data_3AUF # _entry.id 3AUF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3AUF RCSB RCSB029707 WWPDB D_1000029707 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id RSGI-syt001002794.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3AUF _pdbx_database_status.recvd_initial_deposition_date 2011-02-03 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kanagawa, M.' 1 'Baba, S.' 2 'Nagira, T.' 3 'Kuramitsu, S.' 4 'Yokoyama, S.' 5 'Sampei, G.' 6 'Kawai, G.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Structures and reaction mechanisms of the two related enzymes, PurN and PurU.' _citation.journal_abbrev J.Biochem. _citation.journal_volume 154 _citation.page_first 569 _citation.page_last 579 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country JP _citation.journal_id_ISSN 0021-924X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24108189 _citation.pdbx_database_id_DOI 10.1093/jb/mvt090 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sampei, G.' 1 primary 'Kanagawa, M.' 2 primary 'Baba, S.' 3 primary 'Shimasaki, T.' 4 primary 'Taka, H.' 5 primary 'Mitsui, S.' 6 primary 'Fujiwara, S.' 7 primary 'Yanagida, Y.' 8 primary 'Kusano, M.' 9 primary 'Suzuki, S.' 10 primary 'Terao, K.' 11 primary 'Kawai, H.' 12 primary 'Fukai, Y.' 13 primary 'Nakagawa, N.' 14 primary 'Ebihara, A.' 15 primary 'Kuramitsu, S.' 16 primary 'Yokoyama, S.' 17 primary 'Kawai, G.' 18 # _cell.entry_id 3AUF _cell.length_a 85.316 _cell.length_b 85.316 _cell.length_c 58.019 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3AUF _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glycinamide ribonucleotide transformylase 1' 25045.764 1 ? ? ? ? 2 water nat water 18.015 91 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Phosphoribosylglycinamide formyltransferase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGENLYFQGHMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDP AAYPSRTAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCTVHF VTAGVDEGPIILQAAVPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAEGRLVIEGRRVRILDRAEAPRG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGENLYFQGHMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDP AAYPSRTAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCTVHF VTAGVDEGPIILQAAVPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAEGRLVIEGRRVRILDRAEAPRG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier RSGI-syt001002794.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 GLU n 1 15 ASN n 1 16 LEU n 1 17 TYR n 1 18 PHE n 1 19 GLN n 1 20 GLY n 1 21 HIS n 1 22 MET n 1 23 ILE n 1 24 ARG n 1 25 ILE n 1 26 GLY n 1 27 VAL n 1 28 LEU n 1 29 ILE n 1 30 SER n 1 31 GLY n 1 32 SER n 1 33 GLY n 1 34 THR n 1 35 ASN n 1 36 LEU n 1 37 GLN n 1 38 ALA n 1 39 ILE n 1 40 LEU n 1 41 ASP n 1 42 GLY n 1 43 CYS n 1 44 ARG n 1 45 GLU n 1 46 GLY n 1 47 ARG n 1 48 ILE n 1 49 PRO n 1 50 GLY n 1 51 ARG n 1 52 VAL n 1 53 ALA n 1 54 VAL n 1 55 VAL n 1 56 ILE n 1 57 SER n 1 58 ASP n 1 59 ARG n 1 60 ALA n 1 61 ASP