STRUCTURAL BASIS OF TRNA AGMATINYLATION ESSENTIAL FOR AUA JRNL TITL 2 CODON DECODING JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 1275 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 22002223 JRNL DOI 10.1038/NSMB.2144 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 77944.130 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 759 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2310 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 110 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2819 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.88000 REMARK 3 B22 (A**2) : 2.88000 REMARK 3 B33 (A**2) : -5.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.380 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.390 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.190 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 39.99 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : AGM_PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : AGM_TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3AU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000029699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NUMERIC LINK TYPE SI(111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15338 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.80 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ID 3AMT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.1% PEG 4000, 18% 2-PROPANOL, 0.09M REMARK 280 SODIUM CITRATE PH5.6, 0.5M SODIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.15750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 91.15750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.15750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 91.15750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 91.15750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 91.15750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ASP A 9 REMARK 465 THR A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 MET A 16 REMARK 465 CYS A 17 REMARK 465 THR A 18 REMARK 465 PRO A 50 REMARK 465 TYR A 51 REMARK 465 LYS A 52 REMARK 465 THR A 53 REMARK 465 ARG A 54 REMARK 465 GLY A 55 REMARK 465 HIS A 82 REMARK 465 ALA A 83 REMARK 465 MET A 84 REMARK 465 LEU A 85 REMARK 465 ASP A 86 REMARK 465 ASP A 87 REMARK 465 GLU A 88 REMARK 465 LYS A 89 REMARK 465 THR A 90 REMARK 465 ASN A 91 REMARK 465 GLY A 346 REMARK 465 SER A 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 56 CG OD1 ND2 REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 ASP A 73 CG OD1 OD2 REMARK 470 ILE A 80 CG1 CG2 CD1 REMARK 470 HIS A 136 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 GLU A 343 CG CD OE1 OE2 REMARK 470 PHE A 419 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 269 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 113.65 -39.63 REMARK 500 VAL A 74 -77.03 -60.01 REMARK 500 ILE A 80 61.14 -115.65 REMARK 500 LYS A 137 -134.78 58.92 REMARK 500 GLU A 167 -19.42 -49.55 REMARK 500 PRO A 209 6.45 -64.89 REMARK 500 ASP A 237 -87.41 -84.62 REMARK 500 LYS A 305 -126.27 48.40 REMARK 500 ALA A 342 123.39 -39.43 REMARK 500 GLU A 343 88.67 -69.