n 1 62 ALA n 1 63 TYR n 1 64 GLY n 1 65 LEU n 1 66 GLU n 1 67 ARG n 1 68 ALA n 1 69 ARG n 1 70 ARG n 1 71 ALA n 1 72 GLY n 1 73 VAL n 1 74 ASP n 1 75 ALA n 1 76 LEU n 1 77 HIS n 1 78 MET n 1 79 ASP n 1 80 PRO n 1 81 ALA n 1 82 ALA n 1 83 TYR n 1 84 PRO n 1 85 SER n 1 86 ARG n 1 87 THR n 1 88 ALA n 1 89 PHE n 1 90 ASP n 1 91 ALA n 1 92 ALA n 1 93 LEU n 1 94 ALA n 1 95 GLU n 1 96 ARG n 1 97 LEU n 1 98 GLN n 1 99 ALA n 1 100 TYR n 1 101 GLY n 1 102 VAL n 1 103 ASP n 1 104 LEU n 1 105 VAL n 1 106 CYS n 1 107 LEU n 1 108 ALA n 1 109 GLY n 1 110 TYR n 1 111 MET n 1 112 ARG n 1 113 LEU n 1 114 VAL n 1 115 ARG n 1 116 GLY n 1 117 PRO n 1 118 MET n 1 119 LEU n 1 120 THR n 1 121 ALA n 1 122 PHE n 1 123 PRO n 1 124 ASN n 1 125 ARG n 1 126 ILE n 1 127 LEU n 1 128 ASN n 1 129 ILE n 1 130 HIS n 1 131 PRO n 1 132 SER n 1 133 LEU n 1 134 LEU n 1 135 PRO n 1 136 ALA n 1 137 PHE n 1 138 PRO n 1 139 GLY n 1 140 LEU n 1 141 GLU n 1 142 ALA n 1 143 GLN n 1 144 ARG n 1 145 GLN n 1 146 ALA n 1 147 LEU n 1 148 GLU n 1 149 HIS n 1 150 GLY n 1 151 VAL n 1 152 LYS n 1 153 VAL n 1 154 ALA n 1 155 GLY n 1 156 CYS n 1 157 THR n 1 158 VAL n 1 159 HIS n 1 160 PHE n 1 161 VAL n 1 162 THR n 1 163 ALA n 1 164 GLY n 1 165 VAL n 1 166 ASP n 1 167 GLU n 1 168 GLY n 1 169 PRO n 1 170 ILE n 1 171 ILE n 1 172 LEU n 1 173 GLN n 1 174 ALA n 1 175 ALA n 1 176 VAL n 1 177 PRO n 1 178 VAL n 1 179 LEU n 1 180 GLU n 1 181 GLY n 1 182 ASP n 1 183 THR n 1 184 VAL n 1 185 GLU n 1 186 ASP n 1 187 LEU n 1 188 ARG n 1 189 ARG n 1 190 ARG n 1 191 ILE n 1 192 LEU n 1 193 ALA n 1 194 GLU n 1 195 GLU n 1 196 HIS n 1 197 ARG n 1 198 ILE n 1 199 TYR n 1 200 PRO n 1 201 GLU n 1 202 ALA n 1 203 ILE n 1 204 ARG n 1 205 LEU n 1 206 PHE n 1 207 ALA n 1 208 GLU n 1 209 GLY n 1 210 ARG n 1 211 LEU n 1 212 VAL n 1 213 ILE n 1 214 GLU n 1 215 GLY n 1 216 ARG n 1 217 ARG n 1 218 VAL n 1 219 ARG n 1 220 ILE n 1 221 LEU n 1 222 ASP n 1 223 ARG n 1 224 ALA n 1 225 GLU n 1 226 ALA n 1 227 PRO n 1 228 ARG n 1 229 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PurN _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Symbiobacterium toebii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 120580 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-HisTEV _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code E5RXD0_9FIRM _struct_ref.pdbx_db_accession E5RXD0 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYG VDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCTVHFVTAGVDEGPIILQAAVPVLEG DTVEDLRRRILAEEHRIYPEAIRLFAEGRLVIEGRRVRILDRAEAPRG ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3AUF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 229 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession E5RXD0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 208 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 208 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3AUF MET A 1 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -21 1 1 3AUF GLY A 2 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -20 2 1 3AUF SER A 3 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -19 3 1 3AUF SER A 4 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -18 4 1 3AUF HIS A 5 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -17 5 1 3AUF HIS A 6 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -16 6 1 3AUF HIS A 7 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -15 7 1 3AUF HIS A 8 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -14 8 1 3AUF HIS A 9 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -13 9 1 3AUF HIS A 10 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -12 10 1 3AUF SER A 11 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -11 11 1 3AUF SER A 12 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -10 12 1 3AUF GLY A 13 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -9 13 1 3AUF GLU A 14 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -8 14 1 3AUF ASN A 15 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -7 15 1 3AUF LEU A 16 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -6 16 1 3AUF TYR A 17 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -5 17 1 3AUF PHE A 18 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -4 18 1 3AUF GLN A 19 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -3 19 1 3AUF GLY A 20 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -2 20 1 3AUF HIS A 21 ? UNP E5RXD0 ? ? 'EXPRESSION TAG' -1 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3AUF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '0.7M Magnesium Formate, 0.1M Sodium Acetate pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2007-03-29 _diffrn_detector.details 'Toroidal Mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Fixed exit Si 111 double crystal monochromater' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3AUF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.07 _reflns.number_obs 28757 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 6.6 _reflns.pdbx_redundancy 5.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.07 _reflns_shell.d_res_low 2.14 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.213 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2888 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3AUF _refine.ls_number_reflns_obs 15142 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1539530.17 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.63 _refine.ls_d_res_high 2.07 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.246 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 1533 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 17.6 _refine.aniso_B[1][1] 1.65 _refine.aniso_B[2][2] 1.65 _refine.aniso_B[3][3] -3.29 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.4 _refine.solvent_model_param_bsol 39.3822 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'PDB ENTRY 1JKX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3AUF _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.10 