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG2 A 7011 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AMT RELATED DB: PDB REMARK 900 RELATED ID: 3AMU RELATED DB: PDB DBREF 3AU7 A 1 420 UNP O28025 O28025_ARCFU 1 420 SEQADV 3AU7 MET A -19 UNP O28025 EXPRESSION TAG SEQADV 3AU7 GLY A -18 UNP O28025 EXPRESSION TAG SEQADV 3AU7 SER A -17 UNP O28025 EXPRESSION TAG SEQADV 3AU7 SER A -16 UNP O28025 EXPRESSION TAG SEQADV 3AU7 HIS A -15 UNP O28025 EXPRESSION TAG SEQADV 3AU7 HIS A -14 UNP O28025 EXPRESSION TAG SEQADV 3AU7 HIS A -13 UNP O28025 EXPRESSION TAG SEQADV 3AU7 HIS A -12 UNP O28025 EXPRESSION TAG SEQADV 3AU7 HIS A -11 UNP O28025 EXPRESSION TAG SEQADV 3AU7 HIS A -10 UNP O28025 EXPRESSION TAG SEQADV 3AU7 SER A -9 UNP O28025 EXPRESSION TAG SEQADV 3AU7 SER A -8 UNP O28025 EXPRESSION TAG SEQADV 3AU7 GLY A -7 UNP O28025 EXPRESSION TAG SEQADV 3AU7 LEU A -6 UNP O28025 EXPRESSION TAG SEQADV 3AU7 VAL A -5 UNP O28025 EXPRESSION TAG SEQADV 3AU7 PRO A -4 UNP O28025 EXPRESSION TAG SEQADV 3AU7 ARG A -3 UNP O28025 EXPRESSION TAG SEQADV 3AU7 GLY A -2 UNP O28025 EXPRESSION TAG SEQADV 3AU7 SER A -1 UNP O28025 EXPRESSION TAG SEQADV 3AU7 HIS A 0 UNP O28025 EXPRESSION TAG SEQADV 3AU7 A UNP O28025 ILE 344 DELETION SEQADV 3AU7 A UNP O28025 TRP 345 DELETION SEQADV 3AU7 A UNP O28025 VAL 346 DELETION SEQADV 3AU7 A UNP O28025 GLU 347 DELETION SEQADV 3AU7 A UNP O28025 LYS 348 DELETION SEQADV 3AU7 A UNP O28025 ASN 349 DELETION SEQADV 3AU7 A UNP O28025 PRO 350 DELETION SEQADV 3AU7 A UNP O28025 ILE 351 DELETION SEQADV 3AU7 A UNP O28025 CYS 352 DELETION SEQADV 3AU7 A UNP O28025 PRO 353 DELETION SEQADV 3AU7 A UNP O28025 SER 354 DELETION SEQADV 3AU7 A UNP O28025 CYS 355 DELETION SEQADV 3AU7 A UNP O28025 GLY 356 DELETION SEQADV 3AU7 A UNP O28025 ARG 357 DELETION SEQADV 3AU7 A UNP O28025 ARG 358 DELETION SEQADV 3AU7 A UNP O28025 MET 359 DELETION SEQADV 3AU7 A UNP O28025 GLU 360 DELETION SEQADV 3AU7 A UNP O28025 SER 361 DELETION SEQADV 3AU7 A UNP O28025 ALA 362 DELETION SEQADV 3AU7 A UNP O28025 GLY 363 DELETION SEQADV 3AU7 A UNP O28025 ARG 364 DELETION SEQADV 3AU7 A UNP O28025 GLY 365 DELETION SEQADV 3AU7 A UNP O28025 GLN 366 DELETION SEQADV 3AU7 A UNP O28025 GLY 367 DELETION SEQADV 3AU7 A UNP O28025 PHE 368 DELETION SEQADV 3AU7 A UNP O28025 ARG 369 DELETION SEQADV 3AU7 A UNP O28025 CYS 370 DELETION SEQADV 3AU7 A UNP O28025 LYS 371 DELETION SEQADV 3AU7 A UNP O28025 LYS 372 DELETION SEQADV 3AU7 A UNP O28025 CYS 373 DELETION SEQADV 3AU7 A UNP O28025 ARG 374 DELETION SEQADV 3AU7 A UNP O28025 THR 375 DELETION SEQADV 3AU7 A UNP O28025 LYS 376 DELETION SEQADV 3AU7 A UNP O28025 ALA 377 DELETION SEQADV 3AU7 A UNP O28025 ASP 378 DELETION SEQADV 3AU7 A UNP O28025 GLU 379 DELETION SEQADV 3AU7 A UNP O28025 LYS 380 DELETION SEQADV 3AU7 A UNP O28025 LEU 381 DELETION SEQADV 3AU7 A UNP O28025 ARG 382 DELETION SEQADV 3AU7 A UNP O28025 GLU 383 DELETION SEQADV 3AU7 A UNP O28025 LYS 384 DELETION SEQADV 3AU7 A UNP O28025 VAL 385 DELETION SEQADV 3AU7 GLY A 344 UNP O28025 LINKER SEQADV 3AU7 SER A 345 UNP O28025 LINKER SEQADV 3AU7 GLY A 346 UNP O28025 LINKER SEQADV 3AU7 SER A 347 UNP O28025 LINKER SEQRES 1 A 402 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 402 LEU VAL PRO ARG GLY SER HIS MET ARG VAL TRP VAL GLY SEQRES 3 A 402 ILE ASP ASP THR ASP SER SER ARG GLY MET CYS THR THR SEQRES 4 A 402 TYR LEU ALA VAL LEU ALA MET GLU ARG VAL GLU ARG GLU SEQRES 5 A 402 LEU GLY LYS VAL ILE GLY PHE PRO ARG LEU ILE ARG LEU SEQRES 6 A 402 ASN PRO THR ILE PRO TYR LYS THR ARG GLY ASN GLY ALA SEQRES 7 A 402 VAL SER PHE LEU VAL GLU VAL ASP ASP VAL GLY GLU LEU SEQRES 8 A 402 VAL ASP VAL VAL ASN GLU VAL