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.29 _refine_analyze.Luzzati_sigma_a_free 0.15 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1623 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 1714 _refine_hist.d_res_high 2.07 _refine_hist.d_res_low 45.63 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.76 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.07 _refine_ls_shell.d_res_low 2.20 _refine_ls_shell.number_reflns_R_work 2210 _refine_ls_shell.R_factor_R_work 0.201 _refine_ls_shell.percent_reflns_obs 98.7 _refine_ls_shell.R_factor_R_free 0.247 _refine_ls_shell.R_factor_R_free_error 0.016 _refine_ls_shell.percent_reflns_R_free 10.1 _refine_ls_shell.number_reflns_R_free 247 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top # _struct.entry_id 3AUF _struct.title 'Crystal structure of glycinamide ribonucleotide transformylase 1 from Symbiobacterium toebii' _struct.pdbx_descriptor 'Phosphoribosylglycinamide formyltransferase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3AUF _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Rossmann fold, transformylase, folate binding, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 33 ? GLU A 45 ? GLY A 12 GLU A 24 1 ? 13 HELX_P HELX_P2 2 ALA A 62 ? ALA A 71 ? ALA A 41 ALA A 50 1 ? 10 HELX_P HELX_P3 3 ASP A 79 ? TYR A 83 ? ASP A 58 TYR A 62 5 ? 5 HELX_P HELX_P4 4 SER A 85 ? TYR A 100 ? SER A 64 TYR A 79 1 ? 16 HELX_P HELX_P5 5 ARG A 115 ? PHE A 122 ? ARG A 94 PHE A 101 1 ? 8 HELX_P HELX_P6 6 GLU A 141 ? GLY A 150 ? GLU A 120 GLY A 129 1 ? 10 HELX_P HELX_P7 7 THR A 183 ? GLU A 208 ? THR A 162 GLU A 187 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 134 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 113 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 135 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 114 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.62 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 74 ? HIS A 77 ? ASP A 53 HIS A 56 A 2 GLY A 50 ? SER A 57 ? GLY A 29 SER A 36 A 3 ILE A 23 ? ILE A 29 ? ILE A 2 ILE A 8 A 4 LEU A 104 ? LEU A 107 ? LEU A 83 LEU A 86 A 5 ILE A 126 ? HIS A 130 ? ILE A 105 HIS A 109 A 6 VAL A 153 ? PHE A 160 ? VAL A 132 PHE A 139 A 7 ILE A 170 ? PRO A 177 ? ILE A 149 PRO A 156 B 1 LEU A 211 ? GLU A 214 ? LEU A 190 GLU A 193 B 2 ARG A 217 ? ILE A 220 ? ARG A 196 ILE A 199 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 76 ? O LEU A 55 N VAL A 55 ? N VAL A 34 A 2 3 O ARG A 51 ? O ARG A 30 N ILE A 25 ? N ILE A 4 A 3 4 N GLY A 26 ? N GLY A 5 O CYS A 106 ? O CYS A 85 A 4 5 N VAL A 105 ? N VAL A 84 O LEU A 127 ? O LEU A 106 A 5 6 N HIS A 130 ? N HIS A 109 O THR A 157 ? O THR A 136 A 6 7 N ALA A 154 ? N ALA A 133 O VAL A 176 ? O VAL A 155 B 1 2 N VAL A 212 ? N VAL A 191 O ARG A 219 ? O ARG A 198 # _database_PDB_matrix.entry_id 3AUF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3AUF _atom_sites.fract_transf_matrix[1][1] 0.011721 _atom_sites.fract_transf_matrix[1][2] 0.006767 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013534 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017236 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -21 ? ? ? A . n A 1 2 GLY 2 -20 ? ? ? A . n A 1 3 SER 3 -19 ? ? ? A . n A 1 4 SER 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 HIS 8 -14 ? ? ? A . n A 1 9 HIS 9 -13 ? ? ? A . n A 1 10 HIS 10 -12 ? ? ? A . n A 1 11 SER 11 -11 -11 SER SER A . n A 1 12 SER 12 -10 -10 SER SER A . n A 1 13 GLY 13 -9 -9 GLY GLY A . n A 1 14 GLU 14 -8 -8 GLU GLU A . n A 1 15 ASN 15 -7 -7 ASN ASN A . n A 1 16 LEU 16 -6 -6 LEU LEU A . n A 1 17 TYR 17 -5 -5 TYR TYR A . n A 1 18 PHE 18 -4 -4 PHE PHE A . n A 1 19 GLN 19 -3 -3 GLN GLN A . n A 1 20 GLY 20 -2 -2 GLY GLY A . n A 1 21 HIS 21 -1 -1 HIS HIS A . n A 1 22 MET 22 1 1 MET MET A . n A 1 23 ILE 23 2 2 ILE ILE A . n A 1 24 ARG 24 3 3 ARG ARG A . n A 1 25 ILE 25 4 4 ILE ILE A . n A 1 26 GLY 26 5 5 GLY GLY A . n A 1 27 VAL 27 6 6 VAL VAL A . n A 1 28 LEU 28 7 7 LEU LEU A . n A 1 29 ILE 29 8 8 ILE ILE A . n A 1 30 SER 30 9 9 SER SER A . n A 1 31 GLY 31 10 10 GLY GLY A . n A 1 32 SER 32 11 11 SER SER A . n A 1 33 GLY 33 12 12 GLY GLY A . n A 1 34 THR 34 13 13 THR THR A . n A 1 35 ASN 35 14 14 ASN ASN A . n A 1 36 LEU 36 15 15 LEU LEU A . n A 1 37 GLN 37 16 16 GLN GLN A . n A 1 38 ALA 38 17 17 ALA ALA A . n A 1 39 ILE 39 18 18 ILE ILE A . n A 1 40 LEU 40 19 19 LEU LEU A . n A 1 41 ASP 41 20 20 ASP ASP A . n A 1 42 GLY 42 21 21 GLY GLY A . n A 1 43 CYS 43 22 22 CYS CYS A . n A 1 44 ARG 44 23 23 ARG ARG A . n A 1 45 GLU 45 24 24 GLU GLU A . n A 1 46 GLY 46 25 25 GLY GLY A . n A 1 47 ARG 47 26 26 ARG ARG A . n A 1 48 ILE 48 27 27 ILE ILE A . n A 1 49 PRO 49 28 28 PRO PRO A . n A 1 50 GLY 50 29 29 GLY GLY A . n A 1 51 ARG 51 30 30 ARG ARG A . n A 1 52 VAL 52 31 31 VAL VAL A . n A 1 53 ALA 53 32 32 ALA ALA A . n A 1 54 VAL 54 33 33 VAL VAL A . n A 1 55 VAL 55 34 34 VAL VAL A . n A 1 56 ILE 56 35 35 ILE ILE A . n A 1 57 SER 57 36 36 SER SER A . n A 1 58 ASP 58 37 37 ASP ASP A . n A 1 59 ARG 59 38 38 ARG ARG A . n A 1 60 ALA 60 39 39 ALA ALA A . n A 1 61 ASP 61 40 40 ASP ASP A . n A 1 62 ALA 62 41 41 ALA ALA A . n A 1 63 TYR 63 42 42 TYR TYR A . n A 1 64 GLY 64 43 43 GLY GLY A . n A 1 65 LEU 65 44 44 LEU LEU A . n A 1 66 GLU 66 45 45 GLU GLU A . n A 1 67 ARG 67 46 46 ARG ARG A . n A 1 68 ALA 68 47 47 ALA ALA A . n A 1 69 ARG 69 48 48 ARG ARG A . n A 1 70 ARG 70 49 49 ARG ARG A . n A 1 71 ALA 71 50 50 ALA ALA A . n A 1 72 GLY 72 51 51 GLY GLY A . n A 1 73 VAL 73 52 52 VAL VAL A . n A 1 74 ASP 74 53 53 ASP ASP A . n A 1 75 ALA 75 54 54 ALA ALA A . n A 1 76 LEU 76 55 55 LEU LEU A . n A 1 77 HIS 77 56 56 HIS HIS A . n A 1 78 MET 78 57 57 MET MET A . n A 1 79 ASP 79 58 58 ASP ASP A . n A 1 80 PRO 80 59 59 PRO PRO A . n A 1 81 ALA 81 60 60 ALA ALA A . n A 1 82 ALA 82 61 61 ALA ALA A . n A 1 83 TYR 83 62 62 TYR TYR A . n A 1 84 PRO 84 63 63 PRO PRO A . n A 1 85 SER 85 64 64 SER SER A . n A 1 86 ARG 86 65 65 ARG ARG A . n A 1 87 THR 87 66 66 THR THR A . n A 1 88 ALA 88 67 67 ALA ALA A . n A 1 89 PHE 89 68 68 PHE PHE A . n A 1 90 ASP 90 69 69 ASP ASP A . n A 1 91 ALA 91 70 70 ALA ALA A . n A 1 92 ALA 92 71 71 ALA ALA A . n A 1 93 LEU 93 72 72 LEU LEU A . n A 1 94 ALA 94 73 73 ALA ALA A . n A 1 95 GLU 95 74 74 GLU GLU A . n A 1 96 ARG 96 75 75 ARG ARG A . n A 1 97 LEU 97 76 76 LEU LEU A . n A 1 98 GLN 98 77 77 GLN GLN A . n A 1 99 ALA 99 78 78 ALA ALA A . n A 1 100 TYR 100 79 79 TYR TYR A . n A 1 101 GLY 101 80 80 GLY GLY A . n A 1 102 VAL 102 81 81 VAL VAL A . n A 1 103 ASP 103 82 82 ASP ASP A . n A 1 104 LEU 104 83 83 LEU LEU A . n A 1 105 VAL 105 84 84 VAL VAL A . n A 1 106 CYS 106 85 85 CYS CYS A . n A 1 107 LEU 107 86 86 LEU LEU A . n A 1 108 ALA 108 87 87 ALA ALA A . n A 1 109 GLY 109 88 88 GLY GLY A . n A 1 110 TYR 110 89 89 TYR TYR A . n A 1 111 MET 111 90 90 MET MET A . n A 1 112 ARG 112 91 91 ARG ARG A . n A 1 113 LEU 113 92 92 LEU LEU A . n A 1 114 VAL 114 93 93 VAL VAL A . n A 1 115 ARG 115 94 94 ARG ARG A . n A 1 116 GLY 116 95 95 GLY GLY A . n A 1 117 PRO 117 96 96 PRO PRO A . n A 1 118 MET 118 97 97 MET MET A . n A 1 119 LEU 119 98 98 LEU LEU A . n A 1 120 THR 120 99 99 THR THR A . n A 1 121 ALA 121 100 100 ALA ALA A . n A 1 122 PHE 122 101 101 PHE PHE A . n A 1 123 PRO 123 102 102 PRO PRO A . n A 1 124 ASN 124 103 103 ASN ASN A . n A 1 125 ARG 125 104 104 ARG ARG A . n A 1 126 ILE 126 105 105 ILE ILE A . n A 1 127 LEU 127 106 106 LEU LEU A . n A 1 128 ASN 128 107 107 ASN ASN A . n A 1 129 ILE 129 108 108 ILE ILE A . n A 1 130 HIS 130 109 109 HIS HIS A . n A 1 131 PRO 131 110 110 PRO PRO A . n A 1 132 SER 132 111 111 SER SER A . n A 1 133 LEU 133 112 112 LEU LEU A . n A 1 134 LEU 134 113 113 LEU LEU A . n A 1 135 PRO 135 114 114 PRO PRO A . n A 1 136 ALA 136 115 115 ALA ALA A . n A 1 137 PHE 137 116 116 PHE PHE A . n A 1 138 PRO 138 117 117 PRO PRO A . n A 1 139 GLY 139 118 118 GLY GLY A . n A 1 140 LEU 140 119 119 LEU LEU A . n A 1 141 GLU 141 120 120 GLU GLU A . n A 1 142 ALA 142 121 121 ALA ALA A . n A 1 143 GLN 143 122 122 GLN GLN A . n A 1 144 ARG 144 123 123 ARG ARG A . n A 1 145 GLN 145 124 124 GLN GLN A . n A 1 146 ALA 146 125 125 ALA ALA A . n A 1 147 LEU 147 126 126 LEU LEU A . n A 1 148 GLU 148 127 127 GLU GLU A . n A 1 149 HIS 149 128 128 HIS HIS A . n A 1 150 GLY 150 129 129 GLY GLY A . n A 1 151 VAL 151 130 130 VAL VAL A . n A 1 152 LYS 152 131 131 LYS LYS A . n A 1 153 VAL 153 132 132 VAL VAL A . n A 1 154 ALA 154 133 133 ALA ALA A . n A 1 155 GLY 155 134 134 GLY GLY A . n A 1 156 CYS 156 135 135 CYS CYS A . n A 1 157 THR 157 136 136 THR THR A . n A 1 158 VAL 158 137 137 VAL VAL A . n A 1 159 HIS 159 138 138 HIS HIS A . n A 1 160 PHE 160 139 139 PHE PHE A . n A 1 161 VAL 161 140 140 VAL VAL A . n A 1 162 THR 162 141 141 THR THR A . n A 1 163 ALA 163 142 142 ALA ALA A . n A 1 164 GLY 164 143 143 GLY GLY A . n A 1 165 VAL 165 144 144 VAL VAL A . n A 1 166 ASP 166 145 145 ASP ASP A . n A 1 167 GLU 167 146 146 GLU GLU A . n A 1 168 GLY 168 147 147 GLY GLY A . n A 1 169 PRO 169 148 148 PRO PRO A . n A 1 170 ILE 170 149 149 ILE ILE A . n A 1 171 ILE 171 150 150 ILE ILE A . n A 1 172 LEU 172 151 151 LEU LEU A . n A 1 173 GLN 173 152 152 GLN GLN A . n A 1 174 ALA 174 153 153 ALA ALA A . n A 1 175 ALA 175 154 154 ALA ALA A . n A 1 176 VAL 176 155 155 VAL VAL A . n A 1 177 PRO 177 156 156 PRO PRO A . n A 1 178 VAL 178 157 157 VAL VAL A . n A 1 179 LEU 179 158 158 LEU LEU A . n A 1 180 GLU 180 159 159 GLU GLU A . n A 1 181 GLY 181 160 160 GLY GLY A . n A 1 182 ASP 182 161 161 ASP ASP A . n A 1 183 THR 183 162 162 THR THR A . n A 1 184 VAL 184 163 163 VAL VAL A . n A 1 185 GLU 185 164 164 GLU GLU A . n A 1 186 ASP 186 165 165 ASP ASP A . n A 1 187 LEU 187 166 166 LEU LEU A . n A 1 188 ARG 188 167 167 ARG ARG A . n A 1 189 ARG 189 168 168 ARG ARG A . n A 1 190 ARG 190 169 169 ARG ARG A . n A 1 191 ILE 191 170 170 ILE ILE A . n A 1 192 LEU 192 171 171 LEU LEU A . n A 1 193 ALA 193 172 172 ALA ALA A . n A 1 194 GLU 194 173 173 GLU GLU A . n A 1 195 GLU 195 174 174 GLU GLU A . n A 1 196 HIS 196 175 175 HIS HIS A . n A 1 197 ARG 197 176 176 ARG ARG A . n A 1 198 ILE 198 177 177 ILE ILE A . n A 1 199 TYR 199 178 178 TYR TYR A . n A 1 200 PRO 200 179 179 PRO PRO A . n A 1 201 GLU 201 180 180 GLU GLU A . n A 1 202 ALA 202 181 181 ALA ALA A . n A 1 203 ILE 203 182 182 ILE ILE A . n A 1 204 ARG 204 183 183 ARG ARG A . n A 1 205 LEU 205 184 184 LEU LEU A . n A 1 206 PHE 206 185 185 PHE PHE A . n A 1 207 ALA 207 186 186 ALA ALA A . n A 1 208 GLU 208 187 187 GLU GLU A . n A 1 209 GLY 209 188 188 GLY GLY A . n A 1 210 ARG 210 189 189 ARG ARG A . n A 1 211 LEU 211 190 190 LEU LEU A . n A 1 212 VAL 212 191 191 VAL VAL A . n A 1 213 ILE 213 192 192 ILE ILE A . n A 1 214 GLU 214 193 193 GLU GLU A . n A 1 215 GLY 215 194 194 GLY GLY A . n A 1 216 ARG 216 195 195 ARG ARG A . n A 1 217 ARG 217 196 196 ARG ARG A . n A 1 218 VAL 218 197 197 VAL VAL A . n A 1 219 ARG 219 198 198 ARG ARG A . n A 1 220 ILE 220 199 199 ILE ILE A . n A 1 221 LEU 221 200 200 LEU LEU A . n A 1 222 ASP 222 201 201 ASP ASP A . n A 1 223 ARG 223 202 ? ? ? A . n A 1 224 ALA 224 203 ? ? ? A . n A 1 225 GLU 225 204 ? ? ? A . n A 1 226 ALA 226 205 ? ? ? A . n A 1 227 PRO 227 206 ? ? ? A . n A 1 228 ARG 228 207 ? ? ? A . n A 1 229 GLY 229 208 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1850 ? 1 MORE -11 ? 1 'SSA (A^2)' 19380 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 38.6793333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-07 2 'Structure model' 1 1 2014-01-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BSS 'data collection' . ? 1 MOLREP phasing . ? 2 CNS refinement 1.2 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 90 ? ? -87.60 40.80 2 1 VAL A 144 ? ? -47.23 108.35 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -21 ? A MET 1 2 1 Y 1 A GLY -20 ? A GLY 2 3 1 Y 1 A SER -19 ? A SER 3 4 1 Y 1 A SER -18 ? A SER 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A HIS -14 ? A HIS 8 9 1 Y 1 A HIS -13 ? A HIS 9 10 1 Y 1 A HIS -12 ? A HIS 10 11 1 Y 1 A ARG 202 ? A ARG 223 12 1 Y 1 A ALA 203 ? A ALA 224 13 1 Y 1 A GLU 204 ? A GLU 225 14 1 Y 1 A ALA 205 ? A ALA 226 15 1 Y 1 A PRO 206 ? A PRO 227 16 1 Y 1 A ARG 207 ? A ARG 228 17 1 Y 1 A GLY 208 ? A GLY 229 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 209 1 HOH TIP A . B 2 HOH 2 210 2 HOH TIP A . B 2 HOH 3 211 3 HOH TIP A . B 2 HOH 4 212 4 HOH TIP A . B 2 HOH 5 213 5 HOH TIP A . B 2 HOH 6 214 7 HOH TIP A . B 2 HOH 7 215 8 HOH TIP A . B 2 HOH 8 216 9 HOH TIP A . B 2 HOH 9 217 10 HOH TIP A . B 2 HOH 10 218 11 HOH TIP A . B 2 HOH 11 219 12 HOH TIP A . B 2 HOH 12 220 13 HOH TIP A . B 2 HOH 13 221 15 HOH TIP A . B 2 HOH 14 222 16 HOH TIP A . B 2 HOH 15 223 17 HOH TIP A . B 2 HOH 16 224 18 HOH TIP A . B 2 HOH 17 225 19 HOH TIP A . B 2 HOH 18 226 20 HOH TIP A . B 2 HOH 19 227 21 HOH TIP A . B 2 HOH 20 228 22 HOH TIP A . B 2 HOH 21 229 23 HOH TIP A . B 2 HOH 22 230 24 HOH TIP A . B 2 HOH 23 231 25 HOH TIP A . B 2 HOH 24 232 26 HOH TIP A . B 2 HOH 25 233 27 HOH TIP A . B 2 HOH 26 234 28 HOH TIP A . B 2 HOH 27 235 32 HOH TIP A . B 2 HOH 28 236 35 HOH TIP A . B 2 HOH 29 237 37 HOH TIP A . B 2 HOH 30 238 46 HOH TIP A . B 2 HOH 31 239 49 HOH TIP A . B 2 HOH 32 240 50 HOH TIP A . B 2 HOH 33 241 51 HOH TIP A . B 2 HOH 34 242 53 HOH TIP A . B 2 HOH 35 243 68 HOH TIP A . B 2 HOH 36 244 69 HOH TIP A . B 2 HOH 37 245 75 HOH TIP A . B 2 HOH 38 246 77 HOH TIP A . B 2 HOH 39 247 83 HOH TIP A . B 2 HOH 40 248 86 HOH TIP A . B 2 HOH 41 249 90 HOH TIP A . B 2 HOH 42 250 100 HOH TIP A . B 2 HOH 43 251 107 HOH TIP A . B 2 HOH 44 252 121 HOH TIP A . B 2 HOH 45 253 122 HOH TIP A . B 2 HOH 46 254 123 HOH TIP A . B 2 HOH 47 255 124 HOH TIP A . B 2 HOH 48 256 125 HOH TIP A . B 2 HOH 49 257 127 HOH TIP A . B 2 HOH 50 258 129 HOH TIP A . B 2 HOH 51 259 130 HOH TIP A . B 2 HOH 52 260 131 HOH TIP A . B 2 HOH 53 261 132 HOH TIP A . B 2 HOH 54 262 133 HOH TIP A . B 2 HOH 55 263 134 HOH TIP A . B 2 HOH 56 264 135 HOH TIP A . B 2 HOH 57 265 136 HOH TIP A . B 2 HOH 58 266 137 HOH TIP A . B 2 HOH 59 267 138 HOH TIP A . B 2 HOH 60 268 139 HOH TIP A . B 2 HOH 61 269 140 HOH TIP A . B 2 HOH 62 270 141 HOH TIP A . B 2 HOH 63 271 143 HOH TIP A . B 2 HOH 64 272 144 HOH TIP A . B 2 HOH 65 273 145 HOH TIP A . B 2 HOH 66 274 146 HOH TIP A . B 2 HOH 67 275 147 HOH TIP A . B 2 HOH 68 276 148 HOH TIP A . B 2 HOH 69 277 149 HOH TIP A . B 2 HOH 70 278 150 HOH TIP A . B 2 HOH 71 279 151 HOH TIP A . B 2 HOH 72 280 152 HOH TIP A . B 2 HOH 73 281 153 HOH TIP A . B 2 HOH 74 282 154 HOH TIP A . B 2 HOH 75 283 155 HOH TIP A . B 2 HOH 76 284 157 HOH TIP A . B 2 HOH 77 285 158 HOH TIP A . B 2 HOH 78 286 159 HOH TIP A . B 2 HOH 79 287 160 HOH TIP A . B 2 HOH 80 288 161 HOH TIP A . B 2 HOH 81 289 162 HOH TIP A . B 2 HOH 82 290 163 HOH TIP A . B 2 HOH 83 291 164 HOH TIP A . B 2 HOH 84 292 165 HOH TIP A . B 2 HOH 85 293 166 HOH TIP A . B 2 HOH 86 294 167 HOH TIP A . B 2 HOH 87 295 168 HOH TIP A . B 2 HOH 88 296 169 HOH TIP A . B 2 HOH 89 297 170 HOH TIP A . B 2 HOH 90 298 171 HOH TIP A . B 2 HOH 91 299 172 HOH TIP A . #