ILE ILE GLU HIS ALA MET SEQRES 9 A 402 LEU ASP ASP GLU LYS THR ASN PRO GLY ALA VAL PHE VAL SEQRES 10 A 402 ASP GLU GLU LEU ALA VAL LYS LEU LYS PRO PHE ALA ASP SEQRES 11 A 402 LYS ALA ILE LYS ASP VAL LEU GLN ILE ASP GLU ALA LEU SEQRES 12 A 402 PHE VAL ILE GLY LYS TYR PHE ILE PRO HIS LEU ARG HIS SEQRES 13 A 402 LYS LYS GLY ARG GLY LEU ILE GLY ALA LEU ALA ALA VAL SEQRES 14 A 402 GLY ALA GLU LEU GLU ASP PHE THR LEU GLU LEU ILE ALA SEQRES 15 A 402 TYR ARG TYR PRO GLU ARG PHE GLY THR GLU ARG GLU TYR SEQRES 16 A 402 ASP GLU GLU SER PHE PHE ASP MET ASP TYR GLU LEU TYR SEQRES 17 A 402 PRO GLN THR PHE ASP ASN VAL ASP TRP CYS ASN ASP VAL SEQRES 18 A 402 VAL VAL CYS ILE PRO ASN THR PRO CYS PRO VAL LEU TYR SEQRES 19 A 402 GLY ILE ARG GLY GLU SER VAL GLU ALA LEU TYR LYS ALA SEQRES 20 A 402 MET GLU SER VAL LYS THR GLU PRO VAL ASP ARG ARG MET SEQRES 21 A 402 ILE PHE VAL THR ASN HIS ALA THR ASP MET HIS LEU ILE SEQRES 22 A 402 GLY GLU GLU GLU VAL HIS ARG LEU GLU ASN TYR ARG SER SEQRES 23 A 402 TYR ARG LEU ARG GLY ARG VAL THR LEU GLU PRO TYR ASP SEQRES 24 A 402 ILE GLU GLY GLY HIS VAL PHE PHE GLU ILE ASP THR LYS SEQRES 25 A 402 PHE GLY SER VAL LYS CYS ALA ALA PHE GLU PRO THR LYS SEQRES 26 A 402 GLN PHE ARG ASN VAL ILE ARG LEU LEU ARG LYS GLY ASP SEQRES 27 A 402 VAL VAL GLU VAL TYR GLY SER MET LYS LYS ASP THR ILE SEQRES 28 A 402 ASN LEU GLU LYS ILE GLN ILE VAL GLU LEU ALA GLU GLY SEQRES 29 A 402 SER GLY SER GLU ARG GLU LEU GLN PRO GLY PHE TYR GLU SEQRES 30 A 402 VAL PRO PRO SER ALA ARG ARG HIS LEU SER LYS PRO LEU SEQRES 31 A 402 ILE ARG MET ASN VAL GLU GLY ARG HIS ILE PHE ARG HET AG2 A7011 9 HETNAM AG2 AGMATINE HETSYN AG2 (4-AMINOBUTYL)GUANIDINE FORMUL 2 AG2 C5 H14 N4 FORMUL 3 HOH *18(H2 O) HELIX 1 1 THR A 19 LEU A 33 1 15 HELIX 2 2 ASP A 67 ILE A 79 1 13 HELIX 3 3 GLU A 99 VAL A 103 1 5 HELIX 4 4 LEU A 105 ASP A 115 1 11 HELIX 5 5 GLN A 118 TYR A 129 1 12 HELIX 6 6 ARG A 140 ALA A 151 1 12 HELIX 7 7 TYR A 165 PHE A 169 5 5 HELIX 8 8 ASP A 176 TYR A 188 1 13 HELIX 9 9 SER A 220 VAL A 231 1 12 HELIX 10 10 GLU A 256 VAL A 258 5 3 HELIX 11 11 PHE A 301 LYS A 305 5 5 HELIX 12 12 GLN A 306 ARG A 312 1 7 SHEET 1 A 8 HIS A 133 LEU A 134 0 SHEET 2 A 8 ALA A 94 ASP A 98 -1 N ALA A 94 O LEU A 134 SHEET 3 A 8 MET A 1 ILE A 7 -1 N TRP A 4 O VAL A 97 SHEET 4 A 8 GLY A 57 VAL A 65 -1 O VAL A 65 N MET A 1 SHEET 5 A 8 LYS A 35 ARG A 44 -1 N ILE A 43 O ALA A 58 SHEET 6 A 8 ARG A 239 THR A 244 1 O VAL A 243 N LEU A 42 SHEET 7 A 8 THR A 157 TYR A 163 -1 N GLU A 159 O PHE A 242 SHEET 8 A 8 VAL A 212 GLY A 218 -1 O ILE A 216 N LEU A 160 SHEET 1 B 5 LEU A 252 GLY A 254 0 SHEET 2 B 5 SER A 266 ILE A 280 1 O SER A 266 N ILE A 253 SHEET 3 B 5 HIS A 284 THR A 291 -1 O ASP A 290 N ARG A 272 SHEET 4 B 5 GLY A 294 ALA A 300 -1 O CYS A 298 N PHE A 287 SHEET 5 B 5 THR A 330 GLU A 340 1 O ILE A 331 N LYS A 297 SHEET 1 C 4 LEU A 252 GLY A 254 0 SHEET 2 C 4 SER A 266 ILE A 280 1 O SER A 266 N ILE A 253 SHEET 3 C 4 VAL A 319 LYS A 327 -1 O VAL A 320 N GLY A 271 SHEET 4 C 4 THR A 330 GLU A 340 -1 O ASN A 332 N SER A 325 CISPEP 1 TYR A 188 PRO A 189 0 -0.10 SITE 1 AC1 8 ASP A 193 ASN A 194 VAL A 203 GLY A 215 SITE 2 AC1 8 ARG A 217 PRO A 398 SER A 399 ARG A 401 CRYST1 94.179 94.179 182.315 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010618 0.006130 0.000000 0.00000 SCALE2 0.000000 0.012261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005485 